mRNA_D-dudresnayi_contig104.430.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig104.430.1
Unique NamemRNA_D-dudresnayi_contig104.430.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig104.430.1 vs. uniprot
Match: A0A7S3MD79_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MD79_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.760e-22
Identity = 54/95 (56.84%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:    1 TREQLCLAVITVSESDDISFFLLDSLISALYSSYDPEEVVSSSAQAACYTALTVLSDFSAQGYLSDESTELIVSVVAKFTVNAAGS-SVDSRRRL 282
            TR  LC AV+ +S+ DD++F  LDSLI+ALYS+YDP EVVS+  +A CY AL++LS +SA G+LSDES  LIV V  KF ++AA S + D+ RRL
Sbjct:  591 TRTSLCAAVVEISQGDDVTFTFLDSLINALYSAYDPNEVVSAEGRAVCYEALSILSQYSADGFLSDESAALIVDVTGKFVIDAASSGNTDTSRRL 685
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BLAST of mRNA_D-dudresnayi_contig104.430.1 vs. uniprot
Match: A0A482SH65_9ARCH (REJ domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SH65_9ARCH)

HSP 1 Score: 88.2 bits (217), Expect = 1.290e-16
Identity = 61/211 (28.91%), Postives = 102/211 (48.34%), Query Frame = 1 
Query:    4 REQLCLAVITVSESDDISFFLLDSLISALYSSYDPEEVVSSSAQAACYTALTVLSDFSAQGYLSDESTELIVSVVAKFTVNAAGSSVDSRRRLVSETAHDRARTIDQSISGIVAGVLNNMANGEDPVEIVNDEMQIVFVKSLASDL--TSMSPPRTQDQIDQGITALNTIELSESAIEDFQNADGYIGAAVMNWGVNPFPDSEDVQNSLMR 630
            R  +C  +  +S   D +  LL+SL  +L + Y   EV S S  + C  +L+++S  + QGY+S  + +        +   +  + V+    +      +  + I  S++ I +G+L  M NG+ P+++V D +QI     L  DL  TS+SPP T  +   G   L T+ L ES      N   ++   VM W  NPF +S DV + ++R
Sbjct: 1105 RGLMCSGLNNISFIGDATGALLESLAGSLATVYVGTEVASDSTASTCQGSLSIISSLAQQGYISASAPD-----TGLYLTRSVSAFVEHGGNV------NNGKVISDSLTDIASGLLGGMTNGQMPIDLVADNVQITLRNDLYLDLVNTSLSPPSTSAESQYGTPPL-TVGLRESTAGACANDQSFVQLTVMKWSTNPFANSSDVLSPILR 1303
[Close]
BLAST of mRNA_D-dudresnayi_contig104.430.1 vs. uniprot
Match: A0A7S3MEK0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MEK0_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.510e-10
Identity = 35/110 (31.82%), Postives = 68/110 (61.82%), Query Frame = 1 
Query:  307 ARTIDQSISGIVAGVLNNMANGEDPVEIVNDEMQIVFVKSLASDLTSMSPPRTQDQIDQGITALNT-IELS-ESAIEDFQNADGYIGAAVMNWGVNPFPDSEDVQNSLMR 630
            +  ++ ++S I++GVL  MA GE+PV   N ++++   K+L ++LT ++ P+T        +A+N+ +EL+  +  E   +A GY+ A+ + W  NP+P+S  +++SL R
Sbjct:    1 SEALNLAVSKIISGVLQTMAEGEEPVVFANSQLEVSIYKTLPTNLTELATPQT--------SAVNSYLELAGNTTAESLSSASGYVEASALVWLTNPYPNSAVLESSLFR 102
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig104.430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3MD79_9STRA3.760e-2256.84Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482SH65_9ARCH1.290e-1628.91REJ domain-containing protein (Fragment) n=1 Tax=a... [more]
A0A7S3MEK0_9STRA5.510e-1031.82Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig104contigD-dudresnayi_contig104:17544..18174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size631
Cds size630
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927539.6154103-CDS-D-dudresnayi_contig104:17543..181731622927539.6154103-CDS-D-dudresnayi_contig104:17543..18173Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig104 17544..18173 +
1690556799.0686805-CDS-D-dudresnayi_contig104:17543..181731690556799.0686805-CDS-D-dudresnayi_contig104:17543..18173Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig104 17544..18173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig104.430.1prot_D-dudresnayi_contig104.430.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig104 17544..18173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig104.430.1

>prot_D-dudresnayi_contig104.430.1 ID=prot_D-dudresnayi_contig104.430.1|Name=mRNA_D-dudresnayi_contig104.430.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=210bp
TREQLCLAVITVSESDDISFFLLDSLISALYSSYDPEEVVSSSAQAACYT
ALTVLSDFSAQGYLSDESTELIVSVVAKFTVNAAGSSVDSRRRLVSETAH
DRARTIDQSISGIVAGVLNNMANGEDPVEIVNDEMQIVFVKSLASDLTSM
SPPRTQDQIDQGITALNTIELSESAIEDFQNADGYIGAAVMNWGVNPFPD
SEDVQNSLMR
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mRNA from alignment at D-dudresnayi_contig104:17544..18174+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig104.430.1 ID=mRNA_D-dudresnayi_contig104.430.1|Name=mRNA_D-dudresnayi_contig104.430.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=631bp|location=Sequence derived from alignment at D-dudresnayi_contig104:17544..18174+ (Desmarestia dudresnayi DdudBR16 monoicous)
ACTCGCGAACAGCTGTGTCTTGCAGTGATCACAGTCAGTGAGAGTGACGA
CATCTCCTTCTTCCTGTTGGACTCCCTTATCAGTGCGCTGTACTCCAGTT
ATGACCCAGAAGAGGTGGTTAGCTCGTCTGCCCAGGCAGCATGCTACACT
GCACTTACTGTGCTGTCTGACTTCTCTGCACAAGGTTATCTCAGTGACGA
GTCCACCGAGCTGATTGTGTCTGTTGTTGCCAAGTTTACTGTTAATGCCG
CTGGTAGTAGTGTTGATTCCCGCCGTCGTCTTGTTTCAGAGACTGCACAT
GACCGCGCTCGCACTATTGACCAGTCCATCAGTGGCATTGTGGCGGGTGT
GCTGAACAACATGGCGAATGGAGAGGACCCTGTCGAGATCGTCAACGATG
AGATGCAGATCGTCTTCGTCAAGAGTTTAGCCAGTGACCTCACCTCGATG
TCACCTCCTCGCACACAAGATCAGATCGACCAGGGCATTACTGCACTAAA
CACGATCGAGCTCAGTGAGAGTGCGATCGAAGACTTCCAGAATGCCGACG
GTTATATCGGAGCTGCGGTGATGAACTGGGGTGTTAACCCTTTCCCGGAC
TCAGAAGATGTGCAGAACAGTTTGATGCGCG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig104:17544..18174+

>mRNA_D-dudresnayi_contig104.430.1 ID=mRNA_D-dudresnayi_contig104.430.1|Name=mRNA_D-dudresnayi_contig104.430.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at D-dudresnayi_contig104:17544..18174+ (Desmarestia dudresnayi DdudBR16 monoicous)
ACTCGCGAACAGCTGTGTCTTGCAGTGATCACAGTCAGTGAGAGTGACGA
CATCTCCTTCTTCCTGTTGGACTCCCTTATCAGTGCGCTGTACTCCAGTT
ATGACCCAGAAGAGGTGGTTAGCTCGTCTGCCCAGGCAGCATGCTACACT
GCACTTACTGTGCTGTCTGACTTCTCTGCACAAGGTTATCTCAGTGACGA
GTCCACCGAGCTGATTGTGTCTGTTGTTGCCAAGTTTACTGTTAATGCCG
CTGGTAGTAGTGTTGATTCCCGCCGTCGTCTTGTTTCAGAGACTGCACAT
GACCGCGCTCGCACTATTGACCAGTCCATCAGTGGCATTGTGGCGGGTGT
GCTGAACAACATGGCGAATGGAGAGGACCCTGTCGAGATCGTCAACGATG
AGATGCAGATCGTCTTCGTCAAGAGTTTAGCCAGTGACCTCACCTCGATG
TCACCTCCTCGCACACAAGATCAGATCGACCAGGGCATTACTGCACTAAA
CACGATCGAGCTCAGTGAGAGTGCGATCGAAGACTTCCAGAATGCCGACG
GTTATATCGGAGCTGCGGTGATGAACTGGGGTGTTAACCCTTTCCCGGAC
TCAGAAGATGTGCAGAACAGTTTGATGCGCACTCGCGAACAGCTGTGTCT
TGCAGTGATCACAGTCAGTGAGAGTGACGACATCTCCTTCTTCCTGTTGG
ACTCCCTTATCAGTGCGCTGTACTCCAGTTATGACCCAGAAGAGGTGGTT
AGCTCGTCTGCCCAGGCAGCATGCTACACTGCACTTACTGTGCTGTCTGA
CTTCTCTGCACAAGGTTATCTCAGTGACGAGTCCACCGAGCTGATTGTGT
CTGTTGTTGCCAAGTTTACTGTTAATGCCGCTGGTAGTAGTGTTGATTCC
CGCCGTCGTCTTGTTTCAGAGACTGCACATGACCGCGCTCGCACTATTGA
CCAGTCCATCAGTGGCATTGTGGCGGGTGTGCTGAACAACATGGCGAATG
GAGAGGACCCTGTCGAGATCGTCAACGATGAGATGCAGATCGTCTTCGTC
AAGAGTTTAGCCAGTGACCTCACCTCGATGTCACCTCCTCGCACACAAGA
TCAGATCGACCAGGGCATTACTGCACTAAACACGATCGAGCTCAGTGAGA
GTGCGATCGAAGACTTCCAGAATGCCGACGGTTATATCGGAGCTGCGGTG
ATGAACTGGGGTGTTAACCCTTTCCCGGACTCAGAAGATGTGCAGAACAG
TTTGATGCGC
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