mRNA_D-dudresnayi_contig104.427.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig104.427.1
Unique NamemRNA_D-dudresnayi_contig104.427.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig104.427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig104contigD-dudresnayi_contig104:3129..3444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927539.487121-UTR-D-dudresnayi_contig104:3128..31441622927539.487121-UTR-D-dudresnayi_contig104:3128..3144Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig104 3129..3144 +
1690556799.0209682-UTR-D-dudresnayi_contig104:3128..31441690556799.0209682-UTR-D-dudresnayi_contig104:3128..3144Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig104 3129..3144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927539.4997072-CDS-D-dudresnayi_contig104:3144..34441622927539.4997072-CDS-D-dudresnayi_contig104:3144..3444Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig104 3145..3444 +
1690556799.0296931-CDS-D-dudresnayi_contig104:3144..34441690556799.0296931-CDS-D-dudresnayi_contig104:3144..3444Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig104 3145..3444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig104.427.1prot_D-dudresnayi_contig104.427.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig104 3145..3444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig104.427.1

>prot_D-dudresnayi_contig104.427.1 ID=prot_D-dudresnayi_contig104.427.1|Name=mRNA_D-dudresnayi_contig104.427.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=100bp
MMAPPSRRMPTSHSTPALNDSDPLAAMMAPPSMRYSMPPPSSTMPSSSSM
PAINVWKPPPVPVSAAASPNPTTAAAAGSSSAGVAQEPSGDRDDMSSIAS
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mRNA from alignment at D-dudresnayi_contig104:3129..3444+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig104.427.1 ID=mRNA_D-dudresnayi_contig104.427.1|Name=mRNA_D-dudresnayi_contig104.427.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=316bp|location=Sequence derived from alignment at D-dudresnayi_contig104:3129..3444+ (Desmarestia dudresnayi DdudBR16 monoicous)
CGATCCTCTCGCTGCTATGATGGCACCGCCGTCCCGGAGAATGCCAACTA
GTCACAGTACTCCCGCTCTAAACGACAGTGATCCCCTGGCTGCGATGATG
GCACCCCCTTCTATGCGATACAGTATGCCTCCTCCCTCTTCTACTATGCC
CAGTAGTAGCAGCATGCCTGCGATCAATGTATGGAAGCCTCCACCAGTCC
CTGTCTCTGCTGCGGCTTCCCCTAACCCTACTACTGCAGCAGCAGCTGGT
AGTAGTAGTGCTGGTGTAGCCCAAGAACCTAGTGGAGATAGGGATGATAT
GAGTAGTATAGCCAGT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig104:3129..3444+

>mRNA_D-dudresnayi_contig104.427.1 ID=mRNA_D-dudresnayi_contig104.427.1|Name=mRNA_D-dudresnayi_contig104.427.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at D-dudresnayi_contig104:3129..3444+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGATGGCACCGCCGTCCCGGAGAATGCCAACTAGTCACAGTACTCCCGC
TCTAAACGACAGTGATCCCCTGGCTGCGATGATGGCACCCCCTTCTATGC
GATACAGTATGCCTCCTCCCTCTTCTACTATGCCCAGTAGTAGCAGCATG
CCTGCGATCAATGTATGGAAGCCTCCACCAGTCCCTGTCTCTGCTGCGGC
TTCCCCTAACCCTACTACTGCAGCAGCAGCTGGTAGTAGTAGTGCTGGTG
TAGCCCAAGAACCTAGTGGAGATAGGGATGATATGAGTAGTATAGCCAGT
ATGATGGCACCGCCGTCCCGGAGAATGCCAACTAGTCACAGTACTCCCGC
TCTAAACGACAGTGATCCCCTGGCTGCGATGATGGCACCCCCTTCTATGC
GATACAGTATGCCTCCTCCCTCTTCTACTATGCCCAGTAGTAGCAGCATG
CCTGCGATCAATGTATGGAAGCCTCCACCAGTCCCTGTCTCTGCTGCGGC
TTCCCCTAACCCTACTACTGCAGCAGCAGCTGGTAGTAGTAGTGCTGGTG
TAGCCCAAGAACCTAGTGGAGATAGGGATGATATGAGTAGTATAGCCAGT
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