mRNA_D-dudresnayi_contig104.426.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig104.426.1
Unique NamemRNA_D-dudresnayi_contig104.426.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig104.426.1 vs. uniprot
Match: A0A7S3HPN4_9STRA (Protein transport protein sec16 (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPN4_9STRA)

HSP 1 Score: 103 bits (258), Expect = 6.980e-24
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:   13 TLLYANQGSAAVLGTDKPAVRDEVLTLWRHNLAAILSNKGANWQQLAAFLGYRLQNEAKDLYAAHAAYLCAGVYPTFPTSSA 258
            T          +  T+ P+  ++VLTLWRHNL+AILSNK  NWQQLA+FLGYRLQ E+KD++AAH+AYL AG YPTFP SSA
Sbjct:  705 TTTVTTSAHTTITNTNGPS--NDVLTLWRHNLSAILSNKPNNWQQLASFLGYRLQQESKDIFAAHSAYLTAGAYPTFPVSSA 784
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig104.426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3HPN4_9STRA6.980e-2460.98Protein transport protein sec16 (Fragment) n=2 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig104contigD-dudresnayi_contig104:69..496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size283
Cds size282
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927539.3581126-CDS-D-dudresnayi_contig104:68..2571622927539.3581126-CDS-D-dudresnayi_contig104:68..257Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig104 69..257 +
1690556798.9664896-CDS-D-dudresnayi_contig104:68..2571690556798.9664896-CDS-D-dudresnayi_contig104:68..257Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig104 69..257 +
1622927539.3726711-CDS-D-dudresnayi_contig104:403..4961622927539.3726711-CDS-D-dudresnayi_contig104:403..496Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig104 404..496 +
1690556798.9772205-CDS-D-dudresnayi_contig104:403..4961690556798.9772205-CDS-D-dudresnayi_contig104:403..496Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig104 404..496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig104.426.1prot_D-dudresnayi_contig104.426.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig104 69..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig104.426.1

>prot_D-dudresnayi_contig104.426.1 ID=prot_D-dudresnayi_contig104.426.1|Name=mRNA_D-dudresnayi_contig104.426.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=94bp
MHTLTLLYANQGSAAVLGTDKPAVRDEVLTLWRHNLAAILSNKGANWQQL
AAFLGYRLQNEAKDLYAAHAAYLCAGVYPTFPTSSAHSSAQNVR
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mRNA from alignment at D-dudresnayi_contig104:69..496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig104.426.1 ID=mRNA_D-dudresnayi_contig104.426.1|Name=mRNA_D-dudresnayi_contig104.426.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=428bp|location=Sequence derived from alignment at D-dudresnayi_contig104:69..496+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCATACACTCACCTTACTATATGCCAACCAAGGCAGTGCGGCGGTATT
GGGTACAGACAAGCCTGCAGTGCGGGACGAGGTTCTCACTCTCTGGAGGC
ACAACCTGGCTGCGATCCTGTCGAATAAAGGCGCCAACTGGCAGCAGCTC
GCCGCTTTCCTCGGATATAGACTGCAGAATGAGGCCAAGGTAAGCTTGTC
GCATATGCTTCATCTGCTTGTATATACTGTACTGTATATATACTAGCACA
GTTTACAGTTATATATGCTTATATTTTATACTTTATAGTATTTTATTTCT
TTCTTTAATTATAATAATTGTTATGATGTATATAGGATTTATATGCCGCA
CATGCCGCCTATCTATGTGCAGGTGTATACCCTACTTTCCCTACTAGTAG
CGCACATAGCAGTGCACAGAATGTTCGC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig104:69..496+

>mRNA_D-dudresnayi_contig104.426.1 ID=mRNA_D-dudresnayi_contig104.426.1|Name=mRNA_D-dudresnayi_contig104.426.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at D-dudresnayi_contig104:69..496+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCATACACTCACCTTACTATATGCCAACCAAGGCAGTGCGGCGGTATT
GGGTACAGACAAGCCTGCAGTGCGGGACGAGGTTCTCACTCTCTGGAGGC
ACAACCTGGCTGCGATCCTGTCGAATAAAGGCGCCAACTGGCAGCAGCTC
GCCGCTTTCCTCGGATATAGACTGCAGAATGAGGCCAAGATGCATACACT
CACCTTACTATATGCCAACCAAGGCAGTGCGGCGGTATTGGGTACAGACA
AGCCTGCAGTGCGGGACGAGGTTCTCACTCTCTGGAGGCACAACCTGGCT
GCGATCCTGTCGAATAAAGGCGCCAACTGGCAGCAGCTCGCCGCTTTCCT
CGGATATAGACTGCAGAATGAGGCCAAGGATTTATATGCCGCACATGCCG
CCTATCTATGTGCAGGTGTATACCCTACTTTCCCTACTAGTAGCGCACAT
AGCAGTGCACAGAATGTTCGCGATTTATATGCCGCACATGCCGCCTATCT
ATGTGCAGGTGTATACCCTACTTTCCCTACTAGTAGCGCACATAGCAGTG
CACAGAATGTTCGC
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