mRNA_D-dudresnayi_contig10386.416.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10386.416.1
Unique NamemRNA_D-dudresnayi_contig10386.416.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10386.416.1 vs. uniprot
Match: D8LEE1_ECTSI (NADH:ubiquinone oxidoreductase complex I n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE1_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 3.070e-19
Identity = 58/115 (50.43%), Postives = 72/115 (62.61%), Query Frame = 1 
Query:   46 MAMKACVGLGA-LGLLSGPLVGDAFHPATGGLPYGARGSITRQGGGGALSASSAAGFDVGEWFRQAFNLPTKGGATQKKEGAEKAGKA------GCTDAVLVLGGTGKTGQRVVK 369
            M +K C+ + A +GL S  LVG       GGLP GARG+ TR   GG    ++ +GFD+G+WF+QAF  P    A +KK G   A KA      GCTDAVLVLGGTGKTGQ+VV+
Sbjct:    1 MIVKPCIAVSAAVGLTSSALVGALHASGPGGLPRGARGTATR---GGQGMEATGSGFDLGDWFKQAFT-PQTAAAVKKKAGTSTAKKAKAPSGRGCTDAVLVLGGTGKTGQKVVE 111
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10386.416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEE1_ECTSI3.070e-1950.43NADH:ubiquinone oxidoreductase complex I n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10386contigD-dudresnayi_contig10386:3305..8792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue2e-16
Seed eggNOG ortholog2880.D8LEE1
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
Ec32 ortholog descriptionNADH:ubiquinone oxidoreductase complex I
Ec32 orthologEc-00_001940.1
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size371
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927538.4068708-CDS-D-dudresnayi_contig10386:3305..33901622927538.4068708-CDS-D-dudresnayi_contig10386:3305..3390Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10386 3306..3390 -
1690556798.5762787-CDS-D-dudresnayi_contig10386:3305..33901690556798.5762787-CDS-D-dudresnayi_contig10386:3305..3390Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10386 3306..3390 -
1622927538.4211574-CDS-D-dudresnayi_contig10386:8508..87921622927538.4211574-CDS-D-dudresnayi_contig10386:8508..8792Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10386 8509..8792 -
1690556798.587138-CDS-D-dudresnayi_contig10386:8508..87921690556798.587138-CDS-D-dudresnayi_contig10386:8508..8792Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10386 8509..8792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10386.416.1prot_D-dudresnayi_contig10386.416.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10386 3306..8792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10386.416.1

>prot_D-dudresnayi_contig10386.416.1 ID=prot_D-dudresnayi_contig10386.416.1|Name=mRNA_D-dudresnayi_contig10386.416.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=123bp
LLLFFLHAIVTPPGTMAMKACVGLGALGLLSGPLVGDAFHPATGGLPYGA
RGSITRQGGGGALSASSAAGFDVGEWFRQAFNLPTKGGATQKKEGAEKAG
KAGCTDAVLVLGGTGKTGQRVVK
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mRNA from alignment at D-dudresnayi_contig10386:3305..8792-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10386.416.1 ID=mRNA_D-dudresnayi_contig10386.416.1|Name=mRNA_D-dudresnayi_contig10386.416.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=5488bp|location=Sequence derived from alignment at D-dudresnayi_contig10386:3305..8792- (Desmarestia dudresnayi DdudBR16 monoicous)
TTACTCTTATTCTTTCTCCACGCCATTGTTACCCCTCCTGGAACCATGGC
AATGAAGGCTTGTGTTGGCCTGGGTGCACTCGGCTTGCTATCGGGCCCTC
TCGTGGGAGATGCCTTCCATCCTGCAACAGGAGGGCTTCCTTACGGGGCC
CGCGGTAGCATCACTAGGCAGGGCGGAGGGGGCGCGTTGTCTGCATCCTC
TGCTGCGGGGTTCGACGTGGGAGAGTGGTTTCGCCAAGCATTCAATCTTC
CCACAAAGGGGGGTGCTACTCAGAAGAAAGAAGGGTAAGATATGGTTGAT
ATCGTCTTCATGGTGGGAAGTAGCTTTAGAAGCGAGACAGCACAGTCAGT
ACAGTAGTAGTAGTTGGTTATTGTGTACTTTGTTTGGTTTTGTTTTTTTG
TCAAAATGGCGAGGATCTTTTGGCCAGCAGCAGGAGGGCGCGTGTTCAAC
ATATCCATCCAGCATCATATGACACATGATGCGACATGCGACATGCGACA
TGCCACACGAGACGAGACACAAGAGAAGGATTAGTTGCCCATGCAGCCAT
GCATGATACTGAACCACGGTCCCTTCTGGACTCTTTGCCCCTCTCGTGCA
CGCATGGCTACTGCGCTGGCAGACTGCACTGTACTATGATATTGCTGATA
CTGAACCATGGTCCCTTCTGGACACTTTGCCCCTCTCGTGCACGCATGGC
TACTGCGCTGGCAGACTGCACTGTACTACATATGATATTGCAATTGGTAT
AAGTTCGTTCGAATATGGAACGATGTCAATGGTACACGACATGACACAAC
TACTCGTAGTATTATTATTTTTACTTACAAAGACATCAGCCGTGACGTTC
CTAACTGGTTCGGGCGCCAGGGGATAATCGTCAACCTCACTGTGTGATAC
ATAATAAGTCGCGCGGATTCTATCGGTCCTCAGATAATTTATAACGCCGT
GGCTGCACTGGGGTGTCCCAGGCTCTACAGGATAATTTTGGGAAACAGTT
AAATCATACCTGGTATTAATAGTTGGGACTTTCGAATTTTGAATTTTGCG
ACGTCGCGGCTGGTGTACGAGTACGAATACTATTAACAACGTGTTTGCGC
GTAACATATTTTGCCAAGTGTTTTCGTCGGTAAAGCTAGTATAAAATGAA
GTTACTCCGTGGTGCACGTAGTTAAATTTGAAATTTGCTTATTATTTTTC
TTACAAAGACATCAGCCGTGACGTTCCAAACTGGTTCGGCGGCCAGGGGA
TAATCGTCAACCTCACTGTGTGATACATCGGTCGCGCGGATTCTATCGGT
CCTCAGATAAGTTATAACGCAGTTGAAATTTGCTTATATAATGGATCTTG
TGCAAAGAGCCATCAACTAACAAACTAACAACTGACAAAAATAGTATGAA
CCCCAAGGGCACAGAACACAGGAGACAAGAGACACAGGAGGATCGCGTTT
TTTTCTCGTGGTACTGCGCAGCGACGATTACCAGCAAGCGCCTCTCGCAC
GCCCCAAGTTACTGCAACACCTTTCGACAAAGGGCTCACACGGCTGGCTG
CGACAAGCTCAAGGTCGATTTCTTCGTCGTTGGTTGTCTTCGTCACCTCG
CGAAAGAGAGATCTGACATCGCAATCAAGGCAAACAGACAACCTTGCTGA
ACCTTGAGACAACACAACAACACAACAACGCAACCACCACCACCACCACC
ACCACGTGCATCATCCGCGCTTGAGGCAGTTAAGAAGCCCAGCCACCACT
GCACAGCCACTGCTACTGTGCTACTACTAGTCACCGCTGACTAGTAGCAC
AGTGGTGAAACCGTGCTGCTCACAGCCGCCCTGCGCCTTGCTGCACGTGT
ACGACTACTATGTTGTTGTGCTACTGTTAATAATACTATGATCGCTGTAG
TCATCGCTGCGAGTAGTAGCACAGGCAACAGCTGTAAACTGATGGCCACA
CTTGCCCACCATTCCGATATCATGCTTTCTCTCCATGGGTCGCTTCGTGT
AAACACAGCGCAGACGCTGCAGCAGCAGCACAAACACAACTAACTATAGG
GACTTGCGAGGGAAAACGAGGTACTACTGCTGTTGTTGCTGCTGCATGCT
GGCGGCTGGCTCAACGCACAACACACACTCGCGTTTCTTGTTTTTGGCGG
GTGCACTCGACCAATCGGGAGCGCTGGCCAACCCAGTAACGTGGTCGTTA
CCATCTATGATGATAGCCAAAAATACTTGGCTCTAGTATAATTTGCCTTC
CAAATGTTACTAACTTAGGCAAATTTGTGCTAAAGCTTGGTTCATATAAA
ATTAGCGGTCGGTAGTTATTCCCCCGAGCTGGTCGTTAGGTAGCAAAATA
TGTTATGCGCAAACACGTTCATGTATAATTTTGGAACATCACGGCTGATA
TTTTTTAAGTAAAAATAATAATTCACAGGTTTGTAAAACTAACAATTCGA
TTACAATTGACAAGCTCAAGGAATGCCGACACCTGCGCGCGATAAAGCAA
GGCAACGCAACGCAACGCACATTAACGCAAAGCAGAGCAGAGCAACGCAA
ATCACCGCAAAGCAAATACTCGTATATATGCAAAGCACACTACGGGTATT
CAAGTTTCAACCTCCTCCGTAGTTTGCTCAACCGACGGGGATGTTTTTTG
TCGTCCCAAGGGCACATTTTTTAGTTCACAAAATGTTGGCCGCAAAACCT
GAAAGTTGTAGCGGGAGATACGGCGACGGGACCGTTAAAATTGATCGTAC
TCGTATAGTCTAGTGGTCCAACGTGCAAGCCAACCAAAGACAACACAACG
ATGATTTGATAGTACTGTTGTAAACACAACACACAACCCAACCCAACCCA
ACCTCGCCCAACTCAACACGGCCCAACCCATCGCGTTTATCCCAGATTGT
ATAGTTTTAAAAACAACACAACCCAACACAGCCCAACCTAACGTACTTAT
TCCATTCGTATAAGGTACCAAGTATAGTTTTAAAAACCAATTGCCGGGGG
AGGTGGGGGGGCATAGATACGACAGCGGTGACCACGGCTTATTGCTCGGA
CTTAGCTGGGAAGTTAACCCTACGAAATCCAGTAATGTCCTCAGAGGCTG
TACGCTACGAAAATCTCAGAGTGCTGCCTAGCGATGCCCCCCGCAAATAG
CAGTCGCCGTTCACGGAAATTTGTTCGACGCTCTCTCTCGCTTTGGGTCT
TCTTGAGGACCGTCGCGTGTGACATCCCATGGTCCGTGCATTGTCGGCGT
TGGAAACCAATGAATCGCAGGAGGAATACAGTACCTCAAATATTCAATAT
TCTGCCCTGTGTTTACTCATTCTTGGACGACCGAGTGCCCCCAAAATGGT
AGACTGCATTTGAAATCCTTCCTCTTTCTGTACCAAAGGGAACACAATAG
ATTTTGTAAATAAAAATTTACTTGGTAAGAGTTTCCTCTGAGGAGCCATA
GAATACGCGAGACCGAAGTATCACACAGATAGTGAGGTTGACGATTTGCT
TATATATTTTTTTTCCCCGTCCCGTTTGTTATCTTCGTTCTATTCTTTCT
CTAGCTCCATCTCTCTTCGTAACTCAGATCCGGGGTCACATAGTCGGCGC
TCCTCCCGCCTTCCCACTACGGTACGTGCCTACATTTTTATCGCGAGAAG
AGTGCAGCGCTTTCTTCCCTCGTCGAGTTTCATCGAATTGTGCTTACTCA
TGCTGCAAAAATAAAATAAAAATTAGAAATAAACAGAAAAAAATAGTAAA
AAAAAGGCAATGACTTAAAGCTATCAGAATATCAAATATTAACGATCAAT
ACCTCGTGTGCCTACTGCATGATTTGACTCCTTTTCCCCCCTCAAGAAAG
GAGGCAGGCGTGCGGTAGAGGTAGACAACAAGATTGTGAATCGGCAAATA
TAAAACGGTAAAAATTTTTTTTTTTTTTTAAAAGCTTAGAAAAAATAGAG
AAGCTTGAAAAAAAAAAAAAAAAAACGACCGTGGCATTTTTGTGAGGCGA
CGCTTTACTGTTACATTTTTACTCATCCGCCGAAGGCTACAAAAAAAAGT
AAAAAAATGAAACAATAAACCTGGTCAACCACCACTCTCTATGTTGTGCG
TATATCGCCTACCTCGTCTGCTTGCTCTGTCTCCCGTCGTCCGTCTCTTG
TGTGTCTCGGCGTGCGGTCTTACATTAGTTAGTATGATATGCACAACCGA
AAAATAGTGATAATTTATACAAAAGCCAAAAATTGCACTCTTCTGTGTCG
TCTTCTGTGGCTGAAAAGCGCGAGAGTGCGGAAGCGCGAGCAAGAATTAA
GAAATTCGGTGAAAGTTGATGCGATGCCTATTACGCGAATGCCGATGCCT
GTGCACGATAAATACCAAGGAAGCATGTACCGGGCGGGAGAAGGGGAGAC
ACCTGTGACCACGGTTTGCCCAGACTGCCGCAGAGCCATAAGTTCATGTG
ACAGTACATACGAAGTACAATTTACAGAGGCCCATAACAAGTAGAGGCCC
AAAACAGGGTGAATTAAGGGGGAGCAAACATCTTTCCCGACCCCCCCCCC
CCCCCTTAAGAATGAAAATGTAGCACCGTTGATAAGTCAGTCTACTGCCA
CCGCATTATAAAATCGAACTCGATCCATCCGCGATTCACGCCGCGTCTGT
CTCACGAGACACACATCAATGTAACTGTTTTGGGCCTGTTTTTTGGGGGC
CCTCGTGATAGCACTCTTTTGAGAACATTTTCTTAGAAGGTTATCACTCG
CTATTACTATACTGAAGTAGGGGGTCATTTCTGATGTAGAGTTAGGATTT
TGTTATAGAAATATCTAGCATTTTCTGTATCCCACTTCTCTATACTATTT
AAGTATATAATAAGATCAAAATGTACGAGATCCCTCTACGAAAACAAGTG
TAATACTCGTATTATGATATTAATAGTATCAATACGACCTCTCCCGTGAG
CTGAGCTGGAAAAGTTGAAGTGAAATGATGGGAAAAGCAAAAAATAAATA
AAATGAACCAAGGACCATTGTCTCGCAGACCCTACGAGTAGTGGAAAAGC
ATCACCAAAATCTCACTTACAACAAAATGCAGAATACGTGTTTTCTATGC
AGTAACCGCCTCCCTCTTCTTTTGTCTTTGTTGAATACCAGGTACGCTGC
CAGAGATGTATATAAGCGTGTGCGCAAAAAACGATCTAACTCATGTTATG
TTATGCGTTGATTGTATTTCATGCTATCCACTAGACCACTCAAGTCACTT
TTGAATCGGTGGTCTAGTAGATAGTGTTGCGAATATATAACCAACAGTAT
GTATATACTCTCGAGTTCATCGAATCTCGGCGGCTTCCAACGTTATGTCA
TGTTTTTTTTTTCTTTGCTCGTACACCCCTACGACAACGCCAACAACACC
AGTGCTGAGAAGGCAGGAAAGGCCGGCTGTACGGACGCGGTCTTGGTCCT
CGGTGGCACGGGTAAGACGGGACAGCGGGTTGTCAAGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10386:3305..8792-

>mRNA_D-dudresnayi_contig10386.416.1 ID=mRNA_D-dudresnayi_contig10386.416.1|Name=mRNA_D-dudresnayi_contig10386.416.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at D-dudresnayi_contig10386:3305..8792- (Desmarestia dudresnayi DdudBR16 monoicous)
TTACTCTTATTCTTTCTCCACGCCATTGTTACCCCTCCTGGAACCATGGC
AATGAAGGCTTGTGTTGGCCTGGGTGCACTCGGCTTGCTATCGGGCCCTC
TCGTGGGAGATGCCTTCCATCCTGCAACAGGAGGGCTTCCTTACGGGGCC
CGCGGTAGCATCACTAGGCAGGGCGGAGGGGGCGCGTTGTCTGCATCCTC
TGCTGCGGGGTTCGACGTGGGAGAGTGGTTTCGCCAAGCATTCAATCTTC
CCACAAAGGGGGGTGCTACTCAGAAGAAAGAAGGTTACTCTTATTCTTTC
TCCACGCCATTGTTACCCCTCCTGGAACCATGGCAATGAAGGCTTGTGTT
GGCCTGGGTGCACTCGGCTTGCTATCGGGCCCTCTCGTGGGAGATGCCTT
CCATCCTGCAACAGGAGGGCTTCCTTACGGGGCCCGCGGTAGCATCACTA
GGCAGGGCGGAGGGGGCGCGTTGTCTGCATCCTCTGCTGCGGGGTTCGAC
GTGGGAGAGTGGTTTCGCCAAGCATTCAATCTTCCCACAAAGGGGGGTGC
TACTCAGAAGAAAGAAGGTGCTGAGAAGGCAGGAAAGGCCGGCTGTACGG
ACGCGGTCTTGGTCCTCGGTGGCACGGGTAAGACGGGACAGCGGGTTGTC
AAGTGCTGAGAAGGCAGGAAAGGCCGGCTGTACGGACGCGGTCTTGGTCC
TCGGTGGCACGGGTAAGACGGGACAGCGGGTTGTCAAG
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