mRNA_D-dudresnayi_contig10380.407.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10380.407.1
Unique NamemRNA_D-dudresnayi_contig10380.407.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10380.407.1 vs. uniprot
Match: A0A6H5KJB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB0_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 2.100e-51
Identity = 83/106 (78.30%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:   40 VLPTLATRDQWEHFWGGSDMQRVGKLFEVSAVAFLGLWACYFTSFFLGSGATSLVGASFLFYWLLAPNTTAFRRNRALRGRIAPFPGGDGNYFAIFSARVASAKEE 357
            VLP LATRDQW H+WGGSD+QRVGKLFEV+AVAFLGLWACYF SFFLG    +++G SFLFYWLLAPN T+FRRNRALRG IAPFPG  GN  AIFSARV SA EE
Sbjct:    2 VLPVLATRDQWSHYWGGSDVQRVGKLFEVAAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALRGSIAPFPGARGNSVAIFSARVVSAVEE 107
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BLAST of mRNA_D-dudresnayi_contig10380.407.1 vs. uniprot
Match: D8LTW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW7_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.520e-36
Identity = 67/86 (77.91%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:  100 QRVGKLFEVSAVAFLGLWACYFTSFFLGSGATSLVGASFLFYWLLAPNTTAFRRNRALRGRIAPFPGGDGNYFAIFSARVASAKEE 357
            QRVGKLFEV+AVAFLGLWACYF SFFLG    +++G SFLFYWLLAPN T+FRRNRAL+G IAPFPG  GN  AIFSARVASA EE
Sbjct:   26 QRVGKLFEVAAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALKGSIAPFPGARGNSVAIFSARVASAVEE 111
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BLAST of mRNA_D-dudresnayi_contig10380.407.1 vs. uniprot
Match: A0A835YT15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT15_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.610e-25
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:   70 WEHFWGGSDMQRVGKLFEVSAVAFLGLWACYFTSFFLGSGATSLVGASFLFYWLLAPNTTAFRRNRALRGRIAPFPGGDGNYFAIFSARVASAKEEV 360
            W ++WG   +QR GK+ E  +VAFLG+WACYFTSFFLG   TS++G  F+FYWLL PN   +R+N   RG++AP P   G   A+FSA +A+  EEV
Sbjct:    8 WNNYWG-EGVQRAGKVAESFSVAFLGVWACYFTSFFLGVAITSVIGVVFVFYWLLGPNLLNYRKNWEFRGKLAPSPKEPGTRAALFSASIANVVEEV 103
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BLAST of mRNA_D-dudresnayi_contig10380.407.1 vs. uniprot
Match: K8Z4E0_NANGC (Putative membrane protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z4E0_NANGC)

HSP 1 Score: 103 bits (256), Expect = 8.240e-24
Identity = 47/114 (41.23%), Postives = 71/114 (62.28%), Query Frame = 1 
Query:    1 CGLTRLSGNAAHKVLPTLATRDQWEHFWGGSDMQRVGKLFEVSAVAFLGLWACYFTSFFLGSGATSLVGASFLFYWLLAPNTTAFRRNRALRGR-IAPFPGGDGNYFAIFSARV 339
            C LT L      ++LP+  T DQW+++WG ++  + GK++E ++  F GLW  +F +F +G  A +++G  FLFYW+LAP   A+RRN + RG   A  P  DG + A+FS RV
Sbjct:   27 CSLTVLRDRTLRRLLPSQFTGDQWKYYWGITESDKFGKIYEAASATFFGLWTSWFLTFLIGLPAATVLGTVFLFYWILAPGLAAYRRNVSFRGTYFARTPRDDGVFGALFSGRV 140
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BLAST of mRNA_D-dudresnayi_contig10380.407.1 vs. uniprot
Match: K8Z4B4_NANGC (Putative membrane protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z4B4_NANGC)

HSP 1 Score: 103 bits (256), Expect = 1.380e-23
Identity = 47/114 (41.23%), Postives = 71/114 (62.28%), Query Frame = 1 
Query:    1 CGLTRLSGNAAHKVLPTLATRDQWEHFWGGSDMQRVGKLFEVSAVAFLGLWACYFTSFFLGSGATSLVGASFLFYWLLAPNTTAFRRNRALRGR-IAPFPGGDGNYFAIFSARV 339
            C LT L      ++LP+  T DQW+++WG ++  + GK++E ++  F GLW  +F +F +G  A +++G  FLFYW+LAP   A+RRN + RG   A  P  DG + A+FS RV
Sbjct:   80 CSLTVLRDRTLRRLLPSQFTGDQWKYYWGITESDKFGKIYEAASATFFGLWTSWFLTFLIGLPAATVLGTVFLFYWILAPGLAAYRRNVSFRGTYFARTPRDDGVFGALFSGRV 193
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10380.407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KJB0_9PHAE2.100e-5178.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTW7_ECTSI1.520e-3677.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YT15_9STRA3.610e-2552.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8Z4E0_NANGC8.240e-2441.23Putative membrane protein n=1 Tax=Nannochloropsis ... [more]
K8Z4B4_NANGC1.380e-2341.23Putative membrane protein n=3 Tax=Monodopsidaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10380contigD-dudresnayi_contig10380:304..941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue1.4e-30
Seed eggNOG ortholog2880.D8LTW7
EggNOG OGs2E2W9@1,2SA2H@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_004040.1
Exons2
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927537.6930993-CDS-D-dudresnayi_contig10380:303..4621622927537.6930993-CDS-D-dudresnayi_contig10380:303..462Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10380 304..462 -
1690556798.3514562-CDS-D-dudresnayi_contig10380:303..4621690556798.3514562-CDS-D-dudresnayi_contig10380:303..462Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10380 304..462 -
1622927537.7059698-CDS-D-dudresnayi_contig10380:731..9411622927537.7059698-CDS-D-dudresnayi_contig10380:731..941Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10380 732..941 -
1690556798.3691628-CDS-D-dudresnayi_contig10380:731..9411690556798.3691628-CDS-D-dudresnayi_contig10380:731..941Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10380 732..941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10380.407.1prot_D-dudresnayi_contig10380.407.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10380 304..941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10380.407.1

>prot_D-dudresnayi_contig10380.407.1 ID=prot_D-dudresnayi_contig10380.407.1|Name=mRNA_D-dudresnayi_contig10380.407.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=123bp
CGLTRLSGNAAHKVLPTLATRDQWEHFWGGSDMQRVGKLFEVSAVAFLGL
WACYFTSFFLGSGATSLVGASFLFYWLLAPNTTAFRRNRALRGRIAPFPG
GDGNYFAIFSARVASAKEEVCV*
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mRNA from alignment at D-dudresnayi_contig10380:304..941-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10380.407.1 ID=mRNA_D-dudresnayi_contig10380.407.1|Name=mRNA_D-dudresnayi_contig10380.407.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=638bp|location=Sequence derived from alignment at D-dudresnayi_contig10380:304..941- (Desmarestia dudresnayi DdudBR16 monoicous)
TGCGGGCTGACTCGCCTGTCCGGGAACGCGGCGCACAAAGTGCTTCCCAC
CCTCGCGACTAGAGACCAGTGGGAGCACTTCTGGGGCGGCTCGGACATGC
AGCGGGTCGGCAAGCTTTTTGAGGTGTCCGCGGTCGCGTTCCTGGGATTG
TGGGCGTGTTACTTCACGAGTTTTTTCTTGGGCTCAGGGGCGACGTCTTT
GGTTGGAGCGGTAAGCCGTGCAAATCGATACACTGCTACCGGTAACGTGT
TGGAACAAACGATATTTTAACACGACGTATGTAGCGTCCAGCCCAACAAC
AACATTGGTGGTCCGTGCCAACCTACGTGGAACCGCCCCCCGCCCCGCCC
CCAGGCTGTTATTAATAGCAAGAACCCACTGTTACTTGCCAATCTCCAAA
TATAAACCCCGTAATCCCGCCCCGCCCCCGTGTCTGCCTTTTCCGCACGT
TTTCACTCCGACGATAACCTCGACAAAAGTCTTTCCTGTTCTATTGGTTG
TTGGCGCCGAACACGACCGCCTTTCGCCGAAATCGTGCTTTGCGAGGGAG
GATTGCCCCCTTTCCGGGAGGAGACGGGAACTATTTTGCCATCTTCAGCG
CTCGCGTGGCTAGTGCAAAGGAGGAGGTGTGTGTCTAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10380:304..941-

>mRNA_D-dudresnayi_contig10380.407.1 ID=mRNA_D-dudresnayi_contig10380.407.1|Name=mRNA_D-dudresnayi_contig10380.407.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at D-dudresnayi_contig10380:304..941- (Desmarestia dudresnayi DdudBR16 monoicous)
TGCGGGCTGACTCGCCTGTCCGGGAACGCGGCGCACAAAGTGCTTCCCAC
CCTCGCGACTAGAGACCAGTGGGAGCACTTCTGGGGCGGCTCGGACATGC
AGCGGGTCGGCAAGCTTTTTGAGGTGTCCGCGGTCGCGTTCCTGGGATTG
TGGGCGTGTTACTTCACGAGTTTTTTCTTGGGCTCAGGGGCGACGTCTTT
GGTTGGAGCGTGCGGGCTGACTCGCCTGTCCGGGAACGCGGCGCACAAAG
TGCTTCCCACCCTCGCGACTAGAGACCAGTGGGAGCACTTCTGGGGCGGC
TCGGACATGCAGCGGGTCGGCAAGCTTTTTGAGGTGTCCGCGGTCGCGTT
CCTGGGATTGTGGGCGTGTTACTTCACGAGTTTTTTCTTGGGCTCAGGGG
CGACGTCTTTGGTTGGAGCGTCTTTCCTGTTCTATTGGTTGTTGGCGCCG
AACACGACCGCCTTTCGCCGAAATCGTGCTTTGCGAGGGAGGATTGCCCC
CTTTCCGGGAGGAGACGGGAACTATTTTGCCATCTTCAGCGCTCGCGTGG
CTAGTGCAAAGGAGGAGGTGTGTGTCTAGTCTTTCCTGTTCTATTGGTTG
TTGGCGCCGAACACGACCGCCTTTCGCCGAAATCGTGCTTTGCGAGGGAG
GATTGCCCCCTTTCCGGGAGGAGACGGGAACTATTTTGCCATCTTCAGCG
CTCGCGTGGCTAGTGCAAAGGAGGAGGTGTGTGTCTAG
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