mRNA_D-dudresnayi_contig10361.384.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10361.384.1
Unique NamemRNA_D-dudresnayi_contig10361.384.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10361.384.1 vs. uniprot
Match: A0A7S0QBW6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QBW6_9EUKA)

HSP 1 Score: 180 bits (456), Expect = 1.550e-55
Identity = 113/115 (98.26%), Postives = 113/115 (98.26%), Query Frame = 2
Query:    2 ETFCFVSSNMTLSYQVTGADKDQLVTSLAAIILSDCGADISADAINSVLSASGNTVPAYYPTLYASYIEKAGGLEKFFAGPSAGAAPXXXXXXXXXXXXXXXXVVEKAAVEEVDA 346
            ETFCFVSSNMTLSYQVTGADKDQLVTSLAAIILSDCGADISADAINSVLSASGNTVPAYYPTLYASYIEKAGGLEKFFAGPSAGAAPXXXXXXXXXXXXXXX VVEKA VEEVDA
Sbjct:    1 ETFCFVSSNMTLSYQVTGADKDQLVTSLAAIILSDCGADISADAINSVLSASGNTVPAYYPTLYASYIEKAGGLEKFFAGPSAGAAPXXXXXXXXXXXXXXXPVVEKAKVEEVDA 115          
BLAST of mRNA_D-dudresnayi_contig10361.384.1 vs. uniprot
Match: A0A7S3HK71_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HK71_9STRA)

HSP 1 Score: 140 bits (353), Expect = 9.250e-40
Identity = 92/117 (78.63%), Postives = 105/117 (89.74%), Query Frame = 2
Query:   29 MTLSYQVTGADKDQLVTSLAAIILSDCGADISADAINSVLSASGNTVPAYYPTLYASYIEKAGGLEKFFAGPSAGAAPXXXXXXXXXXXXXXXXVVEKAA-VEEVDALDGGMDMFGG 376
            MTLSYQVTGADKDQLVTSLAAI+LSD GADI+A+++N+V++ASGN VPAYY TL+AS+IEK+GGL+KFFAGPSAG A  XXXXXXXXXXXXXXX    A  VEEVDAL+GGMDMFGG
Sbjct:    1 MTLSYQVTGADKDQLVTSLAAIVLSDSGADITAESLNAVIAASGNQVPAYYATLFASFIEKSGGLDKFFAGPSAGGAAAXXXXXXXXXXXXXXXXXAPAPKVEEVDALEGGMDMFGG 117          
BLAST of mRNA_D-dudresnayi_contig10361.384.1 vs. uniprot
Match: A0A482S1F3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1F3_9ARCH)

HSP 1 Score: 112 bits (281), Expect = 2.360e-29
Identity = 57/77 (74.03%), Postives = 69/77 (89.61%), Query Frame = 2
Query:   29 MTLSYQVTGADKDQLVTSLAAIILSDCGADISADAINSVLSASGNTVPAYYPTLYASYIEKAGGLEKFFAGPSAGAA 259
            M LS+QVTG +KDQLV SLAA++LSD GA+ISAD+++SVLSAS NTVPAYYPTL+A +IEKAGG++KF AGPSAG A
Sbjct:    1 MPLSFQVTGPEKDQLVVSLAALLLSDVGAEISADSLSSVLSASNNTVPAYYPTLFAGFIEKAGGVDKFLAGPSAGGA 77          
BLAST of mRNA_D-dudresnayi_contig10361.384.1 vs. uniprot
Match: A0A485K4L7_9STRA (Aste57867_42 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K4L7_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.070e-17
Identity = 62/110 (56.36%), Postives = 76/110 (69.09%), Query Frame = 2
Query:   50 TGADKDQLVTSLAAIILSDCGADISADAINSVLSASGNTVPAYYPTLYASYIEKAGGLEKFFAGPSAGAAPXXXXXXXXXXXXXXXXVVEKAAVEEVDALDGGMDMFGGG 379
            T + K+ L TSLA ++L+D GAD++AD +   L+A+G TV AY PTLYA+ +E+   +EK  AGPSAGAAP  XXXXXXXXXXXX    EK        L GGMDMFGGG
Sbjct:    7 TASQKEDLATSLAVLLLTDAGADVTADNVTEALNAAGVTVAAYLPTLYANAVERGLKVEKALAGPSAGAAPAAXXXXXXXXXXXXAKE-EKXXXXXXADLGGGMDMFGGG 115          
BLAST of mRNA_D-dudresnayi_contig10361.384.1 vs. uniprot
Match: A0A7S2UUV6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUV6_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.240e-17
Identity = 62/111 (55.86%), Postives = 81/111 (72.97%), Query Frame = 2
Query:   47 VTGADKDQLVTSLAAIILSDCGADISADAINSVLSASGNTVPAYYPTLYASYIEKAGGLEKFFAGPSAGAAPXXXXXXXXXXXXXXXXVVEKAAVEEVDALDGGMDMFGGG 379
            ++GA K+++V SLAA++L+D G D+SAD +N+V+SASGN +  Y+ TL+AS++EKAGG++KF   P AG   XXXXXXXXXXXXXXXX              GGMDMFGGG
Sbjct:    6 LSGAAKEEMVVSLAALVLADSGVDMSADNLNAVVSASGNDIAPYWSTLFASFLEKAGGVDKFCGAPGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAEDIGGMDMFGGG 116          
BLAST of mRNA_D-dudresnayi_contig10361.384.1 vs. uniprot
Match: A0A6T7KSJ6_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A6T7KSJ6_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 2.790e-15
Identity = 70/119 (58.82%), Postives = 84/119 (70.59%), Query Frame = 2
Query:   47 VTGADKDQLVTSLAAIILSDCGADISADAINSVLSASGNTVPAYYPTLYASYIEKAGGLEK--FFAGPSAGAAPXXXXXXXXXXXXXXXXVVEKAAVEEVDALDGGMDMFGGGXXXGDY 397
            + GA+KD+ VTSLAA+ L D  A+I+A  I+++L+AS N V  Y+P L+A  + K G  EK  F  G +   A  XXXXXXXXXXXXXXX    A VEEVDALDGGMDMFGG XXXGDY
Sbjct:    4 IYGANKDEFVTSLAALCLYDGEAEITAANISTLLAASNNVVAPYWPGLFAGLL-KDGNAEKLVFSVGSAPAPAAGXXXXXXXXXXXXXXXXXXXAKVEEVDALDGGMDMFGGXXXXGDY 121          
BLAST of mRNA_D-dudresnayi_contig10361.384.1 vs. uniprot
Match: W7TDP6_9STRA (60s acidic ribosomal protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TDP6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.100e-14
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   44 QVTGADKDQLVTSLAAIILSDCGADISADAINSVLSASGNTVPAYYPTLYASYIEKAGG-LEKFFAGPSAG 253
            +++ A K+++V SL+A++L D G D+SA+ +++V+ ASGNTV AYYP LYAS IEKAGG L+KF   P AG
Sbjct:    5 ELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDKFMGAPGAG 75          
BLAST of mRNA_D-dudresnayi_contig10361.384.1 vs. uniprot
Match: A0A6V1KRU0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KRU0_HETAK)

HSP 1 Score: 73.6 bits (179), Expect = 1.080e-13
Identity = 34/70 (48.57%), Postives = 58/70 (82.86%), Query Frame = 2
Query:   44 QVTGADKDQLVTSLAAIILSDCGADISADAINSVLSASGNTVPAYYPTLYASYIEKAGGLEKFFAGPSAG 253
            +++GA K++LV SLA+++++D  AD+SA+ + +V+ ASGN+V +Y+ +L+AS++EK+ G+EKF AGP AG
Sbjct:    5 ELSGAAKEELVVSLASLVVADSDADLSAENLEAVIKASGNSVASYWTSLFASFLEKSEGVEKFCAGPGAG 74          
BLAST of mRNA_D-dudresnayi_contig10361.384.1 vs. uniprot
Match: A0A8K1C295_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C295_PYTOL)

HSP 1 Score: 71.2 bits (173), Expect = 8.370e-13
Identity = 58/111 (52.25%), Postives = 74/111 (66.67%), Query Frame = 2
Query:   47 VTGADKDQLVTSLAAIILSDCGADISADAINSVLSASGNTVPAYYPTLYASYIEKAGGLEKFFAGPSAGAAPXXXXXXXXXXXXXXXXVVEKAAVEEVDALDGGMDMFGGG 379
            +T   K++L TSLA + + D  A+ISA+ +++ L ASGN+V AY P L+A  I +   ++KF AGPSAGAAP  XXXXXXXXXXXXXX         +    GGMDMFGGG
Sbjct:    6 LTPIQKEELATSLAVLAVYDASAEISAENLSAALKASGNSVSAYLPQLFADLIGRGLTIDKFLAGPSAGAAPAGXXXXXXXXXXXXXXXXXXXXXXXIG---GGMDMFGGG 113          
BLAST of mRNA_D-dudresnayi_contig10361.384.1 vs. uniprot
Match: A0A835YLZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLZ6_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.330e-12
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   44 QVTGADKDQLVTSLAAIILSDCGADISADAINSVLSASGNTVPAYYPTLYASYIEKAGGLEKFFAGPSAG 253
            ++T   K ++V SLAA++  D G ++SA+ +NS +SASGN V  Y+ +L+ASY+EKAGG EKF   P +G
Sbjct:    5 ELTEGQKSEMVVSLAALLCEDAGVELSAENLNSAVSASGNKVAPYWTSLFASYLEKAGGCEKFMGKPGSG 74          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10361.384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0QBW6_9EUKA1.550e-5598.26Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S3HK71_9STRA9.250e-4078.63Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482S1F3_9ARCH2.360e-2974.03Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A485K4L7_9STRA1.070e-1756.36Aste57867_42 protein n=1 Tax=Aphanomyces stellatus... [more]
A0A7S2UUV6_9STRA2.240e-1755.86Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6T7KSJ6_9EUKA2.790e-1558.82Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
W7TDP6_9STRA1.100e-1454.9360s acidic ribosomal protein n=2 Tax=Monodopsidace... [more]
A0A6V1KRU0_HETAK1.080e-1348.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8K1C295_PYTOL8.370e-1352.25Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A835YLZ6_9STRA1.330e-1248.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10361contigD-dudresnayi_contig10361:424..1056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.5e-11
Seed eggNOG ortholog157072.XP_008871850.1
KEGG koko:K02942
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
EggNOG OGs2D6V1@1,2S57R@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons2
Model size545
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10361.384.1prot_D-dudresnayi_contig10361.384.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10361 452..911 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927534.6950774-UTR-D-dudresnayi_contig10361:423..4511622927534.6950774-UTR-D-dudresnayi_contig10361:423..451Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10361 424..451 +
1690556797.0254698-UTR-D-dudresnayi_contig10361:423..4511690556797.0254698-UTR-D-dudresnayi_contig10361:423..451Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10361 424..451 +
1622927534.7364295-UTR-D-dudresnayi_contig10361:911..10561622927534.7364295-UTR-D-dudresnayi_contig10361:911..1056Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10361 912..1056 +
1690556797.062139-UTR-D-dudresnayi_contig10361:911..10561690556797.062139-UTR-D-dudresnayi_contig10361:911..1056Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10361 912..1056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927534.7125213-CDS-D-dudresnayi_contig10361:451..6801622927534.7125213-CDS-D-dudresnayi_contig10361:451..680Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10361 452..680 +
1690556797.0382314-CDS-D-dudresnayi_contig10361:451..6801690556797.0382314-CDS-D-dudresnayi_contig10361:451..680Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10361 452..680 +
1622927534.7248127-CDS-D-dudresnayi_contig10361:768..9111622927534.7248127-CDS-D-dudresnayi_contig10361:768..911Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10361 769..911 +
1690556797.0474331-CDS-D-dudresnayi_contig10361:768..9111690556797.0474331-CDS-D-dudresnayi_contig10361:768..911Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10361 769..911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10361.384.1

>prot_D-dudresnayi_contig10361.384.1 ID=prot_D-dudresnayi_contig10361.384.1|Name=mRNA_D-dudresnayi_contig10361.384.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=124bp
MTLSYQVTGADKDQLVTSLAAIILSDCGADISADAINSVLSASGNTVPAY
YPTLYASYIEKAGGLEKFFAGPSAGAAPAAGGAAPAAGAAAAAPVVEKAA
VEEVDALDGGMDMFGGGGGGGDY*
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mRNA from alignment at D-dudresnayi_contig10361:424..1056+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10361.384.1 ID=mRNA_D-dudresnayi_contig10361.384.1|Name=mRNA_D-dudresnayi_contig10361.384.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=633bp|location=Sequence derived from alignment at D-dudresnayi_contig10361:424..1056+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGAAACTTTCTGCTTTGTCTCTTCAAATATGACTCTATCTTACCAAGTGA CTGGTGCCGATAAGGACCAACTGGTGACCTCTCTGGCTGCCATCATCCTC AGCGATTGCGGTGCTGATATCTCCGCTGATGCCATCAACTCTGTGCTGTC CGCTTCCGGCAACACCGTCCCCGCTTACTACCCCACCCTGTACGCCTCTT ACATCGAGAAGGCTGGTGGCCTTGAGAAGTTCTTCGCTGGACCTTCTGCC GGTGCTGGTGAGTATTATTTTAAGCTTTCTTTGTGTTTTTTAACCAGAAA TTTAAATTATTGTATGTTATCATTTATCTTTCCCGTTTTATCTAGCCCCT GCTGCTGGTGGTGCTGCCCCTGCTGCCGGTGCTGCTGCCGCTGCTCCTGT GGTTGAGAAGGCCGCGGTCGAGGAGGTCGATGCCCTTGATGGTGGCATGG ACATGTTCGGCGGTGGAGGCGGAGGTGGAGACTATTAAGCGCTCCACTTT GTTGTTATACATTCGTTGAATCTGGAGCAGAAAGTTTGTTTATAAATAAC ATTTATAAGATTGCTTGTGAAGGATTTAGATATTTTAGTTCTAATCAAGT GATTCTATAATGTAAAAATTCCCATAAAAAACA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10361:424..1056+

>mRNA_D-dudresnayi_contig10361.384.1 ID=mRNA_D-dudresnayi_contig10361.384.1|Name=mRNA_D-dudresnayi_contig10361.384.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at D-dudresnayi_contig10361:424..1056+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGACTCTATCTTACCAAGTGACTGGTGCCGATAAGGACCAACTGGTGAC
CTCTCTGGCTGCCATCATCCTCAGCGATTGCGGTGCTGATATCTCCGCTG
ATGCCATCAACTCTGTGCTGTCCGCTTCCGGCAACACCGTCCCCGCTTAC
TACCCCACCCTGTACGCCTCTTACATCGAGAAGGCTGGTGGCCTTGAGAA
GTTCTTCGCTGGACCTTCTGCCGGTGCTGATGACTCTATCTTACCAAGTG
ACTGGTGCCGATAAGGACCAACTGGTGACCTCTCTGGCTGCCATCATCCT
CAGCGATTGCGGTGCTGATATCTCCGCTGATGCCATCAACTCTGTGCTGT
CCGCTTCCGGCAACACCGTCCCCGCTTACTACCCCACCCTGTACGCCTCT
TACATCGAGAAGGCTGGTGGCCTTGAGAAGTTCTTCGCTGGACCTTCTGC
CGGTGCTGCCCCTGCTGCTGGTGGTGCTGCCCCTGCTGCCGGTGCTGCTG
CCGCTGCTCCTGTGGTTGAGAAGGCCGCGGTCGAGGAGGTCGATGCCCTT
GATGGTGGCATGGACATGTTCGGCGGTGGAGGCGGAGGTGGAGACTATTA
ACCCCTGCTGCTGGTGGTGCTGCCCCTGCTGCCGGTGCTGCTGCCGCTGC
TCCTGTGGTTGAGAAGGCCGCGGTCGAGGAGGTCGATGCCCTTGATGGTG
GCATGGACATGTTCGGCGGTGGAGGCGGAGGTGGAGACTATTAA
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