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Homology
BLAST of mRNA_D-dudresnayi_contig10356.377.1 vs. uniprot
Match: D8LQQ1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ1_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 3.130e-15 Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 1
Query: 1552 FIPDKMVSVDMGAAWIHGTSGNPVTALCEKCSLSMFNTGSPTLFVDYNGR 1701
F+PDKMVSVDMGAAWIHGT+ NP+TALCEK SL +FNTGSPT+ VD++GR
Sbjct: 795 FVPDKMVSVDMGAAWIHGTTKNPITALCEKFSLGLFNTGSPTVMVDHDGR 844
BLAST of mRNA_D-dudresnayi_contig10356.377.1 vs. uniprot
Match: A0A6H5KIY4_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY4_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 3.400e-15 Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 1
Query: 1552 FIPDKMVSVDMGAAWIHGTSGNPVTALCEKCSLSMFNTGSPTLFVDYNGR 1701
F+PDKMVSVDMGAAWIHGT+ NP+TALCEK SL +FNTGSPT+ VD++GR
Sbjct: 1006 FVPDKMVSVDMGAAWIHGTTKNPITALCEKFSLGLFNTGSPTVMVDHDGR 1055
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 97.8 |
| Seed ortholog evalue | 1.7e-17 |
| Seed eggNOG ortholog | 2880.D8LQQ1 |
| KEGG ko | ko:K11450 |
| KEGG Pathway | ko04714,map04714 |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006476,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008213,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0016575,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0022622,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0035601,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048364,GO:0048731,GO:0048856,GO:0051276,GO:0051568,GO:0071704,GO:0071840,GO:0098732,GO:0099402,GO:1901564 |
| EggNOG free text desc. | SET domain |
| EggNOG OGs | COG1231@1,COG2940@1,KOG0029@2759,KOG1084@2759 |
| COG Functional cat. | K |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03036 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1704 |
| Cds size | 1704 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig10356.377.1 >prot_D-dudresnayi_contig10356.377.1 ID=prot_D-dudresnayi_contig10356.377.1|Name=mRNA_D-dudresnayi_contig10356.377.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=568bp
GRGRGRGSGTGKGGGGGRGRGRGRGRGPGGLLAEAAAFIGVVDGQLTKME
VSSDDERGTVRRAGQHTGGSAGGVKRRRTNAISKGSGVASGQVQMGFEGG
CYLSTQIHNRRYLGVMLEADEVIAAVTAATAAASREGRAGANARGPPSLL
DLLILKQIRGSMPDFDPVNLVVLPSPSSPAVPQYQHQQQPPTVAAAVSAS
ASLVSSAAVVRRQSANLLPHAEAPVASAAERDPPAGDTRDLLRSRTDPWV
QQLERQQQQQQQQPQQPESVPNGKRRRPNVPRAAVARQRVGGRCYTKRWI
SSGSQTAAAPQRASSSSSPRAAAAGSRSAPSAKTSGQQQQHQQQQRQQQS
PAGADNRSRAVTTATSTPTPPPPQQPVGSDGAMAGAVPPAGGTEERTAHV
GPRVENVALRPSGGVETAGATAGVGTNGHPPVSAHGGTAPPSVGEQRVSG
ASSSSTGKVLRGEEAVVAAGVTGKAPGSSAGGSSPAATVGGEGKGQGAAV
PVAMDVADVERGVMESPFIPDKMVSVDMGAAWIHGTSGNPVTALCEKCSL
SMFNTGSPTLFVDYNGR* back to topmRNA from alignment at D-dudresnayi_contig10356:6418..10220+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig10356.377.1 ID=mRNA_D-dudresnayi_contig10356.377.1|Name=mRNA_D-dudresnayi_contig10356.377.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3803bp|location=Sequence derived from alignment at D-dudresnayi_contig10356:6418..10220+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGGCGAGGGAGAGGGAGAGGAAGCGGGACAGGGAAGGGGGGGGGGGGGGG
GAGAGGCAGGGGGCGGGGACGCGGCAGAGGACCGGGCGGTTTGCTTGCGG
AAGCTGCGGCGTTTATAGGAGTTGTGGACGGGCAGCTGACTAAGATGGAG
GTGTCGAGCGATGACGAGAGAGGGACGGTGCGGCGGGCCGGGCAACATAC
TGGTGGCAGCGCGGGGGGAGTCAAGCGGCGACGTACTAACGCGATCTCGA
AAGGCTCTGGGGTTGCGTCGGGTCAAGTGCAGATGGGGTTCGAGGGGGGC
TGCTACTTATCGACGCAGGTATGTATATAGATGCGTTTAATGCAAAAATG
ATGTCGGCGAGTGCTTTGATGCGTGTTAGGTGAGAGGGTTACTTCACTTG
ACTGCTTGCTTCGCAGGGGTATTTATAAAGAGCTTGTGGTTGTGGCTCGC
ATCGGGTCAACGTATTTTGAGGTGGCTCCGCGATTGCAGTGTGGTTTTGG
TGTTTCGGGACATCTGTCTTGCAGGCGTGGTCAAGGAACGGCCCTTTTGA
GAAAACAAATACTTTTTCGGGATTGTCGGCGTTTGTGGTTGTTGCATCAG
AGCTACTGGCGTTTATTGGTGGGGACGGGGGTTAGCTTCAGGTCATTCTG
GCCGGTCGCTGTGGCTGGCAAAATTTCTGCATCATTTTTTTTTTTTTCGG
GTATAATGGAGATGTACTATCATACGTATGACAGGTCTCCACGGCTACTT
GGTGTTGTGGTTAGTGCTTTTGCAGCAACATGGCTTTTAAAACCTCGTGT
ATTCTCCATGCCTTGGGGTACATGTTGCCGCGGCGTTGCACTGAAGAGTT
AAGATAAATCACCGCTGGTTTGCACGCCGTGTCCGGCTTTTTAACCGTAA
GAGTGGACAAATAATTCGAGGGGACAAAGATGAATGCGTTCCCACCGATG
CCTCGTTTTCATCTTCGAGGAGCCACACCGTGTTTTTACAATAAAATAAA
AAAAAAAACCAAACATACAAGCACAACAAACAACCAACGAAACAAACGCG
CTGTCGCCACGACGCAAGCGGACTCGGGGCCACGAGCGCTTACGGCGGTC
TTATCTTGAGGGGGACACCTCAATACATACAACCTTCGTACTTCGCTGCT
CCCGCCACCTATTTTGTGGGCTGTGCAGATTCACAACCGACGCTACCTCG
GAGTTATGCTGGAAGCCGATGAGGTTATCGCCGCTGTGACCGCAGCAACG
GCCGCAGCGTCGCGCGAGGGGCGTGCCGGGGCGAATGCGGTAAGCGAAAG
AAGAAAGGAAAACTTTGTAGCAATGCGCGGGGAAACCGGTCGCCGAAACA
TCGTCTGCGGTATTATGTGTGATGAGCTCTGACTCGTCGAACACGGAATG
CATGTACGGTGACAGTGCAGTGCAGTGCAGTTTGTTTTTTTTGCGACGGA
GCCGACTTCTCGTTGTCTGTAAAATCTCATTGCTCCTCGATTCGCTCGTG
AGGTCATCGTCAGCTGGTTAAAATCACTTCGCACGGTAATGTGTCCCCGC
ACAATAATACACACACTCACTCACTCGCTCACTCCCGACGTCAACCACCG
TACGGCGGCGATGCAGCGGGGACCCCCCAGCCTCCTGGACCTTCTAATTC
TCAAGCAGATCCGAGGAAGCATGCCGGACTTCGACCCTGTCAATCTCGTC
GTCCTTCCGAGCCCGTCGTCACCCGCCGTGCCCCAATATCAGCACCAGCA
GCAGCCCCCCACCGTGGCCGCGGCAGTCTCTGCTTCCGCGTCCCTCGTAA
GCTCGGCCGCGGTCGTGCGCCGGCAATCGGCGAACCTGTTGCCTCACGCC
GAAGCGCCGGTGGCCTCAGCAGCCGAGCGTGATCCGCCGGCTGGTGACAC
GAGGGACCTGCTTCGTTCTAGGACGGACCCCTGGGTTCAGCAGCTGGAGC
GGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCAGCCTGAGTCGGTGCCG
AATGGGAAGCGTCGTCGGCCGAATGTTCCTCGGGCAGCGGTGGTGGGAGA
AGCGGGGGCTTGGAAGGAGGGGGAGGGGGCGGGGACTAAATTTTCCGCGG
CGGCGGCGGCGTTGATGTCGGGGCCGATAGTGGTACCGTCCTTGGGGAGG
CCTCACCGAGTGGTCGTTGTTGGCGCGGGGTTTGCGGGGATCGGGGCCGC
GTTAGAGCTGCAGCGGCTCGGTATAGAGGTGGTCGTGTTGGAGGTGAGGG
GGAAAATGCCGACCCACTCACTCACTGCAAAGGACGCAAGTAGGGGCATT
TTTGTTTTTTAGGGAGAGGGGCGAGGTTGATGTTTTTGATTGATTGAATG
TGCTTTCTGATTGTTTTCCATGTGGAAGGGTGGGGAAGAGGTTTTTCTTG
CTTGTTTTTTTCTCGTTTTTATGTAAGTGCTCTCTCTCCTCTCGTGTGTC
GCTCGTGTTTTGACTGTTTGAGGATTGCCCCGCCATATTTGCAGCGCCTG
GCGGCGTCTACCCTCTCGTCGTGTGTGGGGGCAAAAAACAACCGCTATTC
CCCCCCCCCCCCCCTACCGCCATTCCCTCTCGTCGATCAAATAGGCTAGG
CAGAGGGTCGGTGGCCGTTGCTACACAAAGCGATGGATCTCCAGCGGCAG
TCAAACCGCGGCCGCCCCTCAGCGCGCCTCTTCCTCGTCCTCCCCCCGCG
CCGCGGCAGCAGGGTCTAGATCCGCACCGTCTGCCAAGACCAGCGGGCAG
CAACAGCAGCATCAGCAGCAGCAACGGCAGCAGCAGAGCCCCGCTGGCGC
CGATAATCGATCCCGGGCTGTAACCACGGCGACGTCGACACCAACCCCGC
CGCCGCCACAACAACCAGTCGGTTCTGACGGCGCGATGGCCGGTGCTGTT
CCTCCTGCGGGAGGGACCGAGGAGCGTACGGCACATGTCGGCCCACGGGT
GGAAAACGTGGCCTTGCGTCCTTCGGGGGGTGTCGAAACTGCTGGGGCTA
CGGCGGGTGTTGGAACAAATGGACACCCCCCCGTCTCGGCGCACGGGGGA
ACGGCACCACCGAGCGTCGGCGAGCAACGGGTAAGCGGTGCGTCGAGTAG
CAGCACTGGGAAGGTGCTGCGCGGCGAAGAAGCGGTCGTGGCGGCGGGTG
TGACGGGGAAGGCCCCGGGGAGCTCCGCTGGTGGGAGTTCCCCGGCAGCA
ACAGTTGGCGGTGAGGGAAAGGGGCAGGGGGCTGCTGTACCGGTGGCGAT
GGACGTTGCAGACGTTGAGAGGGGGGTGATGGAGAGTCCGTTCATCCCCG
ACAAAATGGTGAGACCATTAGATGGAAGGCGTTCGATGATATTCGAGGGG
AGAGAGTCGGAGTAGGCGGTGTTGGGGTAGCAAACAGCGTATGATACTAT
TGTGCGACTATAACAGTGTATAATTAGGCCGTTCGGTAACGCGTAAGCAT
CCAAGCCGGTGGTGTTGCAGCCGCAGCCGTAGCCGTAGTCGTGGGACTTG
CTTGCCTCTTTCTTGTCGGCGTCCTGGCTCGGTGAAATCTCGGCATGCCG
CTTTGTGCCGGTATCGTAGCGCTGCGAGGTCAATGGGCAATCACTCTTTG
CCCGTGGCGTATTTTGTTTTACGAGTACACCAATTATAACCCCCCACACC
CCCCTAACCCCCAAACAGGTGAGTGTAGATATGGGCGCCGCGTGGATCCA
CGGCACCTCTGGAAATCCCGTGACGGCGCTGTGTGAGAAGTGTTCCCTGT
CGATGTTCAACACCGGCAGCCCGACTCTCTTCGTCGACTACAACGGCCGG
TGA back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig10356:6418..10220+ >mRNA_D-dudresnayi_contig10356.377.1 ID=mRNA_D-dudresnayi_contig10356.377.1|Name=mRNA_D-dudresnayi_contig10356.377.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=3408bp|location=Sequence derived from alignment at D-dudresnayi_contig10356:6418..10220+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGGCGAGGGAGAGGGAGAGGAAGCGGGACAGGGAAGGGGGGGGGGGGGGG
GAGAGGCAGGGGGCGGGGACGCGGCAGAGGACCGGGCGGTTTGCTTGCGG
AAGCTGCGGCGTTTATAGGAGTTGTGGACGGGCAGCTGACTAAGATGGAG
GTGTCGAGCGATGACGAGAGAGGGACGGTGCGGCGGGCCGGGCAACATAC
TGGTGGCAGCGCGGGGGGAGTCAAGCGGCGACGTACTAACGCGATCTCGA
AAGGCTCTGGGGTTGCGTCGGGTCAAGTGCAGATGGGGTTCGAGGGGGGC
TGCTACTTATCGACGCAGGGGCGAGGGAGAGGGAGAGGAAGCGGGACAGG
GAAGGGGGGGGGGGGGGGGAGAGGCAGGGGGCGGGGACGCGGCAGAGGAC
CGGGCGGTTTGCTTGCGGAAGCTGCGGCGTTTATAGGAGTTGTGGACGGG
CAGCTGACTAAGATGGAGGTGTCGAGCGATGACGAGAGAGGGACGGTGCG
GCGGGCCGGGCAACATACTGGTGGCAGCGCGGGGGGAGTCAAGCGGCGAC
GTACTAACGCGATCTCGAAAGGCTCTGGGGTTGCGTCGGGTCAAGTGCAG
ATGGGGTTCGAGGGGGGCTGCTACTTATCGACGCAGATTCACAACCGACG
CTACCTCGGAGTTATGCTGGAAGCCGATGAGGTTATCGCCGCTGTGACCG
CAGCAACGGCCGCAGCGTCGCGCGAGGGGCGTGCCGGGGCGAATGCGATT
CACAACCGACGCTACCTCGGAGTTATGCTGGAAGCCGATGAGGTTATCGC
CGCTGTGACCGCAGCAACGGCCGCAGCGTCGCGCGAGGGGCGTGCCGGGG
CGAATGCGCGGGGACCCCCCAGCCTCCTGGACCTTCTAATTCTCAAGCAG
ATCCGAGGAAGCATGCCGGACTTCGACCCTGTCAATCTCGTCGTCCTTCC
GAGCCCGTCGTCACCCGCCGTGCCCCAATATCAGCACCAGCAGCAGCCCC
CCACCGTGGCCGCGGCAGTCTCTGCTTCCGCGTCCCTCGTAAGCTCGGCC
GCGGTCGTGCGCCGGCAATCGGCGAACCTGTTGCCTCACGCCGAAGCGCC
GGTGGCCTCAGCAGCCGAGCGTGATCCGCCGGCTGGTGACACGAGGGACC
TGCTTCGTTCTAGGACGGACCCCTGGGTTCAGCAGCTGGAGCGGCAGCAG
CAGCAGCAGCAGCAGCAGCCGCAGCAGCCTGAGTCGGTGCCGAATGGGAA
GCGTCGTCGGCCGAATGTTCCTCGGGCAGCGGTGCGGGGACCCCCCAGCC
TCCTGGACCTTCTAATTCTCAAGCAGATCCGAGGAAGCATGCCGGACTTC
GACCCTGTCAATCTCGTCGTCCTTCCGAGCCCGTCGTCACCCGCCGTGCC
CCAATATCAGCACCAGCAGCAGCCCCCCACCGTGGCCGCGGCAGTCTCTG
CTTCCGCGTCCCTCGTAAGCTCGGCCGCGGTCGTGCGCCGGCAATCGGCG
AACCTGTTGCCTCACGCCGAAGCGCCGGTGGCCTCAGCAGCCGAGCGTGA
TCCGCCGGCTGGTGACACGAGGGACCTGCTTCGTTCTAGGACGGACCCCT
GGGTTCAGCAGCTGGAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAG
CAGCCTGAGTCGGTGCCGAATGGGAAGCGTCGTCGGCCGAATGTTCCTCG
GGCAGCGGTGGCTAGGCAGAGGGTCGGTGGCCGTTGCTACACAAAGCGAT
GGATCTCCAGCGGCAGTCAAACCGCGGCCGCCCCTCAGCGCGCCTCTTCC
TCGTCCTCCCCCCGCGCCGCGGCAGCAGGGTCTAGATCCGCACCGTCTGC
CAAGACCAGCGGGCAGCAACAGCAGCATCAGCAGCAGCAACGGCAGCAGC
AGAGCCCCGCTGGCGCCGATAATCGATCCCGGGCTGTAACCACGGCGACG
TCGACACCAACCCCGCCGCCGCCACAACAACCAGTCGGTTCTGACGGCGC
GATGGCCGGTGCTGTTCCTCCTGCGGGAGGGACCGAGGAGCGTACGGCAC
ATGTCGGCCCACGGGTGGAAAACGTGGCCTTGCGTCCTTCGGGGGGTGTC
GAAACTGCTGGGGCTACGGCGGGTGTTGGAACAAATGGACACCCCCCCGT
CTCGGCGCACGGGGGAACGGCACCACCGAGCGTCGGCGAGCAACGGGTAA
GCGGTGCGTCGAGTAGCAGCACTGGGAAGGTGCTGCGCGGCGAAGAAGCG
GTCGTGGCGGCGGGTGTGACGGGGAAGGCCCCGGGGAGCTCCGCTGGTGG
GAGTTCCCCGGCAGCAACAGTTGGCGGTGAGGGAAAGGGGCAGGGGGCTG
CTGTACCGGTGGCGATGGACGTTGCAGACGTTGAGAGGGGGGTGATGGAG
AGTCCGTTCATCCCCGACAAAATGGCTAGGCAGAGGGTCGGTGGCCGTTG
CTACACAAAGCGATGGATCTCCAGCGGCAGTCAAACCGCGGCCGCCCCTC
AGCGCGCCTCTTCCTCGTCCTCCCCCCGCGCCGCGGCAGCAGGGTCTAGA
TCCGCACCGTCTGCCAAGACCAGCGGGCAGCAACAGCAGCATCAGCAGCA
GCAACGGCAGCAGCAGAGCCCCGCTGGCGCCGATAATCGATCCCGGGCTG
TAACCACGGCGACGTCGACACCAACCCCGCCGCCGCCACAACAACCAGTC
GGTTCTGACGGCGCGATGGCCGGTGCTGTTCCTCCTGCGGGAGGGACCGA
GGAGCGTACGGCACATGTCGGCCCACGGGTGGAAAACGTGGCCTTGCGTC
CTTCGGGGGGTGTCGAAACTGCTGGGGCTACGGCGGGTGTTGGAACAAAT
GGACACCCCCCCGTCTCGGCGCACGGGGGAACGGCACCACCGAGCGTCGG
CGAGCAACGGGTAAGCGGTGCGTCGAGTAGCAGCACTGGGAAGGTGCTGC
GCGGCGAAGAAGCGGTCGTGGCGGCGGGTGTGACGGGGAAGGCCCCGGGG
AGCTCCGCTGGTGGGAGTTCCCCGGCAGCAACAGTTGGCGGTGAGGGAAA
GGGGCAGGGGGCTGCTGTACCGGTGGCGATGGACGTTGCAGACGTTGAGA
GGGGGGTGATGGAGAGTCCGTTCATCCCCGACAAAATGGTGAGTGTAGAT
ATGGGCGCCGCGTGGATCCACGGCACCTCTGGAAATCCCGTGACGGCGCT
GTGTGAGAAGTGTTCCCTGTCGATGTTCAACACCGGCAGCCCGACTCTCT
TCGTCGACTACAACGGCCGGTGAGTGAGTGTAGATATGGGCGCCGCGTGG
ATCCACGGCACCTCTGGAAATCCCGTGACGGCGCTGTGTGAGAAGTGTTC
CCTGTCGATGTTCAACACCGGCAGCCCGACTCTCTTCGTCGACTACAACG
GCCGGTGA back to top
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