mRNA_D-dudresnayi_contig1034.361.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1034.361.1
Unique NamemRNA_D-dudresnayi_contig1034.361.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig1034.361.1 vs. uniprot
Match: A0A6H5KCM2_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM2_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.070e-12
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:  364 LRGSCDFCTKRKRRCDGDGVNRCSFCVAKNQPECHYSYRLPTGPR 498
            +R SCDFC  RK+RCDGDGVNRCS+C+ K  P C YS R P  PR
Sbjct:   45 IRKSCDFCNGRKKRCDGDGVNRCSYCIIKKNPHCIYSPRRPQKPR 89
[Close]
BLAST of mRNA_D-dudresnayi_contig1034.361.1 vs. uniprot
Match: A0A6H5K678_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K678_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.550e-9
Identity = 38/91 (41.76%), Postives = 48/91 (52.75%), Query Frame = 1 
Query:  235 ENGSTSGPLGVQKQQHPRIDFIPTAAVSVSAGGNASSAPPGRR-----LRGSCDFCTKRKRRCDGDGVNRCSFCVAKNQPECHYSYR-LPT 489
            +N   + P    +Q HP       A    S+ GN  S    R      L+ SCDFC KR++RCDG    RCSFC+ K +PECHYS R LP+
Sbjct:   55 DNTPMNKPETRHRQHHP---MNKPAERGPSSTGNVPSKERRRHPQTIVLKKSCDFCFKRRKRCDGRAQRRCSFCIEKGRPECHYSMRSLPS 142
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1034.361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCM2_9PHAE4.070e-1264.44Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5K678_9PHAE1.550e-941.76Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1034contigD-dudresnayi_contig1034:3884..8007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size591
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1034.361.1prot_D-dudresnayi_contig1034.361.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1034 4115..8007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927532.0702262-UTR-D-dudresnayi_contig1034:3883..41141622927532.0702262-UTR-D-dudresnayi_contig1034:3883..4114Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1034 3884..4114 +
1690556795.7316399-UTR-D-dudresnayi_contig1034:3883..41141690556795.7316399-UTR-D-dudresnayi_contig1034:3883..4114Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1034 3884..4114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927532.0814655-CDS-D-dudresnayi_contig1034:4114..43171622927532.0814655-CDS-D-dudresnayi_contig1034:4114..4317Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1034 4115..4317 +
1690556795.7390633-CDS-D-dudresnayi_contig1034:4114..43171690556795.7390633-CDS-D-dudresnayi_contig1034:4114..4317Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1034 4115..4317 +
1622927532.0935485-CDS-D-dudresnayi_contig1034:7850..80071622927532.0935485-CDS-D-dudresnayi_contig1034:7850..8007Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1034 7851..8007 +
1690556795.7522588-CDS-D-dudresnayi_contig1034:7850..80071690556795.7522588-CDS-D-dudresnayi_contig1034:7850..8007Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1034 7851..8007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1034.361.1

>prot_D-dudresnayi_contig1034.361.1 ID=prot_D-dudresnayi_contig1034.361.1|Name=mRNA_D-dudresnayi_contig1034.361.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=120bp
MENGSTSGPLGVQKQQHPRIDFIPTAAVSVSAGGNASSAPPGRRLRGSCD
FCTKRKRRCDGDGVNRCSFCVAKNQPECHYSYRLPTGPRRDGSCSANRSP
AGSGTAATPAGSKRSGVTAA
back to top

mRNA from alignment at D-dudresnayi_contig1034:3884..8007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1034.361.1 ID=mRNA_D-dudresnayi_contig1034.361.1|Name=mRNA_D-dudresnayi_contig1034.361.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4124bp|location=Sequence derived from alignment at D-dudresnayi_contig1034:3884..8007+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTTTGCTTCTTGTGACATACTACTCTGTTGTTGCTGTTATACTACTGACA
ATTGTTCCACCCAAGCTTTCCCACAACAAGCATGATTCACGAGTATAGGA
TTACATTGCGGAGGTAACCATAACCAGCGGCCGTGAAAAGAAGAGACCAC
CCTCAGCAGGCAGTGTTGGGAAGTACTACTGTGTTACTTGTTGTACTACA
ACAGTTGTAGTGTACTGCTTTTGCTGTCAGCATGGAGAACGGTTCCACGA
GCGGGCCTTTAGGCGTACAGAAACAACAACACCCTCGCATCGACTTCATA
CCCACAGCTGCCGTCAGTGTTAGTGCTGGTGGCAATGCAAGCAGCGCGCC
GCCGGGGCGTAGGCTAAGGGGGAGCTGCGACTTCTGCACGAAGCGAAAAC
GCCGCTGTGACGGGGATGGCGTGAACCGCTGCAGGCGAGTAAGCATGTAA
TGTTTTGGTGTTTGAGACATCAGGGACACACGTGCTTGTACCCATGGCGA
GACCCACAGAGGAAGGGGGGCTACAGCTCTAGCCCTAGCTGTACCTGTAG
CTGACGATCGGATTTATCCCATTATCGGCCTTTTCTTCTGGTCCTTTTTG
GTTTCATAGTTGTTGTTGACGTAGTTATTTTGTTGATGAGTTCCTTTCGA
GTCTGTGAATTATTTTCTTTTCTTGCGAAAGGACCTGCCCTCCTTCGGCA
CTTCTCTTTCTCATACTCGTACTTCGTATTAATACATTTTCAAAATGACA
TGTACCATACAAGTACTCGTACTATATGCTTGCGCTTCGCACAGCAAGAC
ATACGTTCGCACAAGAGAGACAGAGAGAGACGCGACATCATTTCATTGTT
GTTGTTTATCAGCCAGGCGGAACATTCCTCAGTGTTGCAACGTGAGATAC
CTTGTGCTGCACGAACAAGAAGAGCGAACAGGCGGTTCAAGTTCTTCTTC
TTGTTTTTCGGGGGGGTTTTTTGCGGTCGATCCCAGTCCTGCTTTCATGC
ACGGGAGGAGCTTATCTACCCATCGCTCAGCGCACCTGCTTGCCTGCCTG
AGCAATAAGCCGTGGTCACAACTGTACAGTAGTAGTTGACTTCCTTTTCT
TCTCCCTCACGGTGCATACCTTGGTGTTTGTCGCGCGCAGGGTTAGCTAG
TCGACTTTCATCGGTCTAATTATCAGGGATAATTATGATATGATAAACTT
ACAGTACTACAACAGCAGTATGTAGTATGATACTCGTATTGTTACGAGTA
ACTAACGAAACAACAGCCGAGACTTGCCTAACTGTTGTTGTTGTAGCAGG
ATGTCGGGGAAAAATTCTTAATTGTCCGCATGATGTTTACGAGCGAAGCG
AGATTCCGATGACGCCAATAATATATAGGAGGTGCCCTAATATCAGCTCT
CGTGTCCGAATCTCCGTGTCCCACCCGACCACCGGAATCTCTCAAAGAGA
ACCATCTGAGGAACGGTGGCACCTTTTTGGTTCTCACCAACGCATACAAC
AACACAATTGACGGTACTACGAGTACTACTACTACTGTCTGTTGTGGTTC
TGTATGATATGATTGTCATAAATATCAGTAGGCTTAGCAATAACAATGGT
TGATGTTTTTGGACGGAACTTTACAGGAACTTTACCGAGTTTTTTACTTG
CTATTAGTACAGCTGTCTTCGTTGGGGTTCGGGTTAGGGTTAGTGGTAGA
ATTTTCCGAAACTGCTGAACAGCCCGCGTTGGTACTACCGTAGACGACAC
ATGATAACACACCCCCGGTGATACATTTTGGGCTTTAAAAATATTATCAC
CGGGTGTGGTATCCTGTGGGGGGTGTGGTATCTTATGTAGCCCGGGTGAT
AAAGTGCAGCTCGCAGGGGCCCCGAAGGGGGTGTGATAGCACGTCCGTAT
ACCCACAGGGTGTGTTTGGGGGTGTGGTGATGAGGGGGTGTGATAGCACG
TCCGCACACCCACATGGTGTGTTTGGGGGTGTGATACTCGTCTGCGGTAC
TCGTACGTGCTGCTGAGAGCGAGTCAGCAACTGGCTGCTGGTGAGGCGAT
GCGGTGGCTGTCATGTTGGCGCCTGTTGCTGTGCCAGCTGCTGCTGCTGT
TAGATCAACAGCAGCAGGAGGAGGAGCCGTAGCAGGAGCCGCTTGTCTAG
AAGAAGTGTGCTCGGGTTGAAAGAACGAGGTGATCTGTCGTGCCTGTACT
GCTGCGGTCGAAGCAGTTGGCGAAGCGGGGGTACTATTCTGTTCTCCCTC
CACGTTCATGTTGTTGGAGATCTCCAGACGGGGTGATTGCCCGCACACAG
AGGGTGTGTGTTGTGTGTGATGCCCACGGGGCAGATGTTGTCACCCGGGT
GATAAAAGGAGGGGGCCCGTGAATATATGCGGCGTAACCTTAATTGGTGT
GGTATCTTGTGTAGCCTGGGTGATAATTCGCTGGTTCGTTTGAAACGCCC
AAAATTGACACCGGGGTGTCGTATTCTGTGGGGGGTGTGGTTTCTTGTGT
GGGTGTGTTATCATGTGTCGTCTACAGTAATCATACATCATGTACCTAAT
AAAAACGAACGTCCCAAAGATCCGGTCTAAAAAAACGCTCCGAGTAAGGC
GACTCAATTAAGAGTACTGAAATTGCTCACCAAAAGACTAACTCGTGGCC
GGCGGTGTAGTTTCGACGAGGTACCCACTGACATCTCACATCCCTCGCAG
ATTGTGCGTTCTAATGTTCTACGACTACTACCATTGTTGCACGAGTATTA
TACTATCATACTACTCGTAACGTCTGCTGTTGTATTTTACTGCTTGTATC
TTGCGGTATCATATGATACGAAGATATCAACACAAAAACAAGAAAAGCTA
GGTTGATTTGTCCTCCCCATCACAATTCGATGAAAGTCGACGAGGGAAGA
AAGTGCTGCACTCTTCTCGCGACAAAAAATGTAGGCACGTACCGTAGTGG
GAAGGCGGGAGGAGTGCCTGCTATGTGACCCCGGATCTGAGTTAGTTACG
AAGAGAGATGGAGCTAGAGAAAGAATAGGGCGAAGATAATAAATGGGACG
GGAAAAAAAAAAATCTCTTGATAAAAAACATGTTGGCTCCTTCCAAAAAC
GAGGGTTAGAACATGCACACACCGAATTTAATGATATAACGACCAGTTTT
ATGCCCCCGTTACCGATGTTATCGTTACTGTTGTATGAAATATCCTCACA
TGCTTACAATTATCCTGCGGAGACTCTGGGCTTTCCCAAGGGAGGGCTAC
TCGTGTGATAGCTACTTGTACGGCCCCTATACCTTATCTGACGACCGGTA
GAACATGCACGGCCGAACTATCACAGAGGGGAAACTGGCTATGATCCCCT
GGATCCTGAACCACCACGGCTCGTGTATCTTTTGTTTTTTTTTATTTCTC
GGCCGACCTCACGGACTCACGCTGCATAGAGCACCAAATCGCACTTTAAA
AAAAACTACACAAAAAAACAGGAACATGGTACGAAAAACCAGGCCACTTA
CAAAAATGACGATGTAGTTGGGTGAGTATGGACGGTGGAGAATGATTGCT
ACAGGCACAACTCCAACCAACCAGCTACGGCGGTCTCAATTGTGCAAGCC
GGGACTCGAACGCACGACTCTATCCTTCCTAGGTGATAGGTCTAATCCCG
TTATTATTCACCAAACTATCATAATCCGCGCTGACTACGCTCGTTTCTCC
TCTTTCGCCGCCCTCAAAACTCGTCCGCGTGTTTGATAACTGTTAAGACA
ACTGTTTGTGAGAGATCGGATTACGAAAGGATAGAAGGGACCTTTGGGAT
ACCGTTTATTGTACTGCATATTGCGAACGTGGGGTACGCAGGCTGGTCGG
AATTTTGCTACAACTAACTCTAACCCAAACCGCACTCTATAATATATATA
TATTGAGTGAAAGCCCCCCGAAAGATCCTTTCTAACGCTTTGTAATCTCT
ACCCGTCCCAATAACAGTTTCTGCGTGGCCAAGAATCAGCCGGAGTGCCA
CTACAGCTACAGGCTTCCCACCGGTCCGCGGCGGGATGGCTCATGCTCTG
CCAACAGAAGCCCAGCCGGCAGCGGTACTGCTGCTACCCCTGCCGGGTCC
AAGCGCTCTGGCGTAACCGCGGCG
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig1034:3884..8007+

>mRNA_D-dudresnayi_contig1034.361.1 ID=mRNA_D-dudresnayi_contig1034.361.1|Name=mRNA_D-dudresnayi_contig1034.361.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at D-dudresnayi_contig1034:3884..8007+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGAGAACGGTTCCACGAGCGGGCCTTTAGGCGTACAGAAACAACAACA
CCCTCGCATCGACTTCATACCCACAGCTGCCGTCAGTGTTAGTGCTGGTG
GCAATGCAAGCAGCGCGCCGCCGGGGCGTAGGCTAAGGGGGAGCTGCGAC
TTCTGCACGAAGCGAAAACGCCGCTGTGACGGGGATGGCGTGAACCGCTG
CAGATGGAGAACGGTTCCACGAGCGGGCCTTTAGGCGTACAGAAACAACA
ACACCCTCGCATCGACTTCATACCCACAGCTGCCGTCAGTGTTAGTGCTG
GTGGCAATGCAAGCAGCGCGCCGCCGGGGCGTAGGCTAAGGGGGAGCTGC
GACTTCTGCACGAAGCGAAAACGCCGCTGTGACGGGGATGGCGTGAACCG
CTGCAGTTTCTGCGTGGCCAAGAATCAGCCGGAGTGCCACTACAGCTACA
GGCTTCCCACCGGTCCGCGGCGGGATGGCTCATGCTCTGCCAACAGAAGC
CCAGCCGGCAGCGGTACTGCTGCTACCCCTGCCGGGTCCAAGCGCTCTGG
CGTAACCGCGGCGTTTCTGCGTGGCCAAGAATCAGCCGGAGTGCCACTAC
AGCTACAGGCTTCCCACCGGTCCGCGGCGGGATGGCTCATGCTCTGCCAA
CAGAAGCCCAGCCGGCAGCGGTACTGCTGCTACCCCTGCCGGGTCCAAGC
GCTCTGGCGTAACCGCGGCG
back to top