mRNA_D-dudresnayi_contig10325.349.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10325.349.1
Unique NamemRNA_D-dudresnayi_contig10325.349.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10325.349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10325contigD-dudresnayi_contig10325:4485..5634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1151
Cds size939
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927530.766595-CDS-D-dudresnayi_contig10325:4484..54231622927530.766595-CDS-D-dudresnayi_contig10325:4484..5423Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10325 4485..5423 +
1690556795.097597-CDS-D-dudresnayi_contig10325:4484..54231690556795.097597-CDS-D-dudresnayi_contig10325:4484..5423Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10325 4485..5423 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927530.7786276-UTR-D-dudresnayi_contig10325:5423..56341622927530.7786276-UTR-D-dudresnayi_contig10325:5423..5634Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10325 5424..5634 +
1690556795.1050472-UTR-D-dudresnayi_contig10325:5423..56341690556795.1050472-UTR-D-dudresnayi_contig10325:5423..5634Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10325 5424..5634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10325.349.1prot_D-dudresnayi_contig10325.349.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10325 4485..5423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10325.349.1

>prot_D-dudresnayi_contig10325.349.1 ID=prot_D-dudresnayi_contig10325.349.1|Name=mRNA_D-dudresnayi_contig10325.349.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=313bp
PSTSTSHGASGGGVDASLSAIAIADTVSTPLTADAGISRQTRAIATKKTA
SGELSVNSILAKRKRKSAKSSDNVDGAATSTHSPPTQTGEDSMNGGSEGL
KWIGGSPTGGGARRNPKEYGRGVSGARDHRRESRHRSRSGDGSSGRHRLK
CERDPTCSRSRDSSFSSLDTDPGRRAMHFRGRERFPTTTRTESNATRHRL
VAVKGLRSTVKMDVHASAGRCALADVGDLRPAAELKTTPAVRLAPGVGTG
LHTVNAVRDDLALGADLLEVTATKSTTNTRRRVRKSPAIVPGVRSTETGA
NLAITGIAVVGL*
back to top

mRNA from alignment at D-dudresnayi_contig10325:4485..5634+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10325.349.1 ID=mRNA_D-dudresnayi_contig10325.349.1|Name=mRNA_D-dudresnayi_contig10325.349.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1150bp|location=Sequence derived from alignment at D-dudresnayi_contig10325:4485..5634+ (Desmarestia dudresnayi DdudBR16 monoicous)
CCGTCTACCTCTACCTCTCATGGCGCTAGTGGCGGTGGTGTTGATGCCTC
CTTATCGGCGATAGCCATAGCCGACACCGTTTCCACACCTTTAACCGCTG
ATGCTGGCATATCGCGTCAAACGAGAGCCATAGCCACGAAGAAGACAGCG
TCGGGCGAGTTGTCGGTGAACTCTATACTGGCGAAACGGAAGCGAAAGTC
TGCCAAGTCTAGCGATAACGTCGATGGTGCTGCTACTTCTACCCACAGTC
CGCCGACTCAAACCGGCGAGGACTCTATGAACGGAGGTAGCGAAGGGTTA
AAGTGGATTGGGGGTTCGCCCACCGGAGGTGGTGCCCGCCGCAACCCTAA
GGAGTATGGCCGTGGAGTTAGCGGTGCCCGCGACCACCGACGCGAAAGCC
GACACCGATCACGAAGTGGAGACGGGTCTTCTGGACGCCATAGGCTTAAA
TGCGAACGCGATCCGACGTGTTCCCGGAGCCGGGACAGCTCGTTCTCCAG
CCTAGATACAGATCCTGGACGCCGTGCGATGCACTTCCGCGGTCGCGAGA
GATTTCCCACCACGACGAGAACAGAATCGAACGCCACACGACACCGTCTC
GTAGCCGTGAAAGGTCTTCGTTCAACCGTGAAAATGGACGTACATGCGAG
CGCGGGACGATGCGCTCTGGCAGACGTGGGAGACCTTCGCCCGGCCGCAG
AATTGAAAACGACCCCCGCCGTGAGACTCGCTCCAGGAGTCGGGACAGGT
CTTCATACCGTGAATGCCGTGCGAGACGATCTCGCGTTGGGAGCAGATCT
CCTAGAAGTCACCGCAACGAAATCGACCACGAACACGCGGCGACGCGTAA
GGAAAAGTCCCGCAATAGTGCCAGGAGTACGAAGCACAGAGACCGGAGCG
AATCTCGCGATAACAGGGATCGCGGTAGTAGGGTTGTGAGTCGCTCACCA
AGGCGTACTGGCGGTGGCAGCGGAACCGAATATGGACTCAAGAGGGGGAA
TAGCAAACGTCGTAGAAGTCAGGATGGGAGTCGAACAGTAGAAGAAGAGC
GCCGTGTCCGCCAGCGCCTCGACAGACCGGAAGGACTCGCACAACAGCGG
GCATCGCGCCAGACGTCGGAGCACAGACGTCCGAAAGTGCGAGAACAACG
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10325:4485..5634+

>mRNA_D-dudresnayi_contig10325.349.1 ID=mRNA_D-dudresnayi_contig10325.349.1|Name=mRNA_D-dudresnayi_contig10325.349.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at D-dudresnayi_contig10325:4485..5634+ (Desmarestia dudresnayi DdudBR16 monoicous)
CCGTCTACCTCTACCTCTCATGGCGCTAGTGGCGGTGGTGTTGATGCCTC
CTTATCGGCGATAGCCATAGCCGACACCGTTTCCACACCTTTAACCGCTG
ATGCTGGCATATCGCGTCAAACGAGAGCCATAGCCACGAAGAAGACAGCG
TCGGGCGAGTTGTCGGTGAACTCTATACTGGCGAAACGGAAGCGAAAGTC
TGCCAAGTCTAGCGATAACGTCGATGGTGCTGCTACTTCTACCCACAGTC
CGCCGACTCAAACCGGCGAGGACTCTATGAACGGAGGTAGCGAAGGGTTA
AAGTGGATTGGGGGTTCGCCCACCGGAGGTGGTGCCCGCCGCAACCCTAA
GGAGTATGGCCGTGGAGTTAGCGGTGCCCGCGACCACCGACGCGAAAGCC
GACACCGATCACGAAGTGGAGACGGGTCTTCTGGACGCCATAGGCTTAAA
TGCGAACGCGATCCGACGTGTTCCCGGAGCCGGGACAGCTCGTTCTCCAG
CCTAGATACAGATCCTGGACGCCGTGCGATGCACTTCCGCGGTCGCGAGA
GATTTCCCACCACGACGAGAACAGAATCGAACGCCACACGACACCGTCTC
GTAGCCGTGAAAGGTCTTCGTTCAACCGTGAAAATGGACGTACATGCGAG
CGCGGGACGATGCGCTCTGGCAGACGTGGGAGACCTTCGCCCGGCCGCAG
AATTGAAAACGACCCCCGCCGTGAGACTCGCTCCAGGAGTCGGGACAGGT
CTTCATACCGTGAATGCCGTGCGAGACGATCTCGCGTTGGGAGCAGATCT
CCTAGAAGTCACCGCAACGAAATCGACCACGAACACGCGGCGACGCGTAA
GGAAAAGTCCCGCAATAGTGCCAGGAGTACGAAGCACAGAGACCGGAGCG
AATCTCGCGATAACAGGGATCGCGGTAGTAGGGTTGTGACCGTCTACCTC
TACCTCTCATGGCGCTAGTGGCGGTGGTGTTGATGCCTCCTTATCGGCGA
TAGCCATAGCCGACACCGTTTCCACACCTTTAACCGCTGATGCTGGCATA
TCGCGTCAAACGAGAGCCATAGCCACGAAGAAGACAGCGTCGGGCGAGTT
GTCGGTGAACTCTATACTGGCGAAACGGAAGCGAAAGTCTGCCAAGTCTA
GCGATAACGTCGATGGTGCTGCTACTTCTACCCACAGTCCGCCGACTCAA
ACCGGCGAGGACTCTATGAACGGAGGTAGCGAAGGGTTAAAGTGGATTGG
GGGTTCGCCCACCGGAGGTGGTGCCCGCCGCAACCCTAAGGAGTATGGCC
GTGGAGTTAGCGGTGCCCGCGACCACCGACGCGAAAGCCGACACCGATCA
CGAAGTGGAGACGGGTCTTCTGGACGCCATAGGCTTAAATGCGAACGCGA
TCCGACGTGTTCCCGGAGCCGGGACAGCTCGTTCTCCAGCCTAGATACAG
ATCCTGGACGCCGTGCGATGCACTTCCGCGGTCGCGAGAGATTTCCCACC
ACGACGAGAACAGAATCGAACGCCACACGACACCGTCTCGTAGCCGTGAA
AGGTCTTCGTTCAACCGTGAAAATGGACGTACATGCGAGCGCGGGACGAT
GCGCTCTGGCAGACGTGGGAGACCTTCGCCCGGCCGCAGAATTGAAAACG
ACCCCCGCCGTGAGACTCGCTCCAGGAGTCGGGACAGGTCTTCATACCGT
GAATGCCGTGCGAGACGATCTCGCGTTGGGAGCAGATCTCCTAGAAGTCA
CCGCAACGAAATCGACCACGAACACGCGGCGACGCGTAAGGAAAAGTCCC
GCAATAGTGCCAGGAGTACGAAGCACAGAGACCGGAGCGAATCTCGCGAT
AACAGGGATCGCGGTAGTAGGGTTGTGA
back to top