mRNA_D-dudresnayi_contig10309.338.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10309.338.1
Unique NamemRNA_D-dudresnayi_contig10309.338.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10309.338.1 vs. uniprot
Match: A0A6H5JEP9_9PHAE (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEP9_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 5.900e-38
Identity = 62/82 (75.61%), Postives = 75/82 (91.46%), Query Frame = 1 
Query:   61 VVKADVWEGFGEEDHMRFLDEYWQKKPLLIRQAVRGLDNLLSKDELAGLACCPDVESRVITGGKMVEEAGKDWEVEHGPFEE 306
            VVKA+VW+GF EEDH RFL E+WQKKPLLIRQA++G + +L+KDELAGL+CCPDVE+RV+TGG+ V+ AGKDWEVEHGPFEE
Sbjct:   59 VVKAEVWQGFSEEDHDRFLAEFWQKKPLLIRQAIKGFETILTKDELAGLSCCPDVEARVVTGGRYVDNAGKDWEVEHGPFEE 140
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BLAST of mRNA_D-dudresnayi_contig10309.338.1 vs. uniprot
Match: A0A836CR86_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR86_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.870e-21
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:   67 KADVWEGFGEEDHMRFLDEYWQKKPLLIRQAVRGLDNLLSKDELAGLACCPDVESRVITGGKMVEEAGKDWEVEHGPFEE 306
            +ADVW+GF    H  FL E+WQKKPLLIRQA     + +S DELAGL+C  DVESR++TGGK       DW V HGPF+E
Sbjct:   66 EADVWQGFEASRHEEFLAEFWQKKPLLIRQAFSEFQSPISPDELAGLSCADDVESRIVTGGKTP--GNSDWAVRHGPFDE 143
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BLAST of mRNA_D-dudresnayi_contig10309.338.1 vs. uniprot
Match: UPI00046FA3D6 (cupin domain-containing protein n=1 Tax=Carnimonas nigrificans TaxID=64323 RepID=UPI00046FA3D6)

HSP 1 Score: 79.0 bits (193), Expect = 4.430e-15
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:   91 GEEDHMRFLDEYWQKKPLLIRQAVRGLDNLLSKDELAGLACCPDVESRVITGGKMVEEAGKDWEVEHGPFEEQ 309
            GE    RFL EYWQKKPLLIRQA+ G ++ LS +ELAGLAC  +VESR++   + V   GK W+V HGP +E+
Sbjct:    6 GELTPERFLAEYWQKKPLLIRQAIPGFESPLSAEELAGLACEEEVESRLV---ESVGADGKPWQVTHGPMDEE 75
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BLAST of mRNA_D-dudresnayi_contig10309.338.1 vs. uniprot
Match: A0A7C1TQ53_9GAMM (Cupin domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1TQ53_9GAMM)

HSP 1 Score: 78.6 bits (192), Expect = 6.480e-15
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:  109 RFLDEYWQKKPLLIRQAVRGLDNLLSKDELAGLACCPDVESRVITGGKMVEEAG-KDWEVEHGPFEEQ 309
            RFL EYWQKKPLL+RQA+ G    LS DELAGLAC P+VESR+I     +E+ G + W++EHGPF E+
Sbjct:   36 RFLAEYWQKKPLLVRQAIPGFRLPLSADELAGLACEPEVESRLI-----LEKGGERPWQLEHGPFAEE 98
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BLAST of mRNA_D-dudresnayi_contig10309.338.1 vs. uniprot
Match: UPI001CFF8925 (cupin domain-containing protein n=1 Tax=Methylobacillus caricis TaxID=1971611 RepID=UPI001CFF8925)

HSP 1 Score: 78.2 bits (191), Expect = 8.330e-15
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:  109 RFLDEYWQKKPLLIRQAVRGLDNLLSKDELAGLACCPDVESRVITGGKMVEEAGKDWEVEHGPFEE 306
            +FL EYWQKKPLLIRQA+ G   LLS DELAGLAC  DV+SR+I+  K        W+VE+GPF+E
Sbjct:   25 QFLAEYWQKKPLLIRQAIPGFSGLLSPDELAGLACESDVQSRLISHKKS------GWKVENGPFDE 84
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BLAST of mRNA_D-dudresnayi_contig10309.338.1 vs. uniprot
Match: A0A2R5F7D4_9PROT (50S ribosomal protein L16 3-hydroxylase n=1 Tax=Novimethylophilus kurashikiensis TaxID=1825523 RepID=A0A2R5F7D4_9PROT)

HSP 1 Score: 77.8 bits (190), Expect = 1.070e-14
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:  109 RFLDEYWQKKPLLIRQAVRGLDNLLSKDELAGLACCPDVESRVITGGKMVEEAGKDWEVEHGPFEE 306
            +FL+EYWQKKPLLIRQA  G  +++S DELAGLAC  D +SR++     +E +GK W+VE+GPFEE
Sbjct:   16 QFLEEYWQKKPLLIRQAFPGFGDVMSPDELAGLACEEDAQSRLV-----LENSGK-WQVENGPFEE 75
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BLAST of mRNA_D-dudresnayi_contig10309.338.1 vs. uniprot
Match: A0A0F9NLC3_9ZZZZ (JmjC domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A0F9NLC3_9ZZZZ)

HSP 1 Score: 77.4 bits (189), Expect = 1.610e-14
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:  103 HMRFLDEYWQKKPLLIRQAVRGLDNLLSKDELAGLACCPDVESRVITGGKMVEEAGKDWEVEHGPFEE 306
            + +FLDEYWQKKPLLIRQA  GLD ++S +ELAGLAC  D+ESR+I       ++G  W  +HGPF E
Sbjct:   11 YQQFLDEYWQKKPLLIRQAFPGLDPIISPEELAGLACHEDIESRLIEEDS---DSGP-WRCQHGPFTE 74
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BLAST of mRNA_D-dudresnayi_contig10309.338.1 vs. uniprot
Match: UPI001CFF7D1B (cupin domain-containing protein n=1 Tax=Methylobacillus gramineus TaxID=755169 RepID=UPI001CFF7D1B)

HSP 1 Score: 77.0 bits (188), Expect = 2.170e-14
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:  112 FLDEYWQKKPLLIRQAVRGLDNLLSKDELAGLACCPDVESRVITGGKMVEEAGKDWEVEHGPFEE 306
            FL EYWQKKPLLIRQA+ G + LLS DELAGLAC  DV+SR+I+  K        W+VE GPF+E
Sbjct:   26 FLAEYWQKKPLLIRQAIPGFNGLLSPDELAGLACEGDVQSRLISHKKS------GWKVEDGPFDE 84
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BLAST of mRNA_D-dudresnayi_contig10309.338.1 vs. uniprot
Match: UPI0016586356 (cupin domain-containing protein n=1 Tax=Thauera sp. CAU 1555 TaxID=2767595 RepID=UPI0016586356)

HSP 1 Score: 76.6 bits (187), Expect = 2.800e-14
Identity = 38/63 (60.32%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:  109 RFLDEYWQKKPLLIRQAVRGLDNLLSKDELAGLACCPDVESRVITGGKMVEEAGKDWEVEHGP 297
            +FL+EYWQKKPLL+RQAV G   +L +DEL  LAC PDVESR       V   G  WEVEHGP
Sbjct:   13 QFLEEYWQKKPLLVRQAVAGFTGVLERDELFDLACDPDVESR------WVRHDGDTWEVEHGP 69
[Close]
BLAST of mRNA_D-dudresnayi_contig10309.338.1 vs. uniprot
Match: A0A356R5Z0_9BACT (Cupin (Fragment) n=1 Tax=Nitrospiraceae bacterium TaxID=2026770 RepID=A0A356R5Z0_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 2.800e-14
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:  112 FLDEYWQKKPLLIRQAVRGLDNLLSKDELAGLACCPDVESRVITGGKMVEEAGKDWEVEHGPF 300
            FL EYWQKKPLLIRQA+ G+   ++ DELAGLAC  +VESR+I    + + A   WE+ HGPF
Sbjct:   14 FLGEYWQKKPLLIRQALPGIKPPIAADELAGLACEEEVESRLI----IQDPASDQWELSHGPF 72
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10309.338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEP9_9PHAE5.900e-3875.61Bifunctional lysine-specific demethylase and histi... [more]
A0A836CR86_9STRA3.870e-2157.50Bifunctional lysine-specific demethylase and histi... [more]
UPI00046FA3D64.430e-1556.16cupin domain-containing protein n=1 Tax=Carnimonas... [more]
A0A7C1TQ53_9GAMM6.480e-1560.29Cupin domain-containing protein n=1 Tax=Gammaprote... [more]
UPI001CFF89258.330e-1560.61cupin domain-containing protein n=1 Tax=Methylobac... [more]
A0A2R5F7D4_9PROT1.070e-1459.0950S ribosomal protein L16 3-hydroxylase n=1 Tax=No... [more]
A0A0F9NLC3_9ZZZZ1.610e-1457.35JmjC domain-containing protein n=2 Tax=root TaxID=... [more]
UPI001CFF7D1B2.170e-1461.54cupin domain-containing protein n=1 Tax=Methylobac... [more]
UPI00165863562.800e-1460.32cupin domain-containing protein n=1 Tax=Thauera sp... [more]
A0A356R5Z0_9BACT2.800e-1457.14Cupin (Fragment) n=1 Tax=Nitrospiraceae bacterium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10309contigD-dudresnayi_contig10309:7057..10136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog2880.D7FJ65
EggNOG free text desc.Cupin superfamily protein
EggNOG OGs2S0FU@2759,COG2850@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size311
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.9052782-CDS-D-dudresnayi_contig10309:7056..72231622927529.9052782-CDS-D-dudresnayi_contig10309:7056..7223Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10309 7057..7223 +
1690556794.663425-CDS-D-dudresnayi_contig10309:7056..72231690556794.663425-CDS-D-dudresnayi_contig10309:7056..7223Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10309 7057..7223 +
1622927529.9219124-CDS-D-dudresnayi_contig10309:9994..101361622927529.9219124-CDS-D-dudresnayi_contig10309:9994..10136Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10309 9995..10136 +
1690556794.6780093-CDS-D-dudresnayi_contig10309:9994..101361690556794.6780093-CDS-D-dudresnayi_contig10309:9994..10136Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10309 9995..10136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10309.338.1prot_D-dudresnayi_contig10309.338.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10309 7057..10136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10309.338.1

>prot_D-dudresnayi_contig10309.338.1 ID=prot_D-dudresnayi_contig10309.338.1|Name=mRNA_D-dudresnayi_contig10309.338.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=103bp
RGEGQHCATSTVVDGNEETVVVKADVWEGFGEEDHMRFLDEYWQKKPLLI
RQAVRGLDNLLSKDELAGLACCPDVESRVITGGKMVEEAGKDWEVEHGPF
EEQ
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mRNA from alignment at D-dudresnayi_contig10309:7057..10136+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10309.338.1 ID=mRNA_D-dudresnayi_contig10309.338.1|Name=mRNA_D-dudresnayi_contig10309.338.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3080bp|location=Sequence derived from alignment at D-dudresnayi_contig10309:7057..10136+ (Desmarestia dudresnayi DdudBR16 monoicous)
CGTGGCGAAGGGCAGCACTGTGCCACTAGCACTGTTGTCGACGGTAACGA
AGAGACGGTTGTGGTGAAAGCGGACGTATGGGAAGGCTTTGGCGAGGAGG
ACCACATGAGGTTTCTGGATGAATATTGGCAGAAGAAGCCCCTGCTTATT
CGACAAGCGGTGCGAGGGTGAGATTGTTGCCAACTTGATACATCATGGCA
TGTGTCATGTTCTGTTGTAGTAGAAGCAGCAGTATGTACAGTAGATACGT
AGAGTCATAGATACCACTACTGTACTTGTATGTCTTATGATACGAGTGCT
GTTGTGGTAGATCTACCTACAGTTGTAGAGAGCTCTGGGCATATGATACG
TGCAGTAATAAGTTTTATGACCACGGGCGAGATCTTTTGAGATGAGCTGA
GATTTCGAAAACAAAATGCCCATCGAAATCTCCCGGCCGATAAATTTGTA
CCATACAACAGTAGAGACAGTAGTATGGTATGATAGTACAAACAAGTACC
AGGTAGTACTATTAATAGTAACTACGGTAATAGTAACGCGGAATTACAAC
GAACAGCGCACCAGGCACTGAAACGATTGTACGTCGGCCGCGGCACTCAT
GACCACCGTGACAGCTGCGCCCTGACCTATCTGTAGATAGATCATGAGGC
AGGGCCTGGCCGAGGTGTTCGACCAAAATCGCACGGTACGAGAGCTTTCA
GCGGAAAGAACGGCATTGCGGTGTGCGTCGTTTTGGGTTACCGCAGTCGT
GGGCCAATGCCTCACCGGGTCGATCAACCAGGTAGAAAGCTCGCAAGGGG
CACGAAAGTGCCCCGTGAAATCTTTGGCATCCTTGCAGTGGGGTCAAGCA
TTCGATTTTTCTAGCACCATGCACTCCCCATGCGAGGGCTGTCTCAATCG
GGTCTTGGCGTGGACACGCGGGTCGTTTTGCTGCTTGATTTGAGTTCGTC
TGTTGTCAATAAACTCGATGACAAGTCTATGGCAAGTGCAGATGGTGATG
ACTCAAGTCAAGCGAAGTTGCCTGCCCGTGCTACCCAAGACTCGACCCAG
TTACCCACACGCGGGGAGTGGTGCTAGAAAAATTGAATGCTTGATCCCGA
CTGCAACGAAGGCAAAGAGCTACTCGTACGGGGACGATTTTTTTTTCTCC
CTTGCGATTTTTGTGTCTCGTTGATCGACATAGCGAGGTGGTGCCTGGGA
CGTCGCACACTGCAATGCCACATCCGCTTCCCGCTGAAGGCACGTGTAGT
AGCGTGCATGTTGTGAGCTCGTTGAGCTCTCTACATCAGTAGTAGTATGG
ATGTATTAGTTGCAGCAGCAGCGGCAGTGTGTAGCGTGTCGGACGACCTC
CTGTTGCGCGCGTGCACAGCAGAGGAGATGCTTCCTGTTTCTATTTTTCT
ATACAACAGTAGTATAACAGCACCTCATCATTATGATGACAGGCTCCACA
CTAATTTTAGTACATACAGCAGCACTATTTTCTCCCAGATCCATTCTATC
TGAATCGAAGATTTTGCCCATAGCGTTGTGTCGAACATTTTGACATTTAA
ATCTTAATCTTCTGTTGTGAAATATATATTGGAGAAGATTGAGATCAAGA
TTCTCTTTCCATAAGCAGTTGCCTAATGCGAGAAACAACAACAACAACAA
TGGTACTCGTAGTAGTAGCAGGTAGCATGGTAAGGTCGATCTCGGCCAGA
GTTGGGGTTGTACCGGAGACATGTACTGTCTGTCAGTAGGGAAAAAAACG
CACTGCATAATCTTGTCGGTGATTGCTCTAAACTAAGAACTCAAGCACCA
AACTCCCAGCAGTCGCTCTACCTTTTGAAGCAACCTTGCTATGGTACGTG
TCGAGCTGAGCTGCATGATGGACGAGCGCATCAATTGCATGTGGAGTCTA
CAGCATGTGCATCGTTCCTTGTAACCCATTAGACCTGCGAGCAGAGGGGG
CATCTGGTCATGACTGGCACCGCTGCGGCGACATGCTCCGCGTGAACGGG
TTGCCCTCGGGCGTGAAGATTGCTTCGCGCAGTGTTCTCGGTAGGCAAAC
CACAGGTGCACCGCCCAGATTATTGGTCATCACTACTAATATTGACAATA
GTGCGAGTGTTTACAGTATGAAGTCGATGAGCTATTAGAATGTCGATCCC
TGTGATCGAAAAAAACCCCCGACGCATGTACCGCGAGGGTGAAGGGAAAA
CGCCTATGACCACGGCTTGCTCAGACAGGCGCGCTGAGCGATGGGTAGAG
TGTAGAAGAGCTCCTGTCAGGTGGACTGGAAAGTTCAAGTGATGGATGAT
AATAGATACGTAGAGCCTATATACTCGTACTCGTACTTTTTTTGTTCAAT
CAGCAAGGACTCTAACTCTTGGTCCAGCTCACAAGGCCTTATCGCTTAGG
ACGCCTGTACGAGCAAGCCGTGGTCACAAGTGTCTAACCTCCTCCCCCAC
GATATATGCCAACCATTGTTGTTATCGCGTACAGTGTTCGGCACTCCCAT
AGCTTGTTGACATTCGTCCAATCATGTTTACTTACGTCCTCGCGCTCTCC
ACGACGAAAGACGGCACGCAAAAAAAAATACAATTTTGTTTTTGCAGGGA
TTGGAACCCACGAACTTCCGCCAACAGGGGTGACAATGGTCGACACATCC
TAACCATCAGACTGCAACGCTACCCCTCGTTGTAGACCATAGCGGCGTCC
GTCGTGTATGTACGCCGAATAATATGTACCCTCCGTATATACTGTTGTAC
TGGGCGATTAGAGTCTAGAGGTTAGACTGCAATAGCCTGGTGCTGTGCTG
CTTGCACACGCAGAGCTCTGTGCTGTCTATCTGTAGCGTGCCACATGGAT
CCTCGTGCTGATCGCGATCACCAGGGCTTGGATATCACTCGCCTCTTTCG
TTCTCTCTCGCGCCTGGGGGCGCTTTCTTGCTGTAAAGGTTGGACAACCT
CCTGTCCAAGGACGAGCTGGCGGGTTTGGCCTGCTGCCCGGACGTTGAGA
GCCGTGTCATCACGGGAGGTAAAATGGTTGAGGAAGCCGGGAAGGACTGG
GAGGTGGAGCACGGCCCCTTCGAGGAACAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10309:7057..10136+

>mRNA_D-dudresnayi_contig10309.338.1 ID=mRNA_D-dudresnayi_contig10309.338.1|Name=mRNA_D-dudresnayi_contig10309.338.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at D-dudresnayi_contig10309:7057..10136+ (Desmarestia dudresnayi DdudBR16 monoicous)
CGTGGCGAAGGGCAGCACTGTGCCACTAGCACTGTTGTCGACGGTAACGA
AGAGACGGTTGTGGTGAAAGCGGACGTATGGGAAGGCTTTGGCGAGGAGG
ACCACATGAGGTTTCTGGATGAATATTGGCAGAAGAAGCCCCTGCTTATT
CGACAAGCGGTGCGAGGCGTGGCGAAGGGCAGCACTGTGCCACTAGCACT
GTTGTCGACGGTAACGAAGAGACGGTTGTGGTGAAAGCGGACGTATGGGA
AGGCTTTGGCGAGGAGGACCACATGAGGTTTCTGGATGAATATTGGCAGA
AGAAGCCCCTGCTTATTCGACAAGCGGTGCGAGGGTTGGACAACCTCCTG
TCCAAGGACGAGCTGGCGGGTTTGGCCTGCTGCCCGGACGTTGAGAGCCG
TGTCATCACGGGAGGTAAAATGGTTGAGGAAGCCGGGAAGGACTGGGAGG
TGGAGCACGGCCCCTTCGAGGAACAAGTTGGACAACCTCCTGTCCAAGGA
CGAGCTGGCGGGTTTGGCCTGCTGCCCGGACGTTGAGAGCCGTGTCATCA
CGGGAGGTAAAATGGTTGAGGAAGCCGGGAAGGACTGGGAGGTGGAGCAC
GGCCCCTTCGAGGAACAA
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