mRNA_D-dudresnayi_contig10258.299.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10258.299.1
Unique NamemRNA_D-dudresnayi_contig10258.299.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10258.299.1 vs. uniprot
Match: A0A6H5KTI6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTI6_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 8.380e-16
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:  394 GARSLRCVCAVPPLGISPLGWDTGMGTVCLAASVVWVKLWTSLARHGKIKPQV 552
            GA +LRCVCA+PP GISPL WD G+ TV  AAS+VWVKLWT LAR  K+KPQV
Sbjct:  109 GAGTLRCVCALPPPGISPLVWDAGVSTVVGAASIVWVKLWTGLARRDKMKPQV 161
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10258.299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTI6_9PHAE8.380e-1671.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10258contigD-dudresnayi_contig10258:7129..10955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue4.8e-14
Seed eggNOG ortholog2880.D7G296
Preferred nameVTE5
KEGG rclassRC00002,RC00017
KEGG koko:K15892,ko:K18678
KEGG ReactionR09849,R10659
KEGG Pathwayko00900,ko01130,map00900,map01130
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006766,GO:0006775,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009507,GO:0009536,GO:0009987,GO:0010189,GO:0010276,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0042360,GO:0042362,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.dolichyl monophosphate biosynthetic process
EggNOG OGsCOG0170@1,KOG4453@2759
EC2.7.1.182,2.7.1.216
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Exons2
Model size554
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927526.3582895-CDS-D-dudresnayi_contig10258:7128..75381622927526.3582895-CDS-D-dudresnayi_contig10258:7128..7538Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10258 7129..7538 +
1690556792.6770425-CDS-D-dudresnayi_contig10258:7128..75381690556792.6770425-CDS-D-dudresnayi_contig10258:7128..7538Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10258 7129..7538 +
1622927526.3765924-CDS-D-dudresnayi_contig10258:10813..109551622927526.3765924-CDS-D-dudresnayi_contig10258:10813..10955Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10258 10814..10955 +
1690556792.689575-CDS-D-dudresnayi_contig10258:10813..109551690556792.689575-CDS-D-dudresnayi_contig10258:10813..10955Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10258 10814..10955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10258.299.1prot_D-dudresnayi_contig10258.299.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10258 7129..10955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10258.299.1

>prot_D-dudresnayi_contig10258.299.1 ID=prot_D-dudresnayi_contig10258.299.1|Name=mRNA_D-dudresnayi_contig10258.299.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=184bp
CVILKTGGKLHTCIANPTLMANRSFSLSSSAVAAVILLLILTSLPAAISH
TTRRTSTCNSNNNNNAIAMLANTGSTLSARTGAWRGIRVPRGGGGGGGER
RGTFNSERTDHAASGWAGVRTSGRSPVRGRGGARSLRCVCAVPPLGISPL
GWDTGMGTVCLAASVVWVKLWTSLARHGKIKPQV
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mRNA from alignment at D-dudresnayi_contig10258:7129..10955+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10258.299.1 ID=mRNA_D-dudresnayi_contig10258.299.1|Name=mRNA_D-dudresnayi_contig10258.299.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3827bp|location=Sequence derived from alignment at D-dudresnayi_contig10258:7129..10955+ (Desmarestia dudresnayi DdudBR16 monoicous)
TGCGTCATTCTCAAAACCGGAGGCAAACTACACACGTGCATCGCCAACCC
GACCCTGATGGCGAACAGGTCCTTCTCTCTGTCATCGTCTGCCGTAGCTG
CTGTGATACTTCTCCTGATCCTCACCTCGCTTCCAGCAGCCATCTCACAC
ACCACACGCCGAACATCAACATGCAACAGCAACAATAACAACAATGCGAT
TGCCATGCTAGCCAACACAGGCAGCACTCTCAGTGCAAGAACAGGAGCCT
GGCGCGGGATCAGAGTGCCGAGAGGAGGAGGAGGAGGAGGAGGAGAAAGA
CGAGGAACATTCAATTCGGAAAGGACGGATCATGCCGCTTCTGGCTGGGC
TGGGGTGCGGACTTCTGGAAGGAGCCCGGTTCGAGGCAGGGGTGGAGCCA
GGTCGCTTCGGTGAGAGAGCTGTACGTATGAATGTTGGCACTCTGATTGA
TTGATAATGTTCACGTATTGATGTTCATGTGGCGCTGTTGTTCGAGCAGG
ATCTGCAACCAACACCCTCGGAAACTGTGTCACGATATATCGGAACATAC
CTCGTACCGTGTACTGTTGTCTGCTGTGGACTGGGACGACGTACAGTATA
GCAGTAGTCCAACCATGATTCTTGCACTACGTAGTACACAGAATACTATT
GCACCCTGTCCTTGCCATGCCGATATCCGACAGCCGACTGCAATAATCTG
GATCGTGTCGATCATGCCGCAGAAACGTCGTCGTCTACAATTACACAGTA
ACAATCATGACACAGCAGAGTACAGTAGTACAACAACAACAGACAGTAGT
CGGTACTCGCAGTAACATTAGTGGTCATGTTGGCGACTATCTCCTGGGTC
CTGAACCAGTTCGGAACGTCACGTACGAGTATGATACCAGATACAAGAGT
AGGCTACATCTAGAGCAGAATAAATTTGAAGTATGTTTCAGGGCTGATAC
AAGTATGAATCGGAGGATTAGAAAGTAACACTCGTACGTATCGTACGAGC
ACTACGAGTAGCGAGGGAGTGTATGTCGTGGGTTCTCATTGGTGACGGGG
TGCATTGACTTTATACGGCCAGTTAGCTACGCGTATCCAAGTTGTACGTA
CAACAGTACTCTTATGCAGCCGCTACCCGCCCTCCCGTCTCAAACGGCAA
GTCATGGTGTCGTACACCAATTTTTGTGTTCCCAGGCAGGCTACTCGTAC
GTACCACGCGAACAAATTCCAGAGCCAAACAACGGTATAATATCTGCGAC
AACAATACGGTAGGACGAATCATAGTAATTGGTCAAGATTTCGGAGCACT
TTGGCCCACGTGGGGACTATGGGCACTCTCTAGTCTCTAGCAATCTCGCC
CCTCTGCCACCAATCCATTGTGAGAGGCAGAGCTTTTGCTGCCGTTGTCT
TGCGTGCTCGTGGGGGCCTGGTCCATTCCAATCACTACAGTACCCAGTAC
TGCTGGGTGTTTGCGTACCGTTGTGAGGAGCAGGCGCGAGTATTTTTGGC
GCCAGCAGGAAACCAGGACCGAGTTGACAAGGTTTCAAAGAGATAATGTG
GAGATATGTTGAATCGAGCAACGGTAAAACCCCCGGGTACCCGGACACCC
TTCCCCCAAAACACCCGCAGGTCTCGAAAACCCGCGGGTTGGGAAGTCGT
ACCGACCCGGTAAACGGGTATTACTCGTCCGGGTATATACCCGTGGGTAG
GTCAGAAGGGGTACAACTCTAGTCCTGACCGATCTCGCCGCACGTTGAGG
TGGCTACCGTACGATGACAATGGAAGAAGTTGGTTGGTATCATAGTAGGG
GGATAAAATAGCGGACCCCCCCCCCCCCCCCCCAGCATATTTTGCCGCCT
CGTGGATGGATGGCGTAGTCGCTCCAGCGTGCATTTCGGTACATTTACAG
TAAAGTACTTGGTATGCCCGCAGGCGTTGGTGATGGTGGTGAGGTTGATC
TGGATCGATTTGGCCATGAGGCTGTTGTTTCTTGTGTGTTGGGTGAGGTG
GGGGGGGGGATCGCTCCATCCCCGTGTGTTGTCCCGAACCAAGCTGAGGG
GACTACAGTAGACACGTTGTCGCATCTTTCGGAGAGTAACGCTTTATCCT
TATTTTTTTCGGTTCTGGTTCTTCCTTTACGTATAAAGTCTGAAAATACA
ACTAAAACGAATAACCGTATGTAACCGACCCCGCCCAACATCACACATTT
TTCCACGCCCACCATCTCTCCATGTCTTTCTTCAACCACTTCACCATGCC
TCCATGTCTCCATGTCTTCCTTCAAACAATACCCGCAAAGGGAGCAGCAG
GTGGCGGTAAAGGAGCTGCCTGAGAGTTTACACCATCTGTCTGTCTGTCC
CTCTTCCTTGTTATTTATTTTTTATTTTATAGCTCTGCCTATCCTGTCCA
TCTTCTTCGTGCTGTTTGCGTCTTGGTATGTTTATCCCTGAATGCGCGCT
CGTACTGCGTTCTTCCTGTACTACCGTGTTGCCCCCCTCCCCTGGGGACC
CCATGCGTGTACCGATGGCCAGACCTACAAGGAGGGGGGGGGGGGGCTGC
TGCTGTAGCTGTAGCTGTAGCTGTAGCTGTAGCTGTAGCTGACGATTGGA
TAGTCTTTCCCACTATTAATTATTATTTATTGTTACAAAGACATCAGCCG
CGACGTTCCAAACTGGTTCGGGGGCCAGGGGATAATCGTCAACCTCACTG
TGTGATACATCGGTCGCGCGGATTCTATCGGTCCTCAGATAAGTTATAAC
GCAGTGGCTCCCCTGGGGTGTCCCAGGCTCTACAGGATAATTTTGGGAAA
CAGGCCCCATCATTGTGTGTGCACTGGATCATAATCTTTCGGAGGGGGAC
GGGAAGTAACTGTGCATGTGTGACATTTTCACATCATGTGTACGTACCTG
AACCTATACCAATAGCGTGTTTTTCTTTTGATCCTTTTTTAGATCTTTGG
TTGTTATTTTATGAGTTTCTTTCGAGTCGTGTGTATTGTTGTTTTTTTTC
AGTCCGAAAGAACCCGCCCTCCTTGGGCACTGCTCTTTCTCATACTTCGT
TTTATGTATATTTTGCTTTACATTTGTGTTTCTCTGTTTTTCCTTCTTGA
ACGTGATTGTGCCGGATTTTGTGGCCGCGGGCGAGATCTTTTTGAGATGA
GCCAATGTGAGAAACAACAGTAAACCAGACCTGGTGTTATTGGATGCGCT
ACGAGATTGACGACTTCGGGCCCGGTAAGAATTACGGCAAAATGTAAGTA
TCACACCTACCAATGTCACCCAAATGTACCCCCTCCCTGGCGGCATTGCT
CTGAGGGAGGAGGTAGGTGTGGTGCTCACTTTTTTCCATGATTTTTACCG
GGCCCGACGCCGTCAGTCTCGTATCAGACAGCACCAGACCTTCGCTTGGG
GTGGTGTAAACCGAGGCAGCTCCTTTATCCCCCCCCCGCTGCTCCTTTGT
CTTCTTCGAGAGCAATCTCGAGGTTGCGCTGGCCTGGCGGGTGTCGTTTT
AAGAAGACGAAAACATTTGAGGGATGGTGGTGGTGCTGTAATAGATTATT
GAGAGAGATGGTGGGCTCAACAGTATCGTAGCATTAGATTTGGGAAAAAT
AAAAAATACCGTTCGCAACTAGTTAATTGTACAAAAAGGTCAGTACATGT
ACAGTAATCGTAGTGTGCTCGCGTCCTACGTGCAGGTGTGTCTGCGCTGT
GCCGCCGCTCGGCATTTCTCCGTTGGGGTGGGACACGGGGATGGGTACCG
TGTGTCTCGCGGCCAGCGTGGTGTGGGTTAAGCTGTGGACGAGCCTGGCG
CGACACGGGAAGATCAAGCCGCAGGTG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10258:7129..10955+

>mRNA_D-dudresnayi_contig10258.299.1 ID=mRNA_D-dudresnayi_contig10258.299.1|Name=mRNA_D-dudresnayi_contig10258.299.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at D-dudresnayi_contig10258:7129..10955+ (Desmarestia dudresnayi DdudBR16 monoicous)
TGCGTCATTCTCAAAACCGGAGGCAAACTACACACGTGCATCGCCAACCC
GACCCTGATGGCGAACAGGTCCTTCTCTCTGTCATCGTCTGCCGTAGCTG
CTGTGATACTTCTCCTGATCCTCACCTCGCTTCCAGCAGCCATCTCACAC
ACCACACGCCGAACATCAACATGCAACAGCAACAATAACAACAATGCGAT
TGCCATGCTAGCCAACACAGGCAGCACTCTCAGTGCAAGAACAGGAGCCT
GGCGCGGGATCAGAGTGCCGAGAGGAGGAGGAGGAGGAGGAGGAGAAAGA
CGAGGAACATTCAATTCGGAAAGGACGGATCATGCCGCTTCTGGCTGGGC
TGGGGTGCGGACTTCTGGAAGGAGCCCGGTTCGAGGCAGGGGTGGAGCCA
GGTCGCTTCGTGCGTCATTCTCAAAACCGGAGGCAAACTACACACGTGCA
TCGCCAACCCGACCCTGATGGCGAACAGGTCCTTCTCTCTGTCATCGTCT
GCCGTAGCTGCTGTGATACTTCTCCTGATCCTCACCTCGCTTCCAGCAGC
CATCTCACACACCACACGCCGAACATCAACATGCAACAGCAACAATAACA
ACAATGCGATTGCCATGCTAGCCAACACAGGCAGCACTCTCAGTGCAAGA
ACAGGAGCCTGGCGCGGGATCAGAGTGCCGAGAGGAGGAGGAGGAGGAGG
AGGAGAAAGACGAGGAACATTCAATTCGGAAAGGACGGATCATGCCGCTT
CTGGCTGGGCTGGGGTGCGGACTTCTGGAAGGAGCCCGGTTCGAGGCAGG
GGTGGAGCCAGGTCGCTTCGGTGTGTCTGCGCTGTGCCGCCGCTCGGCAT
TTCTCCGTTGGGGTGGGACACGGGGATGGGTACCGTGTGTCTCGCGGCCA
GCGTGGTGTGGGTTAAGCTGTGGACGAGCCTGGCGCGACACGGGAAGATC
AAGCCGCAGGTGGTGTGTCTGCGCTGTGCCGCCGCTCGGCATTTCTCCGT
TGGGGTGGGACACGGGGATGGGTACCGTGTGTCTCGCGGCCAGCGTGGTG
TGGGTTAAGCTGTGGACGAGCCTGGCGCGACACGGGAAGATCAAGCCGCA
GGTG
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