mRNA_D-dudresnayi_contig10257.298.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10257.298.1
Unique NamemRNA_D-dudresnayi_contig10257.298.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10257.298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10257contigD-dudresnayi_contig10257:76..543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size470
Cds size369
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927526.2940629-UTR-D-dudresnayi_contig10257:75..1741622927526.2940629-UTR-D-dudresnayi_contig10257:75..174Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10257 76..174 +
1690556792.6563108-UTR-D-dudresnayi_contig10257:75..1741690556792.6563108-UTR-D-dudresnayi_contig10257:75..174Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10257 76..174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927526.3122604-CDS-D-dudresnayi_contig10257:174..5431622927526.3122604-CDS-D-dudresnayi_contig10257:174..543Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10257 175..543 +
1690556792.6653306-CDS-D-dudresnayi_contig10257:174..5431690556792.6653306-CDS-D-dudresnayi_contig10257:174..543Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10257 175..543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10257.298.1prot_D-dudresnayi_contig10257.298.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10257 175..543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10257.298.1

>prot_D-dudresnayi_contig10257.298.1 ID=prot_D-dudresnayi_contig10257.298.1|Name=mRNA_D-dudresnayi_contig10257.298.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=123bp
MFMYGRSRTSKYGHRPSHPNYMPGRSTSGVHRPGRRREGGGGIINKIAAT
RHDKIRALYDDGKQRARALHDRDTDKPGVEAALQLHTQEYRRTQQRRMDM
GLPPPSLYTRSFTQNNAIQATTN
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mRNA from alignment at D-dudresnayi_contig10257:76..543+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10257.298.1 ID=mRNA_D-dudresnayi_contig10257.298.1|Name=mRNA_D-dudresnayi_contig10257.298.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=468bp|location=Sequence derived from alignment at D-dudresnayi_contig10257:76..543+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGGGGTACTCATTTGGGCGTACTCATTTGTTGCTTGCCTTAGTCAATTGA
CCATTGACCACGCATCCCTTTCGATTGGGGGGAGGAGGGGGGTGTACTCA
TGTTCATGTATGGCCGTAGTCGTACTTCGAAGTATGGCCATAGACCCTCG
CATCCCAACTATATGCCGGGACGGAGCACGTCGGGTGTGCACCGACCAGG
CAGGCGTCGCGAAGGGGGAGGGGGGATAATAAATAAAATAGCAGCAACTC
GACACGACAAGATACGTGCGCTTTACGATGATGGAAAACAACGCGCACGT
GCGCTTCACGATAGAGACACTGACAAGCCTGGGGTCGAGGCCGCACTTCA
ATTGCACACACAGGAATACAGACGAACACAGCAACGACGGATGGATATGG
GGCTCCCGCCTCCTTCCTTGTATACTCGTTCGTTCACGCAGAATAACGCC
ATACAGGCGACTACAAAT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10257:76..543+

>mRNA_D-dudresnayi_contig10257.298.1 ID=mRNA_D-dudresnayi_contig10257.298.1|Name=mRNA_D-dudresnayi_contig10257.298.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at D-dudresnayi_contig10257:76..543+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTCATGTATGGCCGTAGTCGTACTTCGAAGTATGGCCATAGACCCTC
GCATCCCAACTATATGCCGGGACGGAGCACGTCGGGTGTGCACCGACCAG
GCAGGCGTCGCGAAGGGGGAGGGGGGATAATAAATAAAATAGCAGCAACT
CGACACGACAAGATACGTGCGCTTTACGATGATGGAAAACAACGCGCACG
TGCGCTTCACGATAGAGACACTGACAAGCCTGGGGTCGAGGCCGCACTTC
AATTGCACACACAGGAATACAGACGAACACAGCAACGACGGATGGATATG
GGGCTCCCGCCTCCTTCCTTGTATACTCGTTCGTTCACGCAGAATAACGC
CATACAGGCGACTACAAATATGTTCATGTATGGCCGTAGTCGTACTTCGA
AGTATGGCCATAGACCCTCGCATCCCAACTATATGCCGGGACGGAGCACG
TCGGGTGTGCACCGACCAGGCAGGCGTCGCGAAGGGGGAGGGGGGATAAT
AAATAAAATAGCAGCAACTCGACACGACAAGATACGTGCGCTTTACGATG
ATGGAAAACAACGCGCACGTGCGCTTCACGATAGAGACACTGACAAGCCT
GGGGTCGAGGCCGCACTTCAATTGCACACACAGGAATACAGACGAACACA
GCAACGACGGATGGATATGGGGCTCCCGCCTCCTTCCTTGTATACTCGTT
CGTTCACGCAGAATAACGCCATACAGGCGACTACAAAT
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