mRNA_D-dudresnayi_contig10244.288.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10244.288.1
Unique NamemRNA_D-dudresnayi_contig10244.288.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10244.288.1 vs. uniprot
Match: A0A7S3HJ23_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJ23_9STRA)

HSP 1 Score: 264 bits (674), Expect = 1.280e-87
Identity = 129/175 (73.71%), Postives = 152/175 (86.86%), Query Frame = 1
Query:    1 LSGAITASYFAFYTAYDKKTKTLVFSNLSDLITGKRGLDWSLVEANKALSLSGLTTMMVAFLPECNEMRKDLLWISMVTLWGHSTYSFYKFYNFDIRKVLSDKAMKRASVLLGSAATFSLAAGYFEQFSTAMMAVTTTILSVAHFYTMEIDYKYVLQVRPYAYLPFPLAGIVLYS 525
            L G++ ASY AFYTA+DKKTKTL  SN+ DL   +RGLDWSLVEANKALSLSGLTTMM+AFLPE    RK+LLW+SM+TLWGHSTYS+YKFY FD RK+LS+K +K+ S+LLG+AA F+LAAGYFEQ S A++AV+TT+L VAHFYTMEIDYKYVLQVRP+AYLPFPLAG V+Y 
Sbjct:   14 LGGSVAASYLAFYTAFDKKTKTLQLSNVIDLFLCRRGLDWSLVEANKALSLSGLTTMMIAFLPEFERSRKELLWMSMLTLWGHSTYSYYKFYQFDYRKILSEKIVKKGSLLLGAAANFALAAGYFEQLSVAVLAVSTTVLGVAHFYTMEIDYKYVLQVRPFAYLPFPLAGWVIYK 188          
BLAST of mRNA_D-dudresnayi_contig10244.288.1 vs. uniprot
Match: A0A250XPT7_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XPT7_9CHLO)

HSP 1 Score: 149 bits (375), Expect = 2.210e-42
Identity = 77/145 (53.10%), Postives = 104/145 (71.72%), Query Frame = 1
Query:   82 LSDLITGKRGLDWSLVEANKALSLSGLTTMMVAFLPECNEMRKDLLWISMVTLWGHSTYSFYKFYNFDIRKVLSDKAMKRASVLLGSAATFSLAAGYFEQFSTAMMAVTTTILSVAHFYTMEIDYKYVLQVRPYAYLPFPLAGIV 516
            ++D++  KRG  +SLVE NKALSL GLT M+ AFLP+     K+LLWISM +LW HS YS Y+FY +  +K++S+  +K+ASV+ G  +  SL AG+F   S A +  ++TI  ++HF+TME+DYKY LQVRPYAYLPF LA  V
Sbjct:   34 ITDVLLFKRGARFSLVEFNKALSLVGLTLMLFAFLPQFASQNKELLWISMNSLWIHSAYSMYQFYGYSPKKLMSEPKIKQASVVFGQLSHASLIAGFFGFISPAALLWSSTIAGISHFWTMEVDYKYRLQVRPYAYLPFVLAAAV 178          
BLAST of mRNA_D-dudresnayi_contig10244.288.1 vs. uniprot
Match: A0A7S4WIX1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WIX1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 7.510e-31
Identity = 83/198 (41.92%), Postives = 112/198 (56.57%), Query Frame = 1
Query:    1 LSGAITASYFAFYTAYDKKTKTLVFSNLSDLITGKRGLDWSLVEANKALSLSGLTTMMVAFLPECN---EMRKDLLWISMVTLWGHSTYSFYKFYN-----------------FDIRKVLSDKAMKRASVLLGSAATFSLAAGYFE--QFSTAMMAVTTTILSVAHFYTMEIDYKYVLQVRPYAYLPFPLA-GIVLYS 525
            +S A   SY  FYTAY K+TK L FS L  + T  + +D +LVE NKA+SL+G+T   +A +P      E +  LL+ ++V L  HS YS  K+Y                      K +  + +K+ASV+LGS     L  GYFE   F T  +A+    L VAHFYTMEIDYK VLQVRP+AY+ FP++ G V+Y+
Sbjct:    5 ISAATLLSYLLFYTAYSKETKKLEFSLLLTVFTCGKSVDHTLVELNKAISLAGMTVFGLALMPPVAPTVEAKNSLLFEALVMLTLHSIYSNLKYYGGKNIPPLTTFPRMLPDLASSNKKIRAEGVKKASVILGSLGQMGLWLGYFEYVSFVTVSLAIGLA-LGVAHFYTMEIDYKGVLQVRPWAYIAFPISIGGVIYA 201          
BLAST of mRNA_D-dudresnayi_contig10244.288.1 vs. uniprot
Match: A0A7S2MUM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MUM5_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.030e-27
Identity = 76/175 (43.43%), Postives = 99/175 (56.57%), Query Frame = 1
Query:    1 LSGAITASYFAFYTAYDKKTKTLVFSNLSDLITGKRGLDWSLVEANKALSLSGLTTMMVAFLPECNEMRKDLLWISMVTLWGHSTYSFYKFYN-----------------FDIRKVLSDKAMKRASVLLGSAATFSLAAGYFEQFSTAMMAVTT-TILSVAHFYTMEIDYKYVLQ 471
            +S A   SY  FYTAY K+TK L F+ L  + T  + +D +LVE NKA+SL+G+T   +A +P  NE  K LL+ ++V L  HS YS  K+Y                      K +  + +K+ASVLLGSA    L AGYFE  S   +A+    +L VAHFYTMEIDYK VLQ
Sbjct:    5 VSAATLLSYLLFYTAYSKETKKLEFNLLIVVFTFGKSVDHTLVELNKAISLAGMTVFGLALIPPFNE-NKTLLFEALVMLTIHSIYSNIKYYGGKNIPSIATYPRMFSDLASSNKKIRAEGVKKASVLLGSAGQAGLWAGYFEYVSFVTVALAVGLLLGVAHFYTMEIDYKVVLQ 178          
BLAST of mRNA_D-dudresnayi_contig10244.288.1 vs. uniprot
Match: A0A7S2V2Y8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Y8_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 9.260e-15
Identity = 60/175 (34.29%), Postives = 91/175 (52.00%), Query Frame = 1
Query:    7 GAITASYFAFYTAYDKKTKTLVFSNLSDLITGKRGLDWSLVEANKALSLSGLTTMMVAFL---PECNEMRKDLLWISMVTLWGHSTYSFYKFYNFDIRKVLSDKAMKRASVLLGSAATFSLAAGYFEQFSTAMMAVTTTILSVAHFYTME-IDYKYVLQVRPYAYLPFPLAGIVL 519
            G   A Y   Y+A+DK  KTL F  L +L + K+ LD+SL E NKALSL+G+T + ++FL      +  R  L  ++MV L  H+TYS + FY   + K+ ++   K+ +++ G  A  S  A +       +      + ++ HFY ME +  K  L VRP  Y+ F  A   L
Sbjct:   33 GINLAFYLILYSAFDKSKKTLNFQLLKNLFSFKK-LDYSLRELNKALSLAGMTQLSLSFLLLKTNYDGFRWSLF-LAMVMLLVHATYSSWAFYRLKLDKMFTNNP-KKLAIIFGLIANISTVASFMGFIPMLVAPFLCVVFAILHFYNMETVGGK--LHVRPAGYMAFVAASATL 202          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10244.288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S3HJ23_9STRA1.280e-8773.71Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A250XPT7_9CHLO2.210e-4253.10Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A7S4WIX1_9STRA7.510e-3141.92Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2MUM5_9STRA1.030e-2743.43Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S2V2Y8_9STRA9.260e-1534.29Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10244contigD-dudresnayi_contig10244:8763..9287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue4.3e-20
Seed eggNOG ortholog72019.SARC_15046T0
EggNOG OGs2ESEG@1,2SV07@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size525
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927525.307619-CDS-D-dudresnayi_contig10244:8762..92871622927525.307619-CDS-D-dudresnayi_contig10244:8762..9287Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10244 8763..9287 -
1690556792.2785382-CDS-D-dudresnayi_contig10244:8762..92871690556792.2785382-CDS-D-dudresnayi_contig10244:8762..9287Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10244 8763..9287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10244.288.1prot_D-dudresnayi_contig10244.288.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10244 8763..9287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10244.288.1

>prot_D-dudresnayi_contig10244.288.1 ID=prot_D-dudresnayi_contig10244.288.1|Name=mRNA_D-dudresnayi_contig10244.288.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=175bp
LSGAITASYFAFYTAYDKKTKTLVFSNLSDLITGKRGLDWSLVEANKALS
LSGLTTMMVAFLPECNEMRKDLLWISMVTLWGHSTYSFYKFYNFDIRKVL
SDKAMKRASVLLGSAATFSLAAGYFEQFSTAMMAVTTTILSVAHFYTMEI
DYKYVLQVRPYAYLPFPLAGIVLYS
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mRNA from alignment at D-dudresnayi_contig10244:8763..9287-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10244.288.1 ID=mRNA_D-dudresnayi_contig10244.288.1|Name=mRNA_D-dudresnayi_contig10244.288.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=525bp|location=Sequence derived from alignment at D-dudresnayi_contig10244:8763..9287- (Desmarestia dudresnayi DdudBR16 monoicous)
CTAAGTGGAGCAATTACTGCTTCCTATTTTGCATTTTATACTGCCTATGA TAAAAAGACGAAAACATTAGTATTTTCAAATCTTTCTGATCTTATTACTG GTAAACGTGGGTTAGATTGGTCATTAGTTGAAGCTAATAAAGCTCTATCC TTATCAGGGTTAACCACCATGATGGTAGCTTTTCTTCCTGAATGTAATGA AATGAGAAAAGATTTATTATGGATATCTATGGTAACCCTGTGGGGACATA GTACATATTCATTTTATAAATTTTATAACTTCGATATTCGTAAAGTTTTA TCTGATAAAGCAATGAAACGTGCTTCAGTACTACTCGGTAGTGCTGCAAC TTTTTCTTTGGCTGCTGGATATTTTGAACAATTTAGTACTGCAATGATGG CTGTTACTACTACTATACTTAGTGTTGCTCATTTTTATACGATGGAAATT GATTATAAATATGTACTTCAAGTACGTCCTTATGCTTATCTACCTTTCCC TCTGGCTGGGATAGTATTATATAGT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10244:8763..9287-

>mRNA_D-dudresnayi_contig10244.288.1 ID=mRNA_D-dudresnayi_contig10244.288.1|Name=mRNA_D-dudresnayi_contig10244.288.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at D-dudresnayi_contig10244:8763..9287- (Desmarestia dudresnayi DdudBR16 monoicous)
CTAAGTGGAGCAATTACTGCTTCCTATTTTGCATTTTATACTGCCTATGA
TAAAAAGACGAAAACATTAGTATTTTCAAATCTTTCTGATCTTATTACTG
GTAAACGTGGGTTAGATTGGTCATTAGTTGAAGCTAATAAAGCTCTATCC
TTATCAGGGTTAACCACCATGATGGTAGCTTTTCTTCCTGAATGTAATGA
AATGAGAAAAGATTTATTATGGATATCTATGGTAACCCTGTGGGGACATA
GTACATATTCATTTTATAAATTTTATAACTTCGATATTCGTAAAGTTTTA
TCTGATAAAGCAATGAAACGTGCTTCAGTACTACTCGGTAGTGCTGCAAC
TTTTTCTTTGGCTGCTGGATATTTTGAACAATTTAGTACTGCAATGATGG
CTGTTACTACTACTATACTTAGTGTTGCTCATTTTTATACGATGGAAATT
GATTATAAATATGTACTTCAAGTACGTCCTTATGCTTATCTACCTTTCCC
TCTGGCTGGGATAGTATTATATAGTCTAAGTGGAGCAATTACTGCTTCCT
ATTTTGCATTTTATACTGCCTATGATAAAAAGACGAAAACATTAGTATTT
TCAAATCTTTCTGATCTTATTACTGGTAAACGTGGGTTAGATTGGTCATT
AGTTGAAGCTAATAAAGCTCTATCCTTATCAGGGTTAACCACCATGATGG
TAGCTTTTCTTCCTGAATGTAATGAAATGAGAAAAGATTTATTATGGATA
TCTATGGTAACCCTGTGGGGACATAGTACATATTCATTTTATAAATTTTA
TAACTTCGATATTCGTAAAGTTTTATCTGATAAAGCAATGAAACGTGCTT
CAGTACTACTCGGTAGTGCTGCAACTTTTTCTTTGGCTGCTGGATATTTT
GAACAATTTAGTACTGCAATGATGGCTGTTACTACTACTATACTTAGTGT
TGCTCATTTTTATACGATGGAAATTGATTATAAATATGTACTTCAAGTAC
GTCCTTATGCTTATCTACCTTTCCCTCTGGCTGGGATAGTATTATATAGT
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