mRNA_D-dudresnayi_contig9970.28778.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9970.28778.1
Unique NamemRNA_D-dudresnayi_contig9970.28778.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9970.28778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9970contigD-dudresnayi_contig9970:4469..4801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930959.5935788-CDS-D-dudresnayi_contig9970:4468..48011622930959.5935788-CDS-D-dudresnayi_contig9970:4468..4801Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9970 4469..4801 +
1690557980.523838-CDS-D-dudresnayi_contig9970:4468..48011690557980.523838-CDS-D-dudresnayi_contig9970:4468..4801Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9970 4469..4801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9970.28778.1prot_D-dudresnayi_contig9970.28778.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9970 4469..4801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9970.28778.1

>prot_D-dudresnayi_contig9970.28778.1 ID=prot_D-dudresnayi_contig9970.28778.1|Name=mRNA_D-dudresnayi_contig9970.28778.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=111bp
RLSVDLGHQLALLENAHLAELCLSLLRARVGEVGMCEYLRDVIAVCRVTT
QDFQQQVCSKRVGHIMQHRTGKLVVAPIRRGIKVLDSAHEVTLLVDTQQT
VSSRVHTAIHQ
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mRNA from alignment at D-dudresnayi_contig9970:4469..4801+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9970.28778.1 ID=mRNA_D-dudresnayi_contig9970.28778.1|Name=mRNA_D-dudresnayi_contig9970.28778.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at D-dudresnayi_contig9970:4469..4801+ (Desmarestia dudresnayi DdudBR16 monoicous)
CGCCTGTCTGTCGATCTTGGTCATCAGCTTGCGCTGCTTGAGAATGCTCA
CTTGGCAGAGCTTTGCCTCTCGCTTCTTCGAGCACGGGTCGGTGAAGTAG
GGATGTGCGAGTATTTGCGTGATGTCATAGCGGTGTGCAGGGTTACGACG
CAAGATTTTCAGCAACAAGTCTGCAGCAAGAGGGTCGGGCACATTATGCA
GCACCGCACTGGTAAACTCGTCGTCGCCCCAATTCGACGCGGCATCAAAG
TTCTCGATAGTGCGCACGAGGTCACCCTCTTGGTTGACACTCAGCAGACT
GTTTCCAGTCGGGTTCACACAGCAATACATCAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9970:4469..4801+

>mRNA_D-dudresnayi_contig9970.28778.1 ID=mRNA_D-dudresnayi_contig9970.28778.1|Name=mRNA_D-dudresnayi_contig9970.28778.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at D-dudresnayi_contig9970:4469..4801+ (Desmarestia dudresnayi DdudBR16 monoicous)
CGCCTGTCTGTCGATCTTGGTCATCAGCTTGCGCTGCTTGAGAATGCTCA
CTTGGCAGAGCTTTGCCTCTCGCTTCTTCGAGCACGGGTCGGTGAAGTAG
GGATGTGCGAGTATTTGCGTGATGTCATAGCGGTGTGCAGGGTTACGACG
CAAGATTTTCAGCAACAAGTCTGCAGCAAGAGGGTCGGGCACATTATGCA
GCACCGCACTGGTAAACTCGTCGTCGCCCCAATTCGACGCGGCATCAAAG
TTCTCGATAGTGCGCACGAGGTCACCCTCTTGGTTGACACTCAGCAGACT
GTTTCCAGTCGGGTTCACACAGCAATACATCAGCGCCTGTCTGTCGATCT
TGGTCATCAGCTTGCGCTGCTTGAGAATGCTCACTTGGCAGAGCTTTGCC
TCTCGCTTCTTCGAGCACGGGTCGGTGAAGTAGGGATGTGCGAGTATTTG
CGTGATGTCATAGCGGTGTGCAGGGTTACGACGCAAGATTTTCAGCAACA
AGTCTGCAGCAAGAGGGTCGGGCACATTATGCAGCACCGCACTGGTAAAC
TCGTCGTCGCCCCAATTCGACGCGGCATCAAAGTTCTCGATAGTGCGCAC
GAGGTCACCCTCTTGGTTGACACTCAGCAGACTGTTTCCAGTCGGGTTCA
CACAGCAATACATCAG
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