mRNA_D-dudresnayi_contig997.28775.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig997.28775.1
Unique NamemRNA_D-dudresnayi_contig997.28775.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig997.28775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig997contigD-dudresnayi_contig997:1271..4767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons4
Model size690
Cds size660
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig997.28775.1prot_D-dudresnayi_contig997.28775.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig997 1299..4767 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930959.3352313-UTR-D-dudresnayi_contig997:1270..12981622930959.3352313-UTR-D-dudresnayi_contig997:1270..1298Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig997 1271..1298 +
1690557980.3754704-UTR-D-dudresnayi_contig997:1270..12981690557980.3754704-UTR-D-dudresnayi_contig997:1270..1298Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig997 1271..1298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930959.361414-CDS-D-dudresnayi_contig997:1298..13551622930959.361414-CDS-D-dudresnayi_contig997:1298..1355Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig997 1299..1355 +
1690557980.3865638-CDS-D-dudresnayi_contig997:1298..13551690557980.3865638-CDS-D-dudresnayi_contig997:1298..1355Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig997 1299..1355 +
1622930959.3825788-CDS-D-dudresnayi_contig997:2447..25111622930959.3825788-CDS-D-dudresnayi_contig997:2447..2511Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig997 2448..2511 +
1690557980.3988388-CDS-D-dudresnayi_contig997:2447..25111690557980.3988388-CDS-D-dudresnayi_contig997:2447..2511Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig997 2448..2511 +
1622930959.401509-CDS-D-dudresnayi_contig997:3028..32691622930959.401509-CDS-D-dudresnayi_contig997:3028..3269Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig997 3029..3269 +
1690557980.4165316-CDS-D-dudresnayi_contig997:3028..32691690557980.4165316-CDS-D-dudresnayi_contig997:3028..3269Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig997 3029..3269 +
1622930959.4197206-CDS-D-dudresnayi_contig997:4469..47671622930959.4197206-CDS-D-dudresnayi_contig997:4469..4767Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig997 4470..4767 +
1690557980.435465-CDS-D-dudresnayi_contig997:4469..47671690557980.435465-CDS-D-dudresnayi_contig997:4469..4767Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig997 4470..4767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig997.28775.1

>prot_D-dudresnayi_contig997.28775.1 ID=prot_D-dudresnayi_contig997.28775.1|Name=mRNA_D-dudresnayi_contig997.28775.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=220bp
MSACASEARPWAIAFLSLKLVLIAWGVYLAWVTRRINYALVEGRQISWSI
YLFAVLAAILIFIGSSGLSIEYWALSKAFVFSLSSCTALVMVLVPKLWGA
HKQLDVDMSVLTSSATSMSLRANSSGGIDVNYLSEPDADGAGTWTVICSH
CHQQTDASRGFHTRMKSTAANTLYHTGAGLGVGGGGDGGGPTLRRAAKRK
KKQAIVGQSASDFSSSAADR
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mRNA from alignment at D-dudresnayi_contig997:1271..4767+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig997.28775.1 ID=mRNA_D-dudresnayi_contig997.28775.1|Name=mRNA_D-dudresnayi_contig997.28775.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3497bp|location=Sequence derived from alignment at D-dudresnayi_contig997:1271..4767+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCTTGTTGATGGTACTGCGGTGGTGGAGATGTCGGCGTGTGCATCTGAGG
CTCGTCCGTGGGCGATCGCCTTCTTATCCTTGAAGGTGCGTTTTTGGGTC
CGTCCAGCGCGCGTTTAAGAGTGTGACCGCGCGCGATGTTTGATTGGAGC
CGCCTCGACGCTTTTGTAGGACGGATCTTTGGGATGTGTTCGTTTTATTA
GATGTATGATTGGTACCAACGTGGGCTACTCAGCAGTTTCAGAAAATTCT
TCTTCCACTATCCCTAACGCGAACTCTAATGAACACACCTATACTATTAT
AATGGAGAATCAAAACTTGTGTAAAGTTCCTGTAACATTCCGTCCTACAA
CATTAACCATTGTTGCTAAACCCACGTTGTGTTTGGGAGCGTTTGCGGCG
TGTAACAAGACCAAACACGCGGGTTGTGACCGAAGGCACGACCGATGAGA
CTTGTTTGGTGTTGTTTGTTTGACGGGGGGGTTACTATAAGTATAACAAT
TTAATTATTTTCATTTTGTTGTTGAAAATAATATACTATCATTCAATACG
AGGTATCAGGTATATCGATAATAATGTAATACGAAGTATAACCATATACT
GTAGTGGTATAGGTGTTGTGTAGTAGTAGCGGTATAGTAGTAGTAGTAGT
AGGTAGGTAGAAATTCTATTAATGGTATGAAACGCCAAAAAAATAATTAA
TTCATACTAATTCAAGACATCAATTAATTTTCACTTTCGTAGGAGACGAT
AATGGTTCATACGAAGTAATATATTTCAAATTTGTAAAAAAAAAATAAAA
AGAACAGTGTGCTTGAAATATATGTGAGGGAGAGACGGTCGAGAGACCTG
AATATATTCAACATCGAAAATAAAAAATATAAGATACCTACTCGTAACAC
AATACATTGTCTTGTGAGAGAGAAATAATGAAAGAACCAAGGAGCATACC
TCGTATAATATTATACTTCGAAGTAGGAGCTTTGTGAATTCGTCTGAGAC
TTATCATGTCATAGTTGTAAAAGAGACCTCCGTTTCTGCCTGGTTGGTGA
AAACCCGACGTGCTCCGTCCCCCGGCATTGAAGGGATGCGAAGGTCTTAT
GGTCATACGACTATTAATACGGCTATGCATGAAATGAGAACCCTCCCTCC
CCTCCTCCCTCTGTGTTGGTGCGACAGCTCGTCTTGATCGCTTGGGGGGT
TTACCTGGCGTGGGTAACGCGGAGAATCAACTATGCTCTAGGTAAAAATA
CCACGAGACGGCCGTCGCTAGAGCTGTAGCTGTACAGTGGAGGTCACGGT
TTAAGACAGCCGTGGGTAGAGCTGGAGCTGTACAGTATATGCCTGTGTGA
TGTCTGGTGTGGTTTTTTCTTTGTGCTCTTTCTTGCACATGTCTTGCGAT
TTTATAATTTTTTAGTTTTGGGTGTTGTGGCGTTTTTTGTTGAATTTATT
TATTATATGGTCTTGTCAGGTAAAAGCGTAAGGCGAGACGACTCTCTTCA
ATTGCATCTGATGATAACGGTTCTCTTTGTGTGTGTGTGTTTTGTCTCTT
GCGAATATGTAACGCTCTGACCCCAGCTGCTTGCGTTTGGTTGGTTGGTT
AGTTGGTTGGTTTGATTTTTGGTTGATTGGTTGATTGATTGATTGATTGA
CTGGTTGGTTGATTGATCGTTTGATTGATTGGTTGATCCATCGACTGATT
GATCGACCGTTCATTTGACTTGCTTGCCTGTCCCGGTCACGTACAACATA
AATAACAGTGGAGGGTCGACAGATATCTTGGAGCATTTACCTCTTCGCCG
TCCTGGCGGCTATCCTCATCTTCATAGGATCGTCGGGTTTGAGCATAGAA
TACTGGGCTCTCTCCAAGGCTTTCGTATTTTCTCTCAGCAGCTGCACCGC
GCTCGTGATGGTCCTCGTGCCGAAGCTGTGGGGCGCCCACAAGCAGCTGG
ACGTTGACATGTCGGTGTTGACGTCATCGGCAACGTCCATGTCTCTCCGG
TGGGTTTTTGAACGATTGATTGATTGATTGATTGATTGATGGCTTGACAG
GTTTTGCATGTGAAATTTAATGTTTTTTATTTTCATTTTACTACAAGCTG
GGCCAGCCATAGCGCATACAAAGTGATGAAATCGTTTTTCCGCAGCGGTT
TTTACGAATTCTAAGCTGAAATTTTGACACGTGTTTCCTACGAGTATAAC
ACATGCATTCGAAACTGCACTATTGGAGTTTTCGTTTTTTTTGCGCGAAA
TATGATATAAGCTCTCGAAAAAGACGGATTTTGTTTTGGCCATAAGTGAG
GGAAAAAAACAAAAGCTCAAACGGTGCAGTTTTGGGTCTCTCGGCAACAC
CGCTGTAAATCATATCTCCAATTTTCAAGCAATAATCGAAGAAACCGCTC
CGGAAATCGAGTTTTTTCATGCGCCATCGTACCAATGGTGTTTTGTATTG
GGATCGTAATAGGCCATAATTCTTTATGGAACACCAATTGGGTCATGAAA
TTTTACCGTTTGGCTTGTAATGTCCCCAGGTGCATGCACACCATTTTCAA
CTTGATCGATGACACTCGAATTTTACTATTTTTTTCATACGGATTTGAGT
CTAAAAAATCGAAACACTCCAAAGAATGCCGTCACTTGATCATTTATTTT
TACGATATCAATTCGGATCCTAAAATCCCGACACCTGCGGTTTCGCTACT
GCCTCATATATATATATATATATTTTTTTTTTTGTAGTGGTAAATATTGA
AGTCCTAGCTCCTAAAAACGGCCGAGTAAGACCTGTCGGGACTACTGTGT
TTTTTGTGGCTGGCCCAGTTTGTAGCACGTTTTTTTTTACGTTTTGTTTT
TTCGTGTGTGCTGTTACATATATAGAGCTATATATTCAGGAACACCCATG
TTGGCGTTATGTCCTTGCCGTGCTTCGCGAACGCATTTATTTTTTTTTGC
AATAGGCTCCCGATCTTTGTGTATGTAAGATATGAAAAAAACATAAAAGA
GCGCCCAAATGCTGGAGGTGTCTCTATTAGGAGTAGGAACGGTGCTGCGT
CTCGAAAATGATGTGTGGTCAAATGACTAAGGCAAACAACGAATGAGTAC
CCCTCCACCCCCGCCATGTCCGCCCTTCTTTCGGTGCGCGCTTGCATCTA
CGAACGAACCTTGGCGCTTTTGTGTCCCGGTCGGCTAATCGAAACGCAGA
GCAAACTCCAGCGGGGGCATTGACGTAAACTACCTTTCGGAACCGGACGC
CGACGGAGCGGGAACCTGGACTGTCATCTGTTCCCACTGCCACCAGCAAA
CCGACGCCTCTCGGGGTTTCCATACCCGAATGAAGTCCACGGCCGCTAAC
ACGCTGTACCACACGGGCGCAGGCTTAGGCGTTGGAGGCGGCGGCGATGG
TGGCGGTCCCACTCTCAGACGAGCAGCCAAAAGGAAGAAAAAGCAGGCGA
TTGTTGGCCAGTCTGCGAGCGACTTCTCATCGTCGGCGGCGGACCGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig997:1271..4767+

>mRNA_D-dudresnayi_contig997.28775.1 ID=mRNA_D-dudresnayi_contig997.28775.1|Name=mRNA_D-dudresnayi_contig997.28775.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at D-dudresnayi_contig997:1271..4767+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCGGCGTGTGCATCTGAGGCTCGTCCGTGGGCGATCGCCTTCTTATC
CTTGAAGATGTCGGCGTGTGCATCTGAGGCTCGTCCGTGGGCGATCGCCT
TCTTATCCTTGAAGCTCGTCTTGATCGCTTGGGGGGTTTACCTGGCGTGG
GTAACGCGGAGAATCAACTATGCTCTAGCTCGTCTTGATCGCTTGGGGGG
TTTACCTGGCGTGGGTAACGCGGAGAATCAACTATGCTCTAGTGGAGGGT
CGACAGATATCTTGGAGCATTTACCTCTTCGCCGTCCTGGCGGCTATCCT
CATCTTCATAGGATCGTCGGGTTTGAGCATAGAATACTGGGCTCTCTCCA
AGGCTTTCGTATTTTCTCTCAGCAGCTGCACCGCGCTCGTGATGGTCCTC
GTGCCGAAGCTGTGGGGCGCCCACAAGCAGCTGGACGTTGACATGTCGGT
GTTGACGTCATCGGCAACGTCCATGTCTCTCCGTGGAGGGTCGACAGATA
TCTTGGAGCATTTACCTCTTCGCCGTCCTGGCGGCTATCCTCATCTTCAT
AGGATCGTCGGGTTTGAGCATAGAATACTGGGCTCTCTCCAAGGCTTTCG
TATTTTCTCTCAGCAGCTGCACCGCGCTCGTGATGGTCCTCGTGCCGAAG
CTGTGGGGCGCCCACAAGCAGCTGGACGTTGACATGTCGGTGTTGACGTC
ATCGGCAACGTCCATGTCTCTCCGAGCAAACTCCAGCGGGGGCATTGACG
TAAACTACCTTTCGGAACCGGACGCCGACGGAGCGGGAACCTGGACTGTC
ATCTGTTCCCACTGCCACCAGCAAACCGACGCCTCTCGGGGTTTCCATAC
CCGAATGAAGTCCACGGCCGCTAACACGCTGTACCACACGGGCGCAGGCT
TAGGCGTTGGAGGCGGCGGCGATGGTGGCGGTCCCACTCTCAGACGAGCA
GCCAAAAGGAAGAAAAAGCAGGCGATTGTTGGCCAGTCTGCGAGCGACTT
CTCATCGTCGGCGGCGGACCGGAGCAAACTCCAGCGGGGGCATTGACGTA
AACTACCTTTCGGAACCGGACGCCGACGGAGCGGGAACCTGGACTGTCAT
CTGTTCCCACTGCCACCAGCAAACCGACGCCTCTCGGGGTTTCCATACCC
GAATGAAGTCCACGGCCGCTAACACGCTGTACCACACGGGCGCAGGCTTA
GGCGTTGGAGGCGGCGGCGATGGTGGCGGTCCCACTCTCAGACGAGCAGC
CAAAAGGAAGAAAAAGCAGGCGATTGTTGGCCAGTCTGCGAGCGACTTCT
CATCGTCGGCGGCGGACCGG
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