mRNA_D-dudresnayi_contig9968.28773.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9968.28773.1
Unique NamemRNA_D-dudresnayi_contig9968.28773.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9968.28773.1 vs. uniprot
Match: D8LBN4_ECTSI (V-SNARE coiled-coil homology domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN4_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 9.420e-22
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 3 
Query:    6 GGLGEMHAAVSEARDLAIERGEKLDNLVDKSRQLEDSAMAFGDMAKQLRRQQEDESCCIS 185
            GG+   HAA SEARDLAIERGEKL+NLVD+SRQLEDSAMAFGDMAKQLR+QQEDE+CCIS
Sbjct: 1410 GGVSGAHAAASEARDLAIERGEKLENLVDRSRQLEDSAMAFGDMAKQLRKQQEDEACCIS 1469
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9968.28773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBN4_ECTSI9.420e-2285.00V-SNARE coiled-coil homology domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9968contigD-dudresnayi_contig9968:763..1322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size560
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9968.28773.1prot_D-dudresnayi_contig9968.28773.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9968 783..950 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930959.069993-UTR-D-dudresnayi_contig9968:762..7821622930959.069993-UTR-D-dudresnayi_contig9968:762..782Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9968 763..782 +
1690557980.2698345-UTR-D-dudresnayi_contig9968:762..7821690557980.2698345-UTR-D-dudresnayi_contig9968:762..782Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9968 763..782 +
1622930959.1119733-UTR-D-dudresnayi_contig9968:950..13221622930959.1119733-UTR-D-dudresnayi_contig9968:950..1322Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9968 951..1322 +
1690557980.2861574-UTR-D-dudresnayi_contig9968:950..13221690557980.2861574-UTR-D-dudresnayi_contig9968:950..1322Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9968 951..1322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930959.095017-CDS-D-dudresnayi_contig9968:782..9501622930959.095017-CDS-D-dudresnayi_contig9968:782..950Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9968 783..950 +
1690557980.277852-CDS-D-dudresnayi_contig9968:782..9501690557980.277852-CDS-D-dudresnayi_contig9968:782..950Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9968 783..950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9968.28773.1

>prot_D-dudresnayi_contig9968.28773.1 ID=prot_D-dudresnayi_contig9968.28773.1|Name=mRNA_D-dudresnayi_contig9968.28773.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=56bp
MHAAVSEARDLAIERGEKLDNLVDKSRQLEDSAMAFGDMAKQLRRQQEDE
SCCIS*
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mRNA from alignment at D-dudresnayi_contig9968:763..1322+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9968.28773.1 ID=mRNA_D-dudresnayi_contig9968.28773.1|Name=mRNA_D-dudresnayi_contig9968.28773.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=560bp|location=Sequence derived from alignment at D-dudresnayi_contig9968:763..1322+ (Desmarestia dudresnayi DdudBR16 monoicous)
GTGCCGGTGGGTTGGGCGAGATGCATGCGGCGGTAAGCGAGGCGCGTGAC
CTGGCGATAGAGCGAGGGGAAAAGTTAGATAACTTGGTGGACAAGTCACG
CCAGCTGGAGGATAGTGCCATGGCGTTTGGAGACATGGCCAAGCAGCTCC
GGAGACAACAGGAAGACGAATCGTGCTGCATTTCGTAGCCCCCGCTGTGC
GTCGTTTTCCCGGGGGGATTGAGTAATACGTACAACATGTGTCTCATAGT
TTATTTTTTGTATGTACCAACACTTTTCAAAGTTAACCCCTATGATGGTT
CCTCTAGAACTGTGTCGTTGCCGCCTTTGATATTTTTTTTCGTAGATTAT
CTTTCAGACTGCTCAAGTGTGGCATGGTCGGATCTGATATTTGTATCTTG
GCGGATGGACAGATGACAGGACTACTTGTAGAGACGTCAACGTGTGTACG
TCCGCATTGCCATCCTCTGGAAGCACCACGTTAAGTTGAGGCGCTATAAA
GACGCAGGCACACGATTCACGATTTCCAGCAATCAAGCACCACTTTCTAA
GGAATGCACA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9968:763..1322+

>mRNA_D-dudresnayi_contig9968.28773.1 ID=mRNA_D-dudresnayi_contig9968.28773.1|Name=mRNA_D-dudresnayi_contig9968.28773.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at D-dudresnayi_contig9968:763..1322+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCATGCGGCGGTAAGCGAGGCGCGTGACCTGGCGATAGAGCGAGGGGA
AAAGTTAGATAACTTGGTGGACAAGTCACGCCAGCTGGAGGATAGTGCCA
TGGCGTTTGGAGACATGGCCAAGCAGCTCCGGAGACAACAGGAAGACGAA
TCGTGCTGCATTTCGTAGATGCATGCGGCGGTAAGCGAGGCGCGTGACCT
GGCGATAGAGCGAGGGGAAAAGTTAGATAACTTGGTGGACAAGTCACGCC
AGCTGGAGGATAGTGCCATGGCGTTTGGAGACATGGCCAAGCAGCTCCGG
AGACAACAGGAAGACGAATCGTGCTGCATTTCGTAG
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