mRNA_D-dudresnayi_contig9921.28734.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9921.28734.1
Unique NamemRNA_D-dudresnayi_contig9921.28734.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9921.28734.1 vs. uniprot
Match: A0A7S3HHT5_9STRA (40S ribosomal protein S12 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7S3HHT5_9STRA)

HSP 1 Score: 179 bits (454), Expect = 3.220e-56
Identity = 90/95 (94.74%), Postives = 91/95 (95.79%), Query Frame = 1 
Query:   13 VKALDAGKARLCILAKDCDNEEYKKLVQALCAESGVHLIMADAGTEISEWCGLAKLDAEGNVRKAVRCSVAVVTDFGEESSALNVVLNYVKSQKE 297
            VKALD G ARLCILAKDCDNEEYKKLVQALCAESGVHLI+ADAGTEI EW GLAKLDAEGNVRKAVRCSVAVVTDFGEESSALNVVLNYVKSQKE
Sbjct:   49 VKALDRGSARLCILAKDCDNEEYKKLVQALCAESGVHLILADAGTEIGEWVGLAKLDAEGNVRKAVRCSVAVVTDFGEESSALNVVLNYVKSQKE 143
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BLAST of mRNA_D-dudresnayi_contig9921.28734.1 vs. uniprot
Match: A0A482T4E4_9ARCH (Ribosomal L7Ae/L30e/S12e/Gadd45 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T4E4_9ARCH)

HSP 1 Score: 151 bits (382), Expect = 6.750e-46
Identity = 74/93 (79.57%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:   13 VKALDAGKARLCILAKDCDNEEYKKLVQALCAESGVHLIMADAGTEISEWCGLAKLDAEGNVRKAVRCSVAVVTDFGEESSALNVVLNYVKSQ 291
            +KALD G A+LCIL+ DCDN EYKKLVQALCAE+ VHLIMAD GTEI EWCGLAKL+ +  VRKAVRCSVAVVTDFGEES+AL+VVL YVKSQ
Sbjct:    1 MKALDRGSAKLCILSNDCDNAEYKKLVQALCAENKVHLIMADHGTEIGEWCGLAKLNGDNTVRKAVRCSVAVVTDFGEESAALDVVLKYVKSQ 93
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BLAST of mRNA_D-dudresnayi_contig9921.28734.1 vs. uniprot
Match: A0A812WN01_SYMMI (40S ribosomal protein S12 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WN01_SYMMI)

HSP 1 Score: 139 bits (351), Expect = 1.330e-40
Identity = 67/99 (67.68%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:    1 IKRCVKALDAGKARLCILAKDCDNEEYKKLVQALCAESGVHLIMADAGTEISEWCGLAKLDAEGNVRKAVRCSVAVVTDFGEESSALNVVLNYVKSQKE 297
            I  C KALD   ARLC LAKDCD+EEY +L+QALC ESGVHLIM D+G EI EWCGLAKL+ +G  RK VR S AV+T++GEE+ ALNVVL YV+SQ+E
Sbjct:   40 IHECAKALDRRAARLCCLAKDCDHEEYVRLIQALCDESGVHLIMVDSGKEIGEWCGLAKLNEDGTSRKVVRTSCAVITEYGEETPALNVVLKYVQSQQE 138
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BLAST of mRNA_D-dudresnayi_contig9921.28734.1 vs. uniprot
Match: A0A7S2KYS2_9STRA (40S ribosomal protein S12 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KYS2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.690e-39
Identity = 65/99 (65.66%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:    1 IKRCVKALDAGKARLCILAKDCDNEEYKKLVQALCAESGVHLIMADAGTEISEWCGLAKLDAEGNVRKAVRCSVAVVTDFGEESSALNVVLNYVKSQKE 297
            +  C KALD   ARLC LAKDC+NEEYKKL++AL AE  V LIM D+G E+  WCGLAKLD  G V+KAVRCS AV+T+FGEES ALNV+L+Y+K+Q E
Sbjct:   41 LHECAKALDRQSARLCCLAKDCENEEYKKLIRALSAEGKVSLIMVDSGKELGAWCGLAKLDENGEVKKAVRCSCAVITEFGEESRALNVLLDYLKNQTE 139
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BLAST of mRNA_D-dudresnayi_contig9921.28734.1 vs. uniprot
Match: K0T7T2_THAOC (40S ribosomal protein S12 n=2 Tax=Thalassiosira TaxID=35127 RepID=K0T7T2_THAOC)

HSP 1 Score: 132 bits (333), Expect = 8.180e-38
Identity = 61/99 (61.62%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:    1 IKRCVKALDAGKARLCILAKDCDNEEYKKLVQALCAESGVHLIMADAGTEISEWCGLAKLDAEGNVRKAVRCSVAVVTDFGEESSALNVVLNYVKSQKE 297
            +  C KALD   ARLC LAKDC+NEEYKKL++ALCAE  V +IM D+G ++  WCGLAKLDA+G V+KAVR S AV+TDFGEE+ AL V+L+Y++ Q +
Sbjct:   43 LHECAKALDRRSARLCCLAKDCENEEYKKLIRALCAEGEVSVIMVDSGKDLGAWCGLAKLDADGEVKKAVRTSCAVITDFGEETRALTVLLDYLQKQSD 141
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BLAST of mRNA_D-dudresnayi_contig9921.28734.1 vs. uniprot
Match: A0A7S2LXQ0_9STRA (40S ribosomal protein S12 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LXQ0_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.640e-37
Identity = 61/99 (61.62%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:    1 IKRCVKALDAGKARLCILAKDCDNEEYKKLVQALCAESGVHLIMADAGTEISEWCGLAKLDAEGNVRKAVRCSVAVVTDFGEESSALNVVLNYVKSQKE 297
            +  C KALD   ARLC LAKDC+NEEYKKL++ALCAE  V +IM D+G ++  WCGLAKLDA+G V+KAVR S AV+TDFGEE+ AL+V+L+Y++ Q +
Sbjct:   81 LHECAKALDRRSARLCCLAKDCENEEYKKLIRALCAEGEVSVIMVDSGKDLGAWCGLAKLDADGEVKKAVRTSCAVITDFGEETRALSVLLDYLQKQAD 179
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BLAST of mRNA_D-dudresnayi_contig9921.28734.1 vs. uniprot
Match: A0A7S2HNH8_9STRA (40S ribosomal protein S12 n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2HNH8_9STRA)

HSP 1 Score: 130 bits (328), Expect = 5.000e-37
Identity = 61/99 (61.62%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    1 IKRCVKALDAGKARLCILAKDCDNEEYKKLVQALCAESGVHLIMADAGTEISEWCGLAKLDAEGNVRKAVRCSVAVVTDFGEESSALNVVLNYVKSQKE 297
            +  C KALD   ARLC LAKDC+NEEYKKL++ALCAE  V +IM D+G ++  WCGLAKLD EG V+KAVR S AV+TDFGEE+ AL V+L+Y++ Q +
Sbjct:   43 LHECAKALDRKTARLCCLAKDCENEEYKKLIRALCAEGEVSVIMVDSGKDLGAWCGLAKLDDEGGVKKAVRTSCAVITDFGEETRALTVLLDYLQKQAD 141
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BLAST of mRNA_D-dudresnayi_contig9921.28734.1 vs. uniprot
Match: A0A7S1UV16_9STRA (40S ribosomal protein S12 n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UV16_9STRA)

HSP 1 Score: 130 bits (328), Expect = 5.300e-37
Identity = 58/99 (58.59%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:    1 IKRCVKALDAGKARLCILAKDCDNEEYKKLVQALCAESGVHLIMADAGTEISEWCGLAKLDAEGNVRKAVRCSVAVVTDFGEESSALNVVLNYVKSQKE 297
            +  C KALD   ARLC LAKDC+NEEYKKL++ALCAE  VH++M D+G ++  WCGLAKL  +G+V+KAVR S AV+TDFGEE+ AL ++L+Y++ Q +
Sbjct:   44 LHECAKALDRRSARLCCLAKDCENEEYKKLIRALCAEGEVHVVMVDSGKDLGAWCGLAKLQDDGSVKKAVRTSCAVITDFGEETRALTILLDYLQKQAD 142
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BLAST of mRNA_D-dudresnayi_contig9921.28734.1 vs. uniprot
Match: A0A7S2CVX4_9STRA (40S ribosomal protein S12 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVX4_9STRA)

HSP 1 Score: 130 bits (328), Expect = 5.300e-37
Identity = 59/97 (60.82%), Postives = 72/97 (74.23%), Query Frame = 1 
Query:    1 IKRCVKALDAGKARLCILAKDCDNEEYKKLVQALCAESGVHLIMADAGTEISEWCGLAKLDAEGNVRKAVRCSVAVVTDFGEESSALNVVLNYVKSQ 291
            +  C KALD   A+LC LAKDCDN EY KLV+ALC E GV+L+M D G ++ EWCGL K+D EG   K VRCS AV+T+FGEES ALNV+L ++K Q
Sbjct:   47 LHECAKALDKHTAKLCCLAKDCDNPEYTKLVRALCEEGGVNLVMVDTGKQLGEWCGLCKIDEEGEATKVVRCSCAVITEFGEESQALNVLLEFLKDQ 143
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BLAST of mRNA_D-dudresnayi_contig9921.28734.1 vs. uniprot
Match: A0A7S0JLW6_9EUKA (40S ribosomal protein S12 (Fragment) n=1 Tax=Minchinia chitonis TaxID=262233 RepID=A0A7S0JLW6_9EUKA)

HSP 1 Score: 129 bits (324), Expect = 1.260e-36
Identity = 60/99 (60.61%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    1 IKRCVKALDAGKARLCILAKDCDNEEYKKLVQALCAESGVHLIMADAGTEISEWCGLAKLDAEGNVRKAVRCSVAVVTDFGEESSALNVVLNYVKSQKE 297
            +  C KALD   ARLC LAKDC+NEEYKKL++AL +E  V+LIM D+G ++  WCGLAKL  EG V+KAVR S AV+T+FGEE+ ALN++L+Y+K Q E
Sbjct:   28 LHECAKALDKRTARLCCLAKDCENEEYKKLIRALASEGDVNLIMVDSGKDLGAWCGLAKLTEEGEVKKAVRTSCAVITEFGEETHALNILLDYLKKQAE 126
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9921.28734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3HHT5_9STRA3.220e-5694.7440S ribosomal protein S12 n=3 Tax=Eukaryota TaxID=... [more]
A0A482T4E4_9ARCH6.750e-4679.57Ribosomal L7Ae/L30e/S12e/Gadd45 family protein n=1... [more]
A0A812WN01_SYMMI1.330e-4067.6840S ribosomal protein S12 n=1 Tax=Symbiodinium mic... [more]
A0A7S2KYS2_9STRA1.690e-3965.6640S ribosomal protein S12 n=1 Tax=Leptocylindrus d... [more]
K0T7T2_THAOC8.180e-3861.6240S ribosomal protein S12 n=2 Tax=Thalassiosira Ta... [more]
A0A7S2LXQ0_9STRA2.640e-3761.6240S ribosomal protein S12 n=1 Tax=Skeletonema mari... [more]
A0A7S2HNH8_9STRA5.000e-3761.6240S ribosomal protein S12 n=2 Tax=Lithodesmiaceae ... [more]
A0A7S1UV16_9STRA5.300e-3758.5940S ribosomal protein S12 n=1 Tax=Grammatophora oc... [more]
A0A7S2CVX4_9STRA5.300e-3760.8240S ribosomal protein S12 n=1 Tax=Florenciella par... [more]
A0A7S0JLW6_9EUKA1.260e-3660.6140S ribosomal protein S12 (Fragment) n=1 Tax=Minch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9921contigD-dudresnayi_contig9921:10960..11259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue6.4e-29
Seed eggNOG ortholog35128.Thaps37628
Preferred nameRPS12
KEGG koko:K02951,ko:K12581
KEGG Pathwayko03010,ko03018,map03010,map03018
KEGG ModuleM00177
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0010035,GO:0010038,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0042221,GO:0042788,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046686,GO:0050896,GO:1990904
EggNOG free text desc.Belongs to the eukaryotic ribosomal protein eS12 family
EggNOG OGs2XCR7@2836,COG1358@1,KOG3406@2759
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03019
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930953.6302607-CDS-D-dudresnayi_contig9921:10959..112591622930953.6302607-CDS-D-dudresnayi_contig9921:10959..11259Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9921 10960..11259 -
1690557978.1956618-CDS-D-dudresnayi_contig9921:10959..112591690557978.1956618-CDS-D-dudresnayi_contig9921:10959..11259Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9921 10960..11259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9921.28734.1prot_D-dudresnayi_contig9921.28734.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9921 10960..11259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9921.28734.1

>prot_D-dudresnayi_contig9921.28734.1 ID=prot_D-dudresnayi_contig9921.28734.1|Name=mRNA_D-dudresnayi_contig9921.28734.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=100bp
IKRCVKALDAGKARLCILAKDCDNEEYKKLVQALCAESGVHLIMADAGTE
ISEWCGLAKLDAEGNVRKAVRCSVAVVTDFGEESSALNVVLNYVKSQKE*
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mRNA from alignment at D-dudresnayi_contig9921:10960..11259-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9921.28734.1 ID=mRNA_D-dudresnayi_contig9921.28734.1|Name=mRNA_D-dudresnayi_contig9921.28734.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=300bp|location=Sequence derived from alignment at D-dudresnayi_contig9921:10960..11259- (Desmarestia dudresnayi DdudBR16 monoicous)
ATTAAAAGGTGCGTGAAGGCTCTGGATGCCGGCAAGGCTCGCCTGTGCAT
CCTGGCCAAGGACTGCGACAACGAGGAGTACAAGAAGCTGGTTCAGGCTC
TGTGCGCCGAGAGTGGTGTCCACCTGATCATGGCTGATGCCGGCACTGAG
ATCAGTGAGTGGTGCGGTCTTGCCAAGCTCGATGCCGAGGGCAACGTGCG
CAAGGCAGTCCGCTGCTCTGTCGCTGTTGTCACTGACTTCGGTGAGGAGA
GCTCTGCCCTGAACGTGGTCCTCAACTACGTGAAGTCTCAGAAGGAGTAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9921:10960..11259-

>mRNA_D-dudresnayi_contig9921.28734.1 ID=mRNA_D-dudresnayi_contig9921.28734.1|Name=mRNA_D-dudresnayi_contig9921.28734.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at D-dudresnayi_contig9921:10960..11259- (Desmarestia dudresnayi DdudBR16 monoicous)
ATTAAAAGGTGCGTGAAGGCTCTGGATGCCGGCAAGGCTCGCCTGTGCAT
CCTGGCCAAGGACTGCGACAACGAGGAGTACAAGAAGCTGGTTCAGGCTC
TGTGCGCCGAGAGTGGTGTCCACCTGATCATGGCTGATGCCGGCACTGAG
ATCAGTGAGTGGTGCGGTCTTGCCAAGCTCGATGCCGAGGGCAACGTGCG
CAAGGCAGTCCGCTGCTCTGTCGCTGTTGTCACTGACTTCGGTGAGGAGA
GCTCTGCCCTGAACGTGGTCCTCAACTACGTGAAGTCTCAGAAGGAGTAA
ATTAAAAGGTGCGTGAAGGCTCTGGATGCCGGCAAGGCTCGCCTGTGCAT
CCTGGCCAAGGACTGCGACAACGAGGAGTACAAGAAGCTGGTTCAGGCTC
TGTGCGCCGAGAGTGGTGTCCACCTGATCATGGCTGATGCCGGCACTGAG
ATCAGTGAGTGGTGCGGTCTTGCCAAGCTCGATGCCGAGGGCAACGTGCG
CAAGGCAGTCCGCTGCTCTGTCGCTGTTGTCACTGACTTCGGTGAGGAGA
GCTCTGCCCTGAACGTGGTCCTCAACTACGTGAAGTCTCAGAAGGAGTAA
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