mRNA_D-dudresnayi_contig9888.28703.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9888.28703.1
Unique NamemRNA_D-dudresnayi_contig9888.28703.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9888.28703.1 vs. uniprot
Match: A0A6H5KYY0_9PHAE (Response regulatory domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY0_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 3.900e-51
Identity = 100/148 (67.57%), Postives = 110/148 (74.32%), Query Frame = 1 
Query:  283 LWRSTSSEVPGAGDSSASV-GNDT--TPAWVWVDVGVAWAIAPATGGSLQLSLWGSIAPSCLFVTIALGYGLRAEEVTIDGSDVGNVGMLVTALAVCGLSILAVGYQVLWEQARDTRTLIMLEDRMAAEDERRRKACFSELLLRHLVT 717
            +WR  SSE   AG S + V G D   TPAW WVDVG+AWAIAPA GGSLQLSLWGSI PS L VT+AL YGLRAEEV +DG       +L  +L VCGLS LAVGYQVLWEQARD RTL+ LED +  ED RRR+A FSELLLRHLVT
Sbjct:    1 MWRGMSSEAESAGTSGSGVEGGDAAGTPAWAWVDVGIAWAIAPAAGGSLQLSLWGSIVPSWLCVTVALAYGLRAEEVALDGDGADGALILFASLVVCGLSALAVGYQVLWEQARDARTLMALEDSIDFEDHRRRQAAFSELLLRHLVT 148
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9888.28703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYY0_9PHAE3.900e-5167.57Response regulatory domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9888contigD-dudresnayi_contig9888:6369..10865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionMembrane-localised response receiver domain protein
Ec32 orthologEc-24_003450.1
Exons4
Model size717
Cds size717
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9888.28703.1prot_D-dudresnayi_contig9888.28703.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9888 6369..10865 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930949.3987358-CDS-D-dudresnayi_contig9888:6368..65721622930949.3987358-CDS-D-dudresnayi_contig9888:6368..6572Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9888 6369..6572 +
1690557976.6528325-CDS-D-dudresnayi_contig9888:6368..65721690557976.6528325-CDS-D-dudresnayi_contig9888:6368..6572Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9888 6369..6572 +
1622930949.4455514-CDS-D-dudresnayi_contig9888:7849..81461622930949.4455514-CDS-D-dudresnayi_contig9888:7849..8146Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9888 7850..8146 +
1690557976.6611059-CDS-D-dudresnayi_contig9888:7849..81461690557976.6611059-CDS-D-dudresnayi_contig9888:7849..8146Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9888 7850..8146 +
1622930949.4761362-CDS-D-dudresnayi_contig9888:9559..96521622930949.4761362-CDS-D-dudresnayi_contig9888:9559..9652Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9888 9560..9652 +
1690557976.6703198-CDS-D-dudresnayi_contig9888:9559..96521690557976.6703198-CDS-D-dudresnayi_contig9888:9559..9652Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9888 9560..9652 +
1622930949.4977925-CDS-D-dudresnayi_contig9888:10742..108651622930949.4977925-CDS-D-dudresnayi_contig9888:10742..10865Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9888 10743..10865 +
1690557976.678659-CDS-D-dudresnayi_contig9888:10742..108651690557976.678659-CDS-D-dudresnayi_contig9888:10742..10865Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9888 10743..10865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9888.28703.1

>prot_D-dudresnayi_contig9888.28703.1 ID=prot_D-dudresnayi_contig9888.28703.1|Name=mRNA_D-dudresnayi_contig9888.28703.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=239bp
LQTIARGKQDRLAASRRVALSRVVSACLIVTTAASCVLLQRSGLVDLAWG
RTSVAAAALLWFWSTFTEAFKKDTGRVCNGMCLLCFVCWSFSHILWRSTS
SEVPGAGDSSASVGNDTTPAWVWVDVGVAWAIAPATGGSLQLSLWGSIAP
SCLFVTIALGYGLRAEEVTIDGSDVGNVGMLVTALAVCGLSILAVGYQVL
WEQARDTRTLIMLEDRMAAEDERRRKACFSELLLRHLVT
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mRNA from alignment at D-dudresnayi_contig9888:6369..10865+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9888.28703.1 ID=mRNA_D-dudresnayi_contig9888.28703.1|Name=mRNA_D-dudresnayi_contig9888.28703.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4497bp|location=Sequence derived from alignment at D-dudresnayi_contig9888:6369..10865+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTGCAGACCATTGCAAGGGGCAAGCAGGACCGACTGGCAGCTAGCCGGCG
CGTGGCCCTCTCGAGGGTGGTGTCCGCTTGTCTCATCGTCACGACCGCGG
CGTCGTGTGTGTTGCTCCAAAGGAGCGGCCTCGTTGACCTGGCCTGGGGA
AGGACGAGCGTGGCGGCCGCGGCGTTGCTGTGGTTCTGGAGCACCTTTAC
CGAGGTATACTTCCAAAATTTATCTTTTTGCTGATGTGTCTGCGTATACG
AACTGCTGCTACTGCGGCTTTCTCGAGCGTCAGCCTCCCCCCCCCCAGTG
TATCAGAGGTATACCAGTAGTCGGGAGCACGAGGAAGAAGATGCGCAGAT
ACGCCCTTGTGGTAAGGCCGAAGAGAGTAGAACTCACATACTGGGAGATG
CGTGGGAGGAAGAGATGATGAAAATAGACGGGTGTGACACGGAGAAGTTT
GGTACACTAATACTAGAGCGAGAAAACGATTGCTATCCCAGGAGATAGAT
GGTGGCCACAAAAGGCAAAACAGCAAGGGTATATGATAAGCAAAAGGTTT
TTTATGTCATGTAAGAAAAAAACGTAAAGAATGCCCAAATGTTTGTCTCT
CTATTAGGATAGGGAACGATGCTCTATCTCGGTAGAGATGCGTGGTCAAT
GGTCAAATGACTGAGGCAAGCAACAATGAGTACCTCCCCCCATCTCCTCC
TTTGGGGTTGGCGTCGGTTGGCAATGACGCGGTAAAACACGCCACTCGCT
GCGTGAGGTAGACAACCACGGTGCCCATTTTTTTTGTCTTTGTTTGGTTG
GCGGTTACCATGACTGGTTGTCGAGTTAGATCATATCGTGCGTGGTGGAA
AACCTGAACTCCGCGCAAGTGGGATGATTATCACGCAGTGTATATACGGT
AAGGCACCCACGAGGCAGTTACATAGCATCCCCATGGCTGTCTCTGGAAG
TGGCCACACCAGACAACAAACTATTCATTCGAAGCGTGTCATCCGTATGC
AAGAAAGTACGCACAAGGTGCCGAAGTCCGCCTCACAAGCGGTTCTTAGT
AGGATGTAGCTCACCCTTCATGCGAGTCGCCGCGCATCTCATGGCGCTTC
GCGTTTGGTGCACGCGATGTCTGCCTGGTAGGTGAAAACCCGACGTGCTC
CGTCCCGGCATTGTAGGGATGCGAGGGAATATGGCCATACGACTACGGCC
ATGCATGAAATGAGCACACACACCCCTCCCCTAGGAGATAGATGGTGGCC
ACAAAATACGAATAAGGAAGGGGATAAGATAAGCCTGTGTTTTACGTAAG
ATATGGCAAAAGCGTAAATAGCGCCCAATTTTTGGACGCGTCTCTGTTAG
GAGTAGGAACGGCGCTCCGTCTCGAAAGGGATAACGCGTGGTCAATGGTC
AAATGGCTACGGAAAGCAACAAATGAGTACCCCCTCCCCCCCACACACAC
ACATCAATCACATCAATCTCATCAATCACAGGCGTTCAAGAAAGATACGG
GACGTGTCTGCAACGGCATGTGCCTGTTGTGTTTTGTTTGCTGGTCATTT
TCGCACATTTTATGGCGTTCGACGTCATCAGAAGTGCCCGGGGCTGGGGA
TAGCAGCGCTTCTGTGGGCAACGATACAACTCCCGCGTGGGTGTGGGTGG
ATGTGGGAGTCGCGTGGGCGATAGCTCCGGCGACGGGGGGGAGTCTGCAG
TTGAGCTTGTGGGGGTCGATCGCGCCGAGTTGTCTGTTCGTTACCATCGC
GCTGGGGTACGGGTTACGGGCGGAAGAGGTAAGAATCGCAAATAATCCCT
GTAATACTATTTTTTTAATGCATCTTTTAGTTTTTTCTACGTATACGAGC
TGGGCCAGCCTGAGGTCCCACATTCCTTTGGTAGATCATGACTGTTGCAG
TTTTACGAATTAGCCCGATGTAAGCATATCACTGTGAACTGCAGAACAAC
GTGCCGGTCAGACCCTTTGCCACGAATCGATTGGCCACGTTTTGGCGATG
ACCATATTATACTGCACTCAGTATAGGACACACCACAAAACGCGACATTT
CGACAAAAAAATGTTTGTGAAAAACGCGGCGGAATTAGAGTCTCGTACAA
CCCTAGTACAGTAGTAGTAGTAGTACAGAGTACACAGTATTGATCCTCTC
TGACGATACGCACGCAGAAGAGCCCATATGGTGATGCTGACTTGCACCCT
TACTGCGAGCCACTGTACGGTGCACGAGTGCTGCTTGTCACACTACATCA
TGCTTGCGCGAACGAGGCGCGGCCAATCTATTCGCGACCTGTCGTCCTTT
GTAAATCGTTTTACAGGACTCTCCATCTCCAGTCCTACGGGATCGCAAAT
CCACACCATAAAAAAATGGAATGCTCGGGTCAATTTTAAGAATTTTGAGC
CAACCTTTTGGACGAACCTAGAAGACCTCACTAAAAAAATTCTTGACTGC
GCGTTCCAAAGATTTGTTTTTTTTTCGTTGAGATAGGGGAATTTTATTTT
TTTTCCTATTTTTTTACTGGCTCTATTTCGCCGATTTTTTCTTTTTTGTT
GCTTTGGAACGCTCAGGTACGGCCCGCGTAATGATGATATACATCTTGTG
CCCAAATTTCAGCTCCTACCTCCTAAAACTCAGCCGAGCATTCCTGATCA
AGAAAAAAAAAAGAGCTCCAGGCTGGCCCAGCTCGTACTTGTAGAGGGTA
CTGATATCTTCATCCCTGGCGTTTTTTTTTTGTGATGTTACCCATAAATT
TGATATCCCAGTCCTCCTCACAGGATCCCTTCTACTCATCGCTCAGCGCG
CCTGTCTGAGCCAGCCGTGGTCGCAGGTGCCTATCATACCCTTCTCCCCC
CCCCGGTACATATACTTCGTACCTTTGTTTTTGTTGCGTACAGGGTTTCA
GCATTCCCTTACCTCGTCAACCTTCATCGAATTGTGCTTGCTCGCGCTCT
CGCACTTTGTGCGACGGAAGATGGCACATAAAAGGACCATTTTGTTTCCA
CCGGGAATCGAACCCCGAACTTCCGCCAACAGGGGCGACAATCTAACCAC
TTCGACGGACCACAGCGTCACCCTGTCAGTACATGGCCGTCGATAAAAAC
GACGACAGTTTCCCGGCACGCAAGACACCAATTCGTGGGATATTTTTCGA
CGTGTCTGGCGTACTTTGTGTTCCCTTCACCCACTTTGCAGGTGACAATA
GATGGGAGCGACGTGGGGAACGTTGGGATGTTAGTGACGGCGTTAGCGGT
ATGCGGGTTGTCTATCCTAGCCGTTGGATATCAGGTGAGGTGGAGGGGGG
GTGGGGGAGGGTGTACTCATTTCATGCATGGCCGTAATCGTATGACCATA
GACCCTCGCATCCTTACAATGCCGGGAAGGAGCACGTCGGGGGGGGGGGG
GGGGGGGTCCCCATTTGGGGCTTGCTTTGGGCATTCGGCCATGGACCCCC
CCCCCCTTTCGAGTCGGAGCACTAATTTTCCTCCTNNNNNNNNNNCGCCT
GCTCCCGCGTGGGGGTGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGG
GGCGTACTCATTTGTGGCTTGCTTTAGTCATTAGGCCATTGACCACGCAT
CCCTTTCGAGACGGAGCACTAATGTTCCTCCTACTCCAAATAGAGACACC
TGCAACGTTTGGGCGCTCTTTACGGTATTTCCATATCTTACGTATCATAA
AACGTTTTGCTTATCTTATCCCCTTCCTGTTTTGCCTTTCGTCGCCACCA
TATATCTCCTAGGATAGCGATCGTTTTCTTGCTATTAACTAGTGTACCAA
ACTTCTCCAAGTATATCTATCTCCTATGATAGGCGAGGGGGGGGGCTACA
AAACAATCGTACACTACTCCTACTACTTATAATATCATACGTACAATACT
CCCGTGTTGGTGCGCGATGATGGTAAGGATGAGCGAGCTTTGCGTGGCAG
CGCGGCTCCTCTTCTGTACTGTAGGGTACTGAGATCCGACGGCAAACGCG
AGTGAGCGGACGAGCGCGCGATAAATCCCCGTCACCACCTTGCCGATGTG
TGTCCGGGCTGGCGCGTTTGCCTCCCCAAGACAACGCATAACTTTCATGT
ATATCACTCACACATAACTTGTTGGTGAAATAACCAGGGTCCAGGATGAG
ACAGCGAGGACGTGGGGCCGATCCACATCATTCTGAAAAACCGTAGGAGG
CATAAATATCAGGGGATGGGGAGTAGTTCATTGTGCCTATAATGCCTGGC
CTGAAAATCGAACGCGCACCAAAACCTCAGCAATGAAGATGGCCGCCCCT
TCTTTTGGATGCATTTTTCAAATTATTTTGCGAATTGAATCACTTACTTC
CAAAAGCAACTTTTTCCTTCACAGGTCTTGTGGGAGCAGGCTCGAGATAC
GAGAACGCTTATTATGCTGGAAGACAGGATGGCTGCGGAGGACGAGAGGA
GACGGAAGGCGTGTTTCTCGGAGTTGCTTCTTCGACATCTTGTCACG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9888:6369..10865+

>mRNA_D-dudresnayi_contig9888.28703.1 ID=mRNA_D-dudresnayi_contig9888.28703.1|Name=mRNA_D-dudresnayi_contig9888.28703.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1434bp|location=Sequence derived from alignment at D-dudresnayi_contig9888:6369..10865+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTGCAGACCATTGCAAGGGGCAAGCAGGACCGACTGGCAGCTAGCCGGCG
CGTGGCCCTCTCGAGGGTGGTGTCCGCTTGTCTCATCGTCACGACCGCGG
CGTCGTGTGTGTTGCTCCAAAGGAGCGGCCTCGTTGACCTGGCCTGGGGA
AGGACGAGCGTGGCGGCCGCGGCGTTGCTGTGGTTCTGGAGCACCTTTAC
CGAGCTGCAGACCATTGCAAGGGGCAAGCAGGACCGACTGGCAGCTAGCC
GGCGCGTGGCCCTCTCGAGGGTGGTGTCCGCTTGTCTCATCGTCACGACC
GCGGCGTCGTGTGTGTTGCTCCAAAGGAGCGGCCTCGTTGACCTGGCCTG
GGGAAGGACGAGCGTGGCGGCCGCGGCGTTGCTGTGGTTCTGGAGCACCT
TTACCGAGGCGTTCAAGAAAGATACGGGACGTGTCTGCAACGGCATGTGC
CTGTTGTGTTTTGTTTGCTGGTCATTTTCGCACATTTTATGGCGTTCGAC
GTCATCAGAAGTGCCCGGGGCTGGGGATAGCAGCGCTTCTGTGGGCAACG
ATACAACTCCCGCGTGGGTGTGGGTGGATGTGGGAGTCGCGTGGGCGATA
GCTCCGGCGACGGGGGGGAGTCTGCAGTTGAGCTTGTGGGGGTCGATCGC
GCCGAGTTGTCTGTTCGTTACCATCGCGCTGGGGTACGGGTTACGGGCGG
AAGAGGCGTTCAAGAAAGATACGGGACGTGTCTGCAACGGCATGTGCCTG
TTGTGTTTTGTTTGCTGGTCATTTTCGCACATTTTATGGCGTTCGACGTC
ATCAGAAGTGCCCGGGGCTGGGGATAGCAGCGCTTCTGTGGGCAACGATA
CAACTCCCGCGTGGGTGTGGGTGGATGTGGGAGTCGCGTGGGCGATAGCT
CCGGCGACGGGGGGGAGTCTGCAGTTGAGCTTGTGGGGGTCGATCGCGCC
GAGTTGTCTGTTCGTTACCATCGCGCTGGGGTACGGGTTACGGGCGGAAG
AGGTGACAATAGATGGGAGCGACGTGGGGAACGTTGGGATGTTAGTGACG
GCGTTAGCGGTATGCGGGTTGTCTATCCTAGCCGTTGGATATCAGGTGAC
AATAGATGGGAGCGACGTGGGGAACGTTGGGATGTTAGTGACGGCGTTAG
CGGTATGCGGGTTGTCTATCCTAGCCGTTGGATATCAGGTCTTGTGGGAG
CAGGCTCGAGATACGAGAACGCTTATTATGCTGGAAGACAGGATGGCTGC
GGAGGACGAGAGGAGACGGAAGGCGTGTTTCTCGGAGTTGCTTCTTCGAC
ATCTTGTCACGGTCTTGTGGGAGCAGGCTCGAGATACGAGAACGCTTATT
ATGCTGGAAGACAGGATGGCTGCGGAGGACGAGAGGAGACGGAAGGCGTG
TTTCTCGGAGTTGCTTCTTCGACATCTTGTCACG
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