mRNA_D-dudresnayi_contig9886.28700.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9886.28700.1
Unique NamemRNA_D-dudresnayi_contig9886.28700.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9886.28700.1 vs. uniprot
Match: A0A2G2E1Y8_9FLAO (Acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Fluviicola sp. TaxID=1917219 RepID=A0A2G2E1Y8_9FLAO)

HSP 1 Score: 53.9 bits (128), Expect = 2.570e-5
Identity = 38/130 (29.23%), Postives = 64/130 (49.23%), Query Frame = 1 
Query:    1 GTVQNWSIKVGDSFRKGDRLCDIVLPVATIGIDAKSDGIMANIVVGRYETAPADSPIALYALSKDYYMGYLAESMQNASDAAKMEIVTAAEEEEKPHKPDAADLMRVIRQMTQQ--GRIESGMFAKKLQS 384
            G V +W+ KVGD   +G+ L +I    AT+  ++  DG++ +I VG+ ETAP ++ +A+     +     LAE+        K E     EE     KP AA +   ++    +  GR+ +   A+K+ S
Sbjct:   17 GVVADWNKKVGDEVSEGELLAEIETDKATMEFESFYDGVLLHIGVGKGETAPVNTLLAIIGDKGEDIEKILAEAKNPTKAEVKEENAPEKEEAAPVVKPTAASVPTPVQAAVTESNGRVFASPLARKMAS 146
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9886.28700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2G2E1Y8_9FLAO2.570e-529.23Acetyltransferase component of pyruvate dehydrogen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9886contigD-dudresnayi_contig9886:9957..10574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog4787.PITG_19668T0
EggNOG free text desc.Biotin-requiring enzyme
EggNOG OGs3QBHA@4776,COG0508@1,KOG0557@2759
COG Functional cat.C
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size528
Cds size528
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930949.0857708-CDS-D-dudresnayi_contig9886:9956..103171622930949.0857708-CDS-D-dudresnayi_contig9886:9956..10317Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9886 9957..10317 +
1690557976.5619783-CDS-D-dudresnayi_contig9886:9956..103171690557976.5619783-CDS-D-dudresnayi_contig9886:9956..10317Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9886 9957..10317 +
1622930949.1040025-CDS-D-dudresnayi_contig9886:10407..105741622930949.1040025-CDS-D-dudresnayi_contig9886:10407..10574Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9886 10408..10574 +
1690557976.5738974-CDS-D-dudresnayi_contig9886:10407..105741690557976.5738974-CDS-D-dudresnayi_contig9886:10407..10574Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9886 10408..10574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9886.28700.1prot_D-dudresnayi_contig9886.28700.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9886 9957..10574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9886.28700.1

>prot_D-dudresnayi_contig9886.28700.1 ID=prot_D-dudresnayi_contig9886.28700.1|Name=mRNA_D-dudresnayi_contig9886.28700.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=176bp
GTVQNWSIKVGDSFRKGDRLCDIVLPVATIGIDAKSDGIMANIVVGRYET
APADSPIALYALSKDYYMGYLAESMQNASDAAKMEIVTAAEEEEKPHKPD
AADLMRVIRQMTQQGRIESGMFAKKLQSLARKGNKELLAAFEASYEGASF
NQETFDEAFFLENAKDIIDEDDHSD*
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mRNA from alignment at D-dudresnayi_contig9886:9957..10574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9886.28700.1 ID=mRNA_D-dudresnayi_contig9886.28700.1|Name=mRNA_D-dudresnayi_contig9886.28700.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=618bp|location=Sequence derived from alignment at D-dudresnayi_contig9886:9957..10574+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGAACCGTACAAAATTGGTCTATTAAAGTTGGTGATAGTTTTCGTAAAGG
AGATCGTCTCTGTGACATTGTATTACCTGTTGCAACCATTGGTATCGATG
CTAAATCCGATGGAATAATGGCAAATATTGTAGTGGGTCGGTATGAAACA
GCACCAGCCGACTCTCCTATCGCTCTATATGCACTCAGCAAGGATTACTA
TATGGGATATCTGGCTGAGTCGATGCAAAACGCCTCTGATGCAGCCAAAA
TGGAAATCGTTACTGCTGCGGAGGAGGAAGAGAAGCCCCACAAACCCGAT
GCAGCCGACCTGATGCGCGTGATCCGACAAATGACTCAACAAGGACGCAT
AGAAAGTGGCAGTGGTAAGTTTATTCTGTTATTTACAGCTAATTATGTCA
ATTGTTATAATATATGTGTGCTACCGTATGTGAAACACTACTACCGTTCA
GTGTTTGCGAAGAAACTGCAGTCCCTCGCCCGGAAGGGGAACAAGGAGCT
GCTGGCTGCCTTCGAGGCGTCCTACGAAGGGGCGAGTTTTAACCAGGAGA
CATTCGACGAGGCTTTCTTTCTAGAGAACGCCAAGGACATCATCGACGAG
GACGACCACAGTGACTGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9886:9957..10574+

>mRNA_D-dudresnayi_contig9886.28700.1 ID=mRNA_D-dudresnayi_contig9886.28700.1|Name=mRNA_D-dudresnayi_contig9886.28700.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at D-dudresnayi_contig9886:9957..10574+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGAACCGTACAAAATTGGTCTATTAAAGTTGGTGATAGTTTTCGTAAAGG
AGATCGTCTCTGTGACATTGTATTACCTGTTGCAACCATTGGTATCGATG
CTAAATCCGATGGAATAATGGCAAATATTGTAGTGGGTCGGTATGAAACA
GCACCAGCCGACTCTCCTATCGCTCTATATGCACTCAGCAAGGATTACTA
TATGGGATATCTGGCTGAGTCGATGCAAAACGCCTCTGATGCAGCCAAAA
TGGAAATCGTTACTGCTGCGGAGGAGGAAGAGAAGCCCCACAAACCCGAT
GCAGCCGACCTGATGCGCGTGATCCGACAAATGACTCAACAAGGACGCAT
AGAAAGTGGCAGGAACCGTACAAAATTGGTCTATTAAAGTTGGTGATAGT
TTTCGTAAAGGAGATCGTCTCTGTGACATTGTATTACCTGTTGCAACCAT
TGGTATCGATGCTAAATCCGATGGAATAATGGCAAATATTGTAGTGGGTC
GGTATGAAACAGCACCAGCCGACTCTCCTATCGCTCTATATGCACTCAGC
AAGGATTACTATATGGGATATCTGGCTGAGTCGATGCAAAACGCCTCTGA
TGCAGCCAAAATGGAAATCGTTACTGCTGCGGAGGAGGAAGAGAAGCCCC
ACAAACCCGATGCAGCCGACCTGATGCGCGTGATCCGACAAATGACTCAA
CAAGGACGCATAGAAAGTGGCATGTTTGCGAAGAAACTGCAGTCCCTCGC
CCGGAAGGGGAACAAGGAGCTGCTGGCTGCCTTCGAGGCGTCCTACGAAG
GGGCGAGTTTTAACCAGGAGACATTCGACGAGGCTTTCTTTCTAGAGAAC
GCCAAGGACATCATCGACGAGGACGACCACAGTGACTGATGTTTGCGAAG
AAACTGCAGTCCCTCGCCCGGAAGGGGAACAAGGAGCTGCTGGCTGCCTT
CGAGGCGTCCTACGAAGGGGCGAGTTTTAACCAGGAGACATTCGACGAGG
CTTTCTTTCTAGAGAACGCCAAGGACATCATCGACGAGGACGACCACAGT
GACTGA
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