mRNA_D-dudresnayi_contig9854.28662.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9854.28662.1
Unique NamemRNA_D-dudresnayi_contig9854.28662.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9854.28662.1 vs. uniprot
Match: A0A6H5KJU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU0_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.060e-44
Identity = 72/81 (88.89%), Postives = 76/81 (93.83%), Query Frame = 1
Query:    1 SSYLRQVDKFNEQNVSAFLTAGGTKLMLLHDGRADDAVRSFFMEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKFL 243
            ++YLR VDKFNEQNVSAFLTAGG KLMLLHDGR DDA+R+FF EVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARK L
Sbjct:   60 ATYLRLVDKFNEQNVSAFLTAGGAKLMLLHDGRTDDAIRTFFAEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKLL 140          
BLAST of mRNA_D-dudresnayi_contig9854.28662.1 vs. uniprot
Match: A0A835Z2S7_9STRA (Sedlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2S7_9STRA)

HSP 1 Score: 117 bits (292), Expect = 6.170e-32
Identity = 53/79 (67.09%), Postives = 68/79 (86.08%), Query Frame = 1
Query:    7 YLRQVDKFNEQNVSAFLTAGGTKLMLLHDGRADDAVRSFFMEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKFL 243
            YLR VDKFNEQ VSA+LTA G +LMLLHDGR+++ + SFF +VHELYVK ++NPFY +D+P+ISP FD+RV+ALA K+L
Sbjct:   61 YLRVVDKFNEQIVSAYLTAAGVRLMLLHDGRSEEGIGSFFKDVHELYVKHMLNPFYRFDTPIISPEFDERVRALAVKWL 139          
BLAST of mRNA_D-dudresnayi_contig9854.28662.1 vs. uniprot
Match: A0A7S2US08_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US08_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.730e-30
Identity = 47/78 (60.26%), Postives = 67/78 (85.90%), Query Frame = 1
Query:    7 YLRQVDKFNEQNVSAFLTAGGTKLMLLHDGRADDAVRSFFMEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKF 240
            YL+ +DKFN+ ++S ++TA G + +LLHDGR+DDA+++FF +V+ELYV+LLMNPFY YDS V+SPAFD RV+ LAR++
Sbjct:   59 YLKTIDKFNDMSISGWITAQGIRFLLLHDGRSDDAIKNFFSDVYELYVRLLMNPFYKYDSQVLSPAFDHRVRILARRY 136          
BLAST of mRNA_D-dudresnayi_contig9854.28662.1 vs. uniprot
Match: A0A7S0FIJ0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FIJ0_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.050e-29
Identity = 49/79 (62.03%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    7 YLRQVDKFNEQNVSAFLTAGGTKLMLLHDGRADDAVRSFFMEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKFL 243
            YL+ VDK N Q VS FLTAG  K MLLH G+ +D++++FF +V+ELYVKLL+NPFYAYD+P+ S AFD RV+A+AR++L
Sbjct:   56 YLKVVDKVNHQQVSTFLTAGNVKFMLLHGGKNEDSIKNFFSDVYELYVKLLLNPFYAYDTPITSKAFDTRVRAIARRYL 134          
BLAST of mRNA_D-dudresnayi_contig9854.28662.1 vs. uniprot
Match: H3G6S7_PHYRM (Uncharacterized protein n=25 Tax=Peronosporaceae TaxID=4777 RepID=H3G6S7_PHYRM)

HSP 1 Score: 110 bits (275), Expect = 1.880e-29
Identity = 51/78 (65.38%), Postives = 63/78 (80.77%), Query Frame = 1
Query:   10 LRQVDKFNEQNVSAFLTAGGTKLMLLHDGRADDAVRSFFMEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKFL 243
            L+ VD+FN+Q VSAF+TA G K +LLH+ R DD V++FF EVHELYVKLLMNPFY YD+P+ S  FD RVK LAR++L
Sbjct:   54 LKVVDRFNDQLVSAFVTASGVKFLLLHETRNDDTVKAFFHEVHELYVKLLMNPFYEYDTPISSEVFDARVKTLARRYL 131          
BLAST of mRNA_D-dudresnayi_contig9854.28662.1 vs. uniprot
Match: A0A7S0TIK8_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TIK8_HEMAN)

HSP 1 Score: 110 bits (274), Expect = 3.160e-29
Identity = 50/81 (61.73%), Postives = 69/81 (85.19%), Query Frame = 1
Query:    1 SSYLRQVDKFNEQNVSAFLTAGGTKLMLLHDGRADDAVRSFFMEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKFL 243
            S +L+ VDKFN++ +SA++TA   KLMLLHDG+++DAVRSFF EVH+LYVK+L+NPF   D+P+ SPAFD RV+A+A+K+L
Sbjct:   57 SMFLKSVDKFNDRVISAYVTASHIKLMLLHDGKSEDAVRSFFTEVHDLYVKVLLNPFCDKDAPIPSPAFDARVRAVAKKWL 137          
BLAST of mRNA_D-dudresnayi_contig9854.28662.1 vs. uniprot
Match: A0A7R9WLH9_9STRA (Trafficking protein particle complex subunit n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WLH9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.010e-28
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    1 SSYLRQVDKFNEQNVSAFLTAGGTKLMLLHDGRADDAVRSFFMEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKFL 243
            S YLR VDK N Q VSAF TAG  K MLLH G++DD +R+FF EV+ELYVK+ MNPFY YD+P+ S  FD+RV+++AR++L
Sbjct:   60 SMYLRVVDKVNHQQVSAFQTAGNIKFMLLHAGKSDDTIRNFFNEVYELYVKVSMNPFYHYDTPITSKEFDKRVRSVARRYL 140          
BLAST of mRNA_D-dudresnayi_contig9854.28662.1 vs. uniprot
Match: A0A068RWT6_9FUNG (Trafficking protein particle complex subunit 2 n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RWT6_9FUNG)

HSP 1 Score: 108 bits (271), Expect = 1.100e-28
Identity = 47/79 (59.49%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    7 YLRQVDKFNEQNVSAFLTAGGTKLMLLHDGRADDAVRSFFMEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKFL 243
            YL+ VD+FNEQ VSAF+TA   K MLLHD +++D++R+FF +V+ELY+K+LMNPFY  +SP+ +P FD RVK +AR+FL
Sbjct:   66 YLKSVDRFNEQYVSAFVTANNVKFMLLHDQKSEDSIRNFFNDVYELYIKILMNPFYEKNSPIANPQFDNRVKMIARRFL 144          
BLAST of mRNA_D-dudresnayi_contig9854.28662.1 vs. uniprot
Match: A0A7S1VQ48_9STRA (Trafficking protein particle complex subunit n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VQ48_9STRA)

HSP 1 Score: 107 bits (267), Expect = 3.760e-28
Identity = 47/79 (59.49%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    7 YLRQVDKFNEQNVSAFLTAGGTKLMLLHDGRADDAVRSFFMEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKFL 243
            YL+ VDK N+Q VS FLTAG  K MLLH GR++D++R+FF +V+ELYVKL MNPFY YD+P+ + +FD RV+ +AR++L
Sbjct:   59 YLKVVDKVNQQQVSTFLTAGNIKFMLLHSGRSEDSIRNFFNDVYELYVKLSMNPFYRYDTPITAKSFDTRVRQVARRYL 137          
BLAST of mRNA_D-dudresnayi_contig9854.28662.1 vs. uniprot
Match: A0A1Z5K0Y6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0Y6_FISSO)

HSP 1 Score: 107 bits (267), Expect = 4.320e-28
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 1
Query:    7 YLRQVDKFNEQNVSAFLTAGGTKLMLLHD---GRADDAVRSFFMEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKFL 243
            YL+ VDK N+Q VS FLTAG  KLMLLH+    ++++A+R FF +V+ELYVK  MNPFYAYD+P+IS AFD RV+AL RK+L
Sbjct:   61 YLKIVDKVNQQQVSTFLTAGNIKLMLLHNVHQNKSEEAIRQFFQDVYELYVKFSMNPFYAYDTPIISEAFDTRVRALGRKYL 142          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9854.28662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJU0_9PHAE1.060e-4488.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z2S7_9STRA6.170e-3267.09Sedlin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S2US08_9STRA2.730e-3060.26Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0FIJ0_9STRA1.050e-2962.03Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
H3G6S7_PHYRM1.880e-2965.38Uncharacterized protein n=25 Tax=Peronosporaceae T... [more]
A0A7S0TIK8_HEMAN3.160e-2961.73Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7R9WLH9_9STRA1.010e-2861.73Trafficking protein particle complex subunit n=1 T... [more]
A0A068RWT6_9FUNG1.100e-2859.49Trafficking protein particle complex subunit 2 n=2... [more]
A0A7S1VQ48_9STRA3.760e-2859.49Trafficking protein particle complex subunit n=1 T... [more]
A0A1Z5K0Y6_FISSO4.320e-2862.20Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9854contigD-dudresnayi_contig9854:9792..11020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue4.8e-22
Seed eggNOG ortholog164328.Phyra39722
Preferred nameTRAPPC2
KEGG koko:K20301
GOsGO:0000003,GO:0000166,GO:0001101,GO:0001501,GO:0002376,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005783,GO:0005793,GO:0005794,GO:0005801,GO:0005829,GO:0006355,GO:0006403,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007276,GO:0007283,GO:0008104,GO:0008134,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009627,GO:0009719,GO:0009725,GO:0009733,GO:0009751,GO:0009814,GO:0009862,GO:0009863,GO:0009889,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0012505,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016050,GO:0016192,GO:0017016,GO:0017112,GO:0017137,GO:0019219,GO:0019222,GO:0019899,GO:0019953,GO:0022414,GO:0022607,GO:0023052,GO:0030008,GO:0031267,GO:0031323,GO:0031326,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032991,GO:0033036,GO:0033227,GO:0034613,GO:0035690,GO:0036094,GO:0042221,GO:0042493,GO:0042742,GO:0042886,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044325,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045087,GO:0045184,GO:0046677,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048471,GO:0048609,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061024,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0071229,GO:0071236,GO:0071310,GO:0071407,GO:0071446,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0090114,GO:0097159,GO:0097708,GO:0098542,GO:0098772,GO:0099023,GO:1901265,GO:1901363,GO:1901700,GO:1901701,GO:1903506,GO:1990070,GO:1990071,GO:1990072,GO:2000112,GO:2001141
EggNOG free text desc.Sedlin, N-terminal conserved region
EggNOG OGs3QFNQ@4776,COG5603@1,KOG3487@2759
COG Functional cat.U
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSedlin
Ec32 orthologEc-19_000860.1
Exons2
Model size246
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930944.0041738-CDS-D-dudresnayi_contig9854:9791..98841622930944.0041738-CDS-D-dudresnayi_contig9854:9791..9884Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9854 9792..9884 -
1690557974.7517602-CDS-D-dudresnayi_contig9854:9791..98841690557974.7517602-CDS-D-dudresnayi_contig9854:9791..9884Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9854 9792..9884 -
1622930944.0254161-CDS-D-dudresnayi_contig9854:10867..110201622930944.0254161-CDS-D-dudresnayi_contig9854:10867..11020Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9854 10868..11020 -
1690557974.7638454-CDS-D-dudresnayi_contig9854:10867..110201690557974.7638454-CDS-D-dudresnayi_contig9854:10867..11020Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9854 10868..11020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9854.28662.1prot_D-dudresnayi_contig9854.28662.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9854 9792..11020 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9854.28662.1

>prot_D-dudresnayi_contig9854.28662.1 ID=prot_D-dudresnayi_contig9854.28662.1|Name=mRNA_D-dudresnayi_contig9854.28662.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=82bp
SSYLRQVDKFNEQNVSAFLTAGGTKLMLLHDGRADDAVRSFFMEVHELYV
KLLMNPFYAYDSPVISPAFDQRVKALARKFL*
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mRNA from alignment at D-dudresnayi_contig9854:9792..11020-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9854.28662.1 ID=mRNA_D-dudresnayi_contig9854.28662.1|Name=mRNA_D-dudresnayi_contig9854.28662.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1229bp|location=Sequence derived from alignment at D-dudresnayi_contig9854:9792..11020- (Desmarestia dudresnayi DdudBR16 monoicous)
AGCAGCTATTTGCGGCAGGTTGACAAGTTCAACGAGCAGAACGTGTCCGC TTTCCTGACGGCTGGCGGGACGAAGTTGATGCTTCTGCACGACGGCAGAG CAGATGACGCCGTTCGAAGTTTTTTCATGGAGGTCCACGAGCTGTACGTA AAGGTAACGGTACAGCAGTACAGATTTTACGTTGCGAAAACGTGCATATG ACGGCATGTGTGTATCCGAGGCAATCCGGTTGGTACATTCAGCGTGTATC GTAGCAGAGTATTTCACACCCTGGACAACTCAAATAATTTCTTCAACTAG AATACAGTGTAGTATCATAGTTGGTATTTAGGTATTTGCAAATATAGGAT AACTCCTCAAGATTCAGATGCGTTAGTTTGATTGGTTGCAAGGAACTAGT TCCTTTTTGACTCTGACACGGTGGTTGATTTGCATCCTACGAGTATTAGT TTCTGAGTATTCCGACCCAGCAGTTGCTTGCGACCAATTTAGTTGTGTTT TTTCGTTGTCCGGGGTGTGCAGTACTGTGCGGTGCGGCAGCGGGTGTTTC TTCATAATCGTTTGGTGACGGAGTGCAATGTTGTCTTGATAGAAAGTAGG CTCGGGGCTTTTCTGGCTTGAAGAAGCCGGCGCCTTTGTTTTGTGTAGTG TTTGGTGCAGCAGGGCTTGTGATTGCTCGGAGTAATGACGACGTTGAACC TGGGATCGATCATGTACCCCTGGTGTCTGCATGGGTAACGCTTAGGCGAA GGCGTCAAGCATGGATGCGTGCAGGTGCACATGGCATGCGGCGGATAGGC ATCCGAGCTGTAAGGAGGGTAGACTTTAGCACCTTTGATCTCGCGATAAA TTATTTTTGTATCGTTTTGACACTGATAGCCCCTCGACTCTTATACTGCG TTTGTGGTGTGGATACACTATACTTATCCGCCCCGGTAGATTGTTCGGGT TTAAGCTGTACTTTTTTTTGGCGGGTTTCCTCATTTGCGTTCCTCATCGC ATGTCGTGCGTTGTAGTGTCACGTGTGCTCCTCTCTAACCCGGTCCCGCT GCTTTTTTTTTTCTTCATTTGACGCCTTTCTGTCCGCCCTCTTCGCCTTT TGTGTGTGTGTTGTTTTTCTTCCGCGTGCTCTGCAGCTGCTGATGAATCC TTTCTACGCATACGACTCCCCTGTCATCTCTCCGGCTTTTGACCAACGAG TCAAGGCCTTGGCGAGAAAGTTTTTGTAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9854:9792..11020-

>mRNA_D-dudresnayi_contig9854.28662.1 ID=mRNA_D-dudresnayi_contig9854.28662.1|Name=mRNA_D-dudresnayi_contig9854.28662.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at D-dudresnayi_contig9854:9792..11020- (Desmarestia dudresnayi DdudBR16 monoicous)
AGCAGCTATTTGCGGCAGGTTGACAAGTTCAACGAGCAGAACGTGTCCGC
TTTCCTGACGGCTGGCGGGACGAAGTTGATGCTTCTGCACGACGGCAGAG
CAGATGACGCCGTTCGAAGTTTTTTCATGGAGGTCCACGAGCTGTACGTA
AAGAGCAGCTATTTGCGGCAGGTTGACAAGTTCAACGAGCAGAACGTGTC
CGCTTTCCTGACGGCTGGCGGGACGAAGTTGATGCTTCTGCACGACGGCA
GAGCAGATGACGCCGTTCGAAGTTTTTTCATGGAGGTCCACGAGCTGTAC
GTAAAGCTGCTGATGAATCCTTTCTACGCATACGACTCCCCTGTCATCTC
TCCGGCTTTTGACCAACGAGTCAAGGCCTTGGCGAGAAAGTTTTTGTAAC
TGCTGATGAATCCTTTCTACGCATACGACTCCCCTGTCATCTCTCCGGCT
TTTGACCAACGAGTCAAGGCCTTGGCGAGAAAGTTTTTGTAA
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