mRNA_D-dudresnayi_contig9852.28661.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9852.28661.1
Unique NamemRNA_D-dudresnayi_contig9852.28661.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9852.28661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9852contigD-dudresnayi_contig9852:4921..6168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930943.9329221-CDS-D-dudresnayi_contig9852:4920..49441622930943.9329221-CDS-D-dudresnayi_contig9852:4920..4944Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9852 4921..4944 -
1690557974.7296147-CDS-D-dudresnayi_contig9852:4920..49441690557974.7296147-CDS-D-dudresnayi_contig9852:4920..4944Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9852 4921..4944 -
1622930943.953135-CDS-D-dudresnayi_contig9852:5904..61681622930943.953135-CDS-D-dudresnayi_contig9852:5904..6168Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9852 5905..6168 -
1690557974.7387514-CDS-D-dudresnayi_contig9852:5904..61681690557974.7387514-CDS-D-dudresnayi_contig9852:5904..6168Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9852 5905..6168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9852.28661.1prot_D-dudresnayi_contig9852.28661.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9852 4921..6168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9852.28661.1

>prot_D-dudresnayi_contig9852.28661.1 ID=prot_D-dudresnayi_contig9852.28661.1|Name=mRNA_D-dudresnayi_contig9852.28661.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=96bp
MKAQAPSAGVSKTSVENFAACSSVLRLHFGETNEMPVPFRASRGTNWRRM
CTTRTLWWTISLHGWLLQQSKSCRNGRPMSFLGKLPRKTMIRRLYD
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mRNA from alignment at D-dudresnayi_contig9852:4921..6168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9852.28661.1 ID=mRNA_D-dudresnayi_contig9852.28661.1|Name=mRNA_D-dudresnayi_contig9852.28661.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1248bp|location=Sequence derived from alignment at D-dudresnayi_contig9852:4921..6168- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAAGGCACAGGCTCCCTCCGCCGGTGTGAGCAAAACCTCAGTGGAAAA
TTTTGCAGCTTGTTCCAGTGTACTACGCTTGCACTTCGGTGAAACAAACG
AAATGCCGGTACCATTTCGCGCATCGAGAGGAACAAATTGGCGGCGAATG
TGTACAACGAGAACGCTGTGGTGGACAATTTCTTTGCATGGGTGGTTGCT
ACAGCAAAGCAAGAGCTGCCGAAATGGGCGACCCATGAGCTTTTTGGGAA
AGCTACCGAGAAAAGTGAGTAACCTCTGTTCCCTCTGTACGCAGTATGTC
GTGGTGCACCTTATATATGTACACACAGAGACTCTGTTCTATACTATATA
GTAGTAGTCTATAGTACTACAAGACTACAATAATATGTTGTTGTCCTACT
ACTGTCTGTTGTATGCTACAATAATATGTTGTCCTACTACTGTCTGTTGT
ATGATACAACAGTAGTAGTAGTACTGTTGTTAATGTCATGCTTTGAGGTA
CGTATACCACTACTGTTGTACTACGAGTACAGGGAGAGATCGAGCTGTTG
TTGTCCTGTTGTTGCAGCATCTGTCATGAAACCTGTAGGTACTGCTCTTG
TTACTCGAAACACCAACATCCTTCCCACACAGTGCCCACCGCGAGTAGTC
CGGTTCCCTGTATCAATTATCGTGCTGTGTGTCGTCCAATGCCCGTACCA
CTACTGTTGTTGCTGGGAGGAAGCCAGCTTGGATGACTGCAACCGTATGT
GGTGTCCTAATAATGAGATACTAATAATGAGTAGCATTGGTACGTGCCGG
CGCCATGAACTTGCAAGTAGAACTCTGGGGTACCAATCCGCCCGAAACCC
GGTGGTCGAACCGCACACAGGCATGCGAAGATATACCACCACCGTGCTTC
TCGTAATCAAGCGAGCACTAAGCGTGTTTCAAGTTTTTGTTTTTTTCCGT
TCCATTTATTCTCTTCGCCATACTCGTATTTTTTCTCCAGCTCCATCTCT
CTTCGTAACTCAGATCCGGGGTCGCATGCAATAGTACGCGCTCCTCCCCC
CTTCCCATTGCGGTAATTGCCTACATTTTTATCGCGAGAGGGGCGCAGCA
TATAAATTTTTCCCTCTTGGAGTTTCATCGAATTGTGCTTATTCGCGCTC
GCGTTTGTACAATATGCTATTATCATTTGTCCACAAGCAGACCTGCCTTT
CTCTAACTGCTGTCACACTCACAGACCATGATCAGAAGGCTGTACGAC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9852:4921..6168-

>mRNA_D-dudresnayi_contig9852.28661.1 ID=mRNA_D-dudresnayi_contig9852.28661.1|Name=mRNA_D-dudresnayi_contig9852.28661.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at D-dudresnayi_contig9852:4921..6168- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAAGGCACAGGCTCCCTCCGCCGGTGTGAGCAAAACCTCAGTGGAAAA
TTTTGCAGCTTGTTCCAGTGTACTACGCTTGCACTTCGGTGAAACAAACG
AAATGCCGGTACCATTTCGCGCATCGAGAGGAACAAATTGGCGGCGAATG
TGTACAACGAGAACGCTGTGGTGGACAATTTCTTTGCATGGGTGGTTGCT
ACAGCAAAGCAAGAGCTGCCGAAATGGGCGACCCATGAGCTTTTTGGGAA
AGCTACCGAGAAAAATGAAGGCACAGGCTCCCTCCGCCGGTGTGAGCAAA
ACCTCAGTGGAAAATTTTGCAGCTTGTTCCAGTGTACTACGCTTGCACTT
CGGTGAAACAAACGAAATGCCGGTACCATTTCGCGCATCGAGAGGAACAA
ATTGGCGGCGAATGTGTACAACGAGAACGCTGTGGTGGACAATTTCTTTG
CATGGGTGGTTGCTACAGCAAAGCAAGAGCTGCCGAAATGGGCGACCCAT
GAGCTTTTTGGGAAAGCTACCGAGAAAAACCATGATCAGAAGGCTGTACG
ACACCATGATCAGAAGGCTGTACGAC
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