mRNA_D-dudresnayi_contig9794.28599.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9794.28599.1
Unique NamemRNA_D-dudresnayi_contig9794.28599.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9794.28599.1 vs. uniprot
Match: A0A7S3HRP4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HRP4_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.070e-37
Identity = 56/73 (76.71%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:    1 LNQYFQSCFTNWKVYKGKRTPQQVLKLQAIYKQAIYGDNPDVPPLRMESAEGLKWNAWHKLSGTPKEMAKRRF 219
            LNQYFQSCFTNWKVYKGKRTP+QV++LQA+YKQAIYGDNPD  P +++S EG+KW AWH+L+GTP+ MAKRRF
Sbjct:   36 LNQYFQSCFTNWKVYKGKRTPKQVVRLQALYKQAIYGDNPDPMPQQIDSKEGVKWMAWHRLTGTPQVMAKRRF 108
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BLAST of mRNA_D-dudresnayi_contig9794.28599.1 vs. uniprot
Match: A0A4Q5X7Z1_9DELT (ACB domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A4Q5X7Z1_9DELT)

HSP 1 Score: 127 bits (319), Expect = 2.290e-32
Identity = 55/80 (68.75%), Postives = 66/80 (82.50%), Query Frame = 1 
Query:    1 LNQYFQSCFTNWKVYKGKRTPQQVLKLQAIYKQAIYGDNPDVPPLRMESAEGLKWNAWHKLSGTPKEMAKRRFITFLAEI 240
            LNQYFQS + NWKVY G RTP+QVLKLQ++YKQA+YGDN D+PP  +++ EG KW AW KL G PK+MAKRRFITF+ EI
Sbjct:   40 LNQYFQSVYNNWKVYTGPRTPKQVLKLQSLYKQAVYGDNSDLPPENLQTTEGHKWEAWRKLKGMPKDMAKRRFITFVMEI 119
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BLAST of mRNA_D-dudresnayi_contig9794.28599.1 vs. uniprot
Match: A0A0L0HII9_SPIPD (ACB domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HII9_SPIPD)

HSP 1 Score: 54.7 bits (130), Expect = 5.910e-8
Identity = 23/63 (36.51%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   52 KRTPQQVLKLQAIYKQAIYGDNPDVPPLRMESAEGLKWNAWHKLSGTPKEMAKRRFITFLAEI 240
            K +  ++L+L A++KQ+I GDN    P   +     KW+AW KL GT KE A+++++  + E+
Sbjct:   25 KPSNDELLRLYALFKQSIVGDNETTKPGMFDLQGKAKWDAWTKLKGTSKEEAQKQYVALVKEL 87
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BLAST of mRNA_D-dudresnayi_contig9794.28599.1 vs. uniprot
Match: A0A4S2MY20_9PEZI (Acyl-CoA binding protein n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2MY20_9PEZI)

HSP 1 Score: 51.2 bits (121), Expect = 2.470e-6
Identity = 23/59 (38.98%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:   52 KRTPQQVLKLQAIYKQAIYGDNPDVPPLRMESAEGLKWNAWHKLSGTPKEMAKRRFITF 228
            + T ++ LKL A +KQA++GDN +  P R++     K NAW +L GT  E A+  ++ F
Sbjct:   34 RTTDEEALKLYAHFKQALFGDNEEDAPGRLDFVGQAKHNAWLELKGTAPESAEAEYLQF 92
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BLAST of mRNA_D-dudresnayi_contig9794.28599.1 vs. uniprot
Match: A0A4P9WFA7_9FUNG (Acyl-CoA-binding protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WFA7_9FUNG)

HSP 1 Score: 49.3 bits (116), Expect = 7.810e-6
Identity = 25/79 (31.65%), Postives = 39/79 (49.37%), Query Frame = 1 
Query:    4 NQYFQSCFTNWKVYKGKRTPQQVLKLQAIYKQAIYGDNPDVPPLRMESAEGLKWNAWHKLSGTPKEMAKRRFITFLAEI 240
            N  F     + K    K +  ++LKL A++KQ I GDN    P   +     KW+AW  + GT KE A+ ++I  +  +
Sbjct:    9 NAAFAQAAIDVKALTYKPSNDELLKLYALFKQGIVGDNETARPGMFDLQGKAKWDAWTAVKGTAKEAAQAQYIELVESL 87
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BLAST of mRNA_D-dudresnayi_contig9794.28599.1 vs. uniprot
Match: A0A225WYC9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WYC9_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.780e-5
Identity = 22/50 (44.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:   73 LKLQAIYKQAIYGDNPDVPPLRMESAEGLKWNAWHKLSGTPKEMAKRRFI 222
            L+L  ++KQA  GD     P      E  KW++WHKLSGT K+ A+RR++
Sbjct:   24 LQLYGLFKQATVGDCRASAPSAFRPVERAKWSSWHKLSGTSKQEAQRRYM 73
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9794.28599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S3HRP4_9STRA1.070e-3776.71Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4Q5X7Z1_9DELT2.290e-3268.75ACB domain-containing protein n=1 Tax=Myxococcales... [more]
A0A0L0HII9_SPIPD5.910e-836.51ACB domain-containing protein n=2 Tax=Spizellomyce... [more]
A0A4S2MY20_9PEZI2.470e-638.98Acyl-CoA binding protein n=1 Tax=Ascodesmis nigric... [more]
A0A4P9WFA7_9FUNG7.810e-631.65Acyl-CoA-binding protein n=1 Tax=Blyttiomyces heli... [more]
A0A225WYC9_9STRA1.780e-544.00Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9794contigD-dudresnayi_contig9794:6927..7166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.4067888-CDS-D-dudresnayi_contig9794:6926..71661622930936.4067888-CDS-D-dudresnayi_contig9794:6926..7166Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9794 6927..7166 -
1690557971.8667276-CDS-D-dudresnayi_contig9794:6926..71661690557971.8667276-CDS-D-dudresnayi_contig9794:6926..7166Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9794 6927..7166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9794.28599.1prot_D-dudresnayi_contig9794.28599.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9794 6927..7166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9794.28599.1

>prot_D-dudresnayi_contig9794.28599.1 ID=prot_D-dudresnayi_contig9794.28599.1|Name=mRNA_D-dudresnayi_contig9794.28599.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=80bp
LNQYFQSCFTNWKVYKGKRTPQQVLKLQAIYKQAIYGDNPDVPPLRMESA
EGLKWNAWHKLSGTPKEMAKRRFITFLAEI
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mRNA from alignment at D-dudresnayi_contig9794:6927..7166-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9794.28599.1 ID=mRNA_D-dudresnayi_contig9794.28599.1|Name=mRNA_D-dudresnayi_contig9794.28599.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at D-dudresnayi_contig9794:6927..7166- (Desmarestia dudresnayi DdudBR16 monoicous)
CTTAATCAGTACTTCCAATCATGTTTTACAAATTGGAAAGTATATAAAGG
TAAAAGAACACCACAACAAGTTCTTAAATTGCAAGCCATCTACAAGCAAG
CTATTTATGGAGATAACCCAGATGTTCCTCCTTTGCGTATGGAATCTGCT
GAAGGACTTAAATGGAATGCTTGGCATAAACTTTCTGGAACCCCAAAAGA
GATGGCGAAGCGACGTTTTATTACGTTTCTAGCGGAAATC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9794:6927..7166-

>mRNA_D-dudresnayi_contig9794.28599.1 ID=mRNA_D-dudresnayi_contig9794.28599.1|Name=mRNA_D-dudresnayi_contig9794.28599.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at D-dudresnayi_contig9794:6927..7166- (Desmarestia dudresnayi DdudBR16 monoicous)
CTTAATCAGTACTTCCAATCATGTTTTACAAATTGGAAAGTATATAAAGG
TAAAAGAACACCACAACAAGTTCTTAAATTGCAAGCCATCTACAAGCAAG
CTATTTATGGAGATAACCCAGATGTTCCTCCTTTGCGTATGGAATCTGCT
GAAGGACTTAAATGGAATGCTTGGCATAAACTTTCTGGAACCCCAAAAGA
GATGGCGAAGCGACGTTTTATTACGTTTCTAGCGGAAATCCTTAATCAGT
ACTTCCAATCATGTTTTACAAATTGGAAAGTATATAAAGGTAAAAGAACA
CCACAACAAGTTCTTAAATTGCAAGCCATCTACAAGCAAGCTATTTATGG
AGATAACCCAGATGTTCCTCCTTTGCGTATGGAATCTGCTGAAGGACTTA
AATGGAATGCTTGGCATAAACTTTCTGGAACCCCAAAAGAGATGGCGAAG
CGACGTTTTATTACGTTTCTAGCGGAAATC
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