mRNA_D-dudresnayi_contig9782.28591.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9782.28591.1
Unique NamemRNA_D-dudresnayi_contig9782.28591.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig9782.28591.1 vs. uniprot
Match: A0A7S3M384_9STRA (Hypoxanthine phosphoribosyltransferase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M384_9STRA)

HSP 1 Score: 282 bits (721), Expect = 7.980e-94
Identity = 138/158 (87.34%), Postives = 144/158 (91.14%), Query Frame = 1 
Query:    1 IIIGGSTFFGDLCNAMKKFHNYAREKYIPYTFDFIRVKSYEGTSSTGNVKISDCDISTLAGKHVLFVEDIIDTGLTMSRLLAYLTDQVKPASIRVASLLEKRTHRSCGFKADYVGFSVPDEFAVGYCLDYNEVYRDLTHIAVINQHGIDKFRDYETNN 474
            ++ GGSTFF DL + MKK HNY REKYIPYTFDFIRVKSYEGTSSTGNVKI + D+STLAGKHVLFVEDIIDTGLTMSRLLAYL DQVKPASIRVASLLEKRT RSCGFKADYVGFSVPDEFAVGYCLDYNEVYRDL HI VINQ GIDKFRDYET +
Sbjct:   19 VLKGGSTFFSDLSSCMKKIHNYNREKYIPYTFDFIRVKSYEGTSSTGNVKIDNIDVSTLAGKHVLFVEDIIDTGLTMSRLLAYLKDQVKPASIRVASLLEKRTDRSCGFKADYVGFSVPDEFAVGYCLDYNEVYRDLPHIGVINQLGIDKFRDYETKD 176
[Close]
BLAST of mRNA_D-dudresnayi_contig9782.28591.1 vs. uniprot
Match: A0A7S2V4H8_9STRA (Hypoxanthine phosphoribosyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4H8_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.530e-65
Identity = 102/153 (66.67%), Postives = 124/153 (81.05%), Query Frame = 1 
Query:    1 IIIGGSTFFGDLCNAMKKFHNYAREKYIPYTFDFIRVKSYEGTSSTGNVKISDCDISTLAGKHVLFVEDIIDTGLTMSRLLAYLTDQVKPASIRVASLLEKRTHRSCGFKADYVGFSVPDEFAVGYCLDYNEVYRDLTHIAVINQHGIDKFRD 459
            ++ GGS FF DL  A++ FH++  + Y+P+TFDFIRVKSYEGT STGNV+IS  D+S L G+HVL VEDIIDTGLTM +L+  +      AS+RVASLLEKRT RSCGFKAD+VGFS+PD+F VGYC+DYNE YRDL HIAVINQ GI+KF+D
Sbjct:  103 VLKGGSIFFSDLLRALRTFHDFNDQSYVPFTFDFIRVKSYEGTESTGNVQISGGDVSRLQGRHVLLVEDIIDTGLTMQKLVPAMKAHGL-ASVRVASLLEKRTERSCGFKADFVGFSIPDKFVVGYCMDYNEWYRDLRHIAVINQAGIEKFKD 254
[Close]
BLAST of mRNA_D-dudresnayi_contig9782.28591.1 vs. uniprot
Match: A0A7S2WI69_9STRA (Hypoxanthine phosphoribosyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WI69_9STRA)

HSP 1 Score: 208 bits (529), Expect = 9.060e-64
Identity = 95/153 (62.09%), Postives = 122/153 (79.74%), Query Frame = 1 
Query:    1 IIIGGSTFFGDLCNAMKKFHNYAREKYIPYTFDFIRVKSYEGTSSTGNVKISDCDISTLAGKHVLFVEDIIDTGLTMSRLLAYLTDQVKPASIRVASLLEKRTHRSCGFKADYVGFSVPDEFAVGYCLDYNEVYRDLTHIAVINQHGIDKFRD 459
            ++ GGS FF DLC+ ++  H ++R+ +IP+TFDFIRVKSYEG  STG V+IS  D+S+L GKH L VED++DTG TM++L A+L +Q K  +IRVASL+EKRT RSCGFKADYVGFS+PDEF +GY +DYNE +RD+ HI VINQ GI+ F D
Sbjct:   77 VLKGGSAFFEDLCSQLRTMHCHSRKTHIPFTFDFIRVKSYEGMESTGKVQISGVDLSSLNGKHCLLVEDLVDTGTTMTQLTAHLREQAKTQTIRVASLIEKRTERSCGFKADYVGFSIPDEFIIGYNMDYNEAFRDMQHICVINQRGIEAFAD 229
[Close]
BLAST of mRNA_D-dudresnayi_contig9782.28591.1 vs. uniprot
Match: A0A2D4BRV0_PYTIN (Hypoxanthine phosphoribosyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRV0_PYTIN)

HSP 1 Score: 201 bits (510), Expect = 2.340e-61
Identity = 95/151 (62.91%), Postives = 119/151 (78.81%), Query Frame = 1 
Query:    1 IIIGGSTFFGDLCNAMKKFHNYAREKYIPYTFDFIRVKSYEGTSSTGNVKISDCDISTLAGKHVLFVEDIIDTGLTMSRLLAYLTDQVKPASIRVASLLEKRTHRSCGFKADYVGFSVPDEFAVGYCLDYNEVYRDLTHIAVINQHGIDKF 453
            ++ GGS FF DL   ++ FH Y +  Y+P+TFDFI+VKSYEGT STGNV+IS  D++   GK +L VEDIIDTG TMS+L+ YL  Q +PAS+RVASLLEKR  +SCGF+ADYVGF +PD+F VGYCLDYNEV+RDL HI VI++ GI K+
Sbjct:   66 VLKGGSAFFHDLVEKLRLFHKYNKCSYVPFTFDFIKVKSYEGTQSTGNVQISGADLAKFKGKDLLLVEDIIDTGKTMSKLVPYL-QQFEPASVRVASLLEKRNPQSCGFQADYVGFQIPDKFVVGYCLDYNEVFRDLDHICVISEPGIAKY 215
[Close]
BLAST of mRNA_D-dudresnayi_contig9782.28591.1 vs. uniprot
Match: A0A3R7KGI1_9STRA (Hypoxanthine phosphoribosyltransferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KGI1_9STRA)

HSP 1 Score: 194 bits (494), Expect = 7.170e-59
Identity = 91/151 (60.26%), Postives = 118/151 (78.15%), Query Frame = 1 
Query:    1 IIIGGSTFFGDLCNAMKKFHNYAREKYIPYTFDFIRVKSYEGTSSTGNVKISDCDISTLAGKHVLFVEDIIDTGLTMSRLLAYLTDQVKPASIRVASLLEKRTHRSCGFKADYVGFSVPDEFAVGYCLDYNEVYRDLTHIAVINQHGIDKF 453
            ++ GGS FF DL   ++ FH Y +  Y+P+TFDFIRVKSY+GT STGNV++S  D++   GK +L VEDIIDTG TMS+L+  L +   PAS+RVASLLEKR  +SCGFKAD+VGF++PD+F VGYCLDY+E++RDL HI VIN+ GI K+
Sbjct:   69 VLKGGSAFFHDLVEKLRLFHKYNKCDYVPFTFDFIRVKSYDGTKSTGNVQVSGADLAKFKGKDLLLVEDIIDTGRTMSKLVPMLREY-DPASVRVASLLEKRNPQSCGFKADFVGFNIPDKFVVGYCLDYDEIFRDLDHICVINEAGIAKY 218
[Close]
BLAST of mRNA_D-dudresnayi_contig9782.28591.1 vs. uniprot
Match: A0A8K1C8V1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8V1_PYTOL)

HSP 1 Score: 194 bits (493), Expect = 9.250e-59
Identity = 91/154 (59.09%), Postives = 118/154 (76.62%), Query Frame = 1 
Query:    1 IIIGGSTFFGDLCNAMKKFHNYAREKYIPYTFDFIRVKSYEGTSSTGNVKISDCDISTLAGKHVLFVEDIIDTGLTMSRLLAYLTDQVKPASIRVASLLEKRTHRSCGFKADYVGFSVPDEFAVGYCLDYNEVYRDLTHIAVINQHGIDKFRDY 462
            ++ GGS FF +L   ++ FH Y +  Y+P+TFDFI+VKSYEGT STGNV+IS  D S   GK +L VEDIIDTG TM++L+ YL  Q +PAS+RVASLLEKR   SCGF+ D+VGFS+PD+F +GYCLDYNE++RDL HI VI++ GI K+  +
Sbjct:   68 VLKGGSAFFHNLVEKLRLFHKYNKCDYVPFTFDFIKVKSYEGTQSTGNVQISGADASKFKGKDLLLVEDIIDTGKTMAKLIPYL-QQYEPASVRVASLLEKRNPASCGFQGDFVGFSIPDKFVIGYCLDYNEMFRDLDHICVISETGIAKYASH 220
[Close]
BLAST of mRNA_D-dudresnayi_contig9782.28591.1 vs. uniprot
Match: A0A484E739_BRELC (Hypoxanthine phosphoribosyltransferase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E739_BRELC)

HSP 1 Score: 192 bits (488), Expect = 8.900e-58
Identity = 90/151 (59.60%), Postives = 117/151 (77.48%), Query Frame = 1 
Query:    1 IIIGGSTFFGDLCNAMKKFHNYAREKYIPYTFDFIRVKSYEGTSSTGNVKISDCDISTLAGKHVLFVEDIIDTGLTMSRLLAYLTDQVKPASIRVASLLEKRTHRSCGFKADYVGFSVPDEFAVGYCLDYNEVYRDLTHIAVINQHGIDKF 453
            ++ GGS FF  L   ++ FH Y    Y+P+TFDFIRVKSYEGT STGNV+IS  D+  L G+H+L VEDIID+G TM++L+  L +Q  PAS+RVASLLEKR   SCGF+AD+VGFS+P++F +GYCLDYN+++RDL HI VIN+ GI K+
Sbjct:   85 VLKGGSAFFHALVEKLRLFHKYNGCDYVPFTFDFIRVKSYEGTKSTGNVQISGIDMDKLKGRHLLLVEDIIDSGKTMTKLVPML-EQYAPASVRVASLLEKRNPASCGFRADFVGFSIPNKFVIGYCLDYNDIFRDLDHICVINEEGIAKY 234
[Close]
BLAST of mRNA_D-dudresnayi_contig9782.28591.1 vs. uniprot
Match: A0A485K7V7_9STRA (Hypoxanthine phosphoribosyltransferase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K7V7_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.060e-57
Identity = 88/151 (58.28%), Postives = 115/151 (76.16%), Query Frame = 1 
Query:    1 IIIGGSTFFGDLCNAMKKFHNYAREKYIPYTFDFIRVKSYEGTSSTGNVKISDCDISTLAGKHVLFVEDIIDTGLTMSRLLAYLTDQVKPASIRVASLLEKRTHRSCGFKADYVGFSVPDEFAVGYCLDYNEVYRDLTHIAVINQHGIDKF 453
            ++ GGS+FF  L + ++ FH Y    Y+P+TFDFI+VKSY+G  STGNV++S  D+S   GKH+L VEDIIDTG TM++L+ YL +  +PAS+RVASLLEKR   SCGF  D+VGFS+PD F +GYCLDYNE++RDL HI +IN  GI K+
Sbjct:   68 VLKGGSSFFHGLIDKLRLFHKYNTCDYVPFTFDFIKVKSYDGLQSTGNVQVSGADLSKFKGKHLLLVEDIIDTGKTMAKLVPYLQES-EPASVRVASLLEKRNPESCGFLGDFVGFSIPDHFVIGYCLDYNEIFRDLDHICIINNAGIAKW 217
[Close]
BLAST of mRNA_D-dudresnayi_contig9782.28591.1 vs. uniprot
Match: A0A5D6XK53_9STRA (Hypoxanthine phosphoribosyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XK53_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.700e-57
Identity = 91/151 (60.26%), Postives = 117/151 (77.48%), Query Frame = 1 
Query:    1 IIIGGSTFFGDLCNAMKKFHNYAREKYIPYTFDFIRVKSYEGTSSTGNVKISDCDISTLAGKHVLFVEDIIDTGLTMSRLLAYLTDQVKPASIRVASLLEKRTHRSCGFKADYVGFSVPDEFAVGYCLDYNEVYRDLTHIAVINQHGIDKF 453
            ++ GGS FF DL   ++ FH Y +  Y+P+TFDFI+VKSY+GT STGNV+IS  D++   GK +L VEDIIDTG TM++L+ YL  Q +PAS++VASLLEKR   SCGF AD+VGFS+PD+F VGYCLDYNE++RDL HI VI+  GI K+
Sbjct:  130 VLKGGSAFFHDLVEKLRLFHKYNKCDYVPFTFDFIKVKSYDGTKSTGNVQISGADLAKFKGKDLLLVEDIIDTGRTMAKLVPYL-QQFEPASVKVASLLEKRNPDSCGFLADFVGFSIPDKFVVGYCLDYNEIFRDLDHICVISDVGIAKY 279
[Close]
BLAST of mRNA_D-dudresnayi_contig9782.28591.1 vs. uniprot
Match: A0A6G0WHP3_9STRA (Hypoxanthine phosphoribosyltransferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHP3_9STRA)

HSP 1 Score: 188 bits (477), Expect = 2.340e-56
Identity = 86/151 (56.95%), Postives = 114/151 (75.50%), Query Frame = 1 
Query:    1 IIIGGSTFFGDLCNAMKKFHNYAREKYIPYTFDFIRVKSYEGTSSTGNVKISDCDISTLAGKHVLFVEDIIDTGLTMSRLLAYLTDQVKPASIRVASLLEKRTHRSCGFKADYVGFSVPDEFAVGYCLDYNEVYRDLTHIAVINQHGIDKF 453
            ++ GGS FF  L   ++ FH Y    Y+P+TFDFI+VKSY+G  STGNV++S  D+S   GKH+L VEDIIDTG TM++L+ YL +  +PAS+RVASLLEKR   SCGF  D+VGFS+PD+F +G+CLDYNE++RDL HI +IN  G+ K+
Sbjct:   67 VLKGGSAFFHILIEKLRLFHKYNTCDYVPFTFDFIKVKSYDGLHSTGNVQVSGADLSKFKGKHLLLVEDIIDTGKTMAKLVPYLQES-EPASVRVASLLEKRNPESCGFLGDFVGFSIPDKFVIGFCLDYNEIFRDLDHICIINDAGVAKW 216
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9782.28591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3M384_9STRA7.980e-9487.34Hypoxanthine phosphoribosyltransferase n=1 Tax=Spu... [more]
A0A7S2V4H8_9STRA1.530e-6566.67Hypoxanthine phosphoribosyltransferase n=1 Tax=Fib... [more]
A0A7S2WI69_9STRA9.060e-6462.09Hypoxanthine phosphoribosyltransferase n=1 Tax=Rhi... [more]
A0A2D4BRV0_PYTIN2.340e-6162.91Hypoxanthine phosphoribosyltransferase n=1 Tax=Pyt... [more]
A0A3R7KGI1_9STRA7.170e-5960.26Hypoxanthine phosphoribosyltransferase n=3 Tax=Phy... [more]
A0A8K1C8V1_PYTOL9.250e-5959.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484E739_BRELC8.900e-5859.60Hypoxanthine phosphoribosyltransferase n=1 Tax=Bre... [more]
A0A485K7V7_9STRA1.060e-5758.28Hypoxanthine phosphoribosyltransferase n=1 Tax=Aph... [more]
A0A5D6XK53_9STRA1.700e-5760.26Hypoxanthine phosphoribosyltransferase n=1 Tax=Pyt... [more]
A0A6G0WHP3_9STRA2.340e-5656.95Hypoxanthine phosphoribosyltransferase n=1 Tax=Aph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9782contigD-dudresnayi_contig9782:10317..11440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.9
Seed ortholog evalue2.7e-44
Seed eggNOG ortholog115417.EPrPW00000024887
Preferred nameHPRT1
KEGG rclassRC00063,RC00122,RC01331
KEGG koko:K00760,ko:K03119
KEGG ReactionR00190,R01132,R01229,R02142,R05320,R08237,R08238,R08245
KEGG Pathwayko00230,ko00430,ko00920,ko00983,ko01100,ko01110,map00230,map00430,map00920,map00983,map01100,map01110
GOsGO:0000003,GO:0000287,GO:0000902,GO:0000904,GO:0001775,GO:0001906,GO:0001909,GO:0001913,GO:0001975,GO:0002054,GO:0002057,GO:0002060,GO:0002250,GO:0002252,GO:0002376,GO:0002443,GO:0002449,GO:0002456,GO:0002460,GO:0003674,GO:0003824,GO:0004422,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006152,GO:0006163,GO:0006164,GO:0006166,GO:0006168,GO:0006178,GO:0006195,GO:0006584,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006955,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0007610,GO:0007625,GO:0007626,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009058,GO:0009112,GO:0009113,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009125,GO:0009126,GO:0009128,GO:0009150,GO:0009154,GO:0009158,GO:0009161,GO:0009163,GO:0009164,GO:0009165,GO:0009166,GO:0009167,GO:0009169,GO:0009259,GO:0009261,GO:0009410,GO:0009636,GO:0009653,GO:0009712,GO:0009719,GO:0009725,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0014075,GO:0016043,GO:0016358,GO:0016740,GO:0016757,GO:0016763,GO:0017144,GO:0018130,GO:0018958,GO:0019222,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019953,GO:0021537,GO:0021544,GO:0021756,GO:0021895,GO:0021953,GO:0021954,GO:0022008,GO:0022414,GO:0022607,GO:0030030,GO:0030154,GO:0030182,GO:0030900,GO:0031175,GO:0031323,GO:0031325,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032869,GO:0032870,GO:0032943,GO:0032989,GO:0032990,GO:0033238,GO:0033240,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0036094,GO:0042053,GO:0042069,GO:0042221,GO:0042278,GO:0042417,GO:0042440,GO:0042451,GO:0042454,GO:0042455,GO:0042493,GO:0042802,GO:0042803,GO:0043094,GO:0043096,GO:0043101,GO:0043103,GO:0043167,GO:0043169,GO:0043174,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043434,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045321,GO:0045915,GO:0045964,GO:0046037,GO:0046038,GO:0046040,GO:0046083,GO:0046084,GO:0046098,GO:0046099,GO:0046100,GO:0046101,GO:0046112,GO:0046128,GO:0046129,GO:0046130,GO:0046148,GO:0046434,GO:0046483,GO:0046649,GO:0046651,GO:0046700,GO:0046872,GO:0046983,GO:0048232,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051704,GO:0051716,GO:0052657,GO:0055086,GO:0060322,GO:0065003,GO:0065007,GO:0070661,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0072523,GO:0080090,GO:0090407,GO:0097159,GO:0097164,GO:0097366,GO:0120036,GO:0120039,GO:1901068,GO:1901069,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901652,GO:1901653,GO:1901657,GO:1901658,GO:1901659,GO:1901698,GO:1901699,GO:1901700,GO:1901701
EggNOG free text desc.Hypoxanthine-guanine phosphoribosyltransferase. Source PGD
EggNOG OGs1MBR8@121069,COG0634@1,KOG3367@2759
EC1.14.11.17,2.4.2.8
COG Functional cat.F
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons5
Model size722
Cds size435
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.3967519-UTR-D-dudresnayi_contig9782:10316..105581622930935.3967519-UTR-D-dudresnayi_contig9782:10316..10558Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9782 10317..10558 -
1690557971.3955748-UTR-D-dudresnayi_contig9782:10316..105581690557971.3955748-UTR-D-dudresnayi_contig9782:10316..10558Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9782 10317..10558 -
1622930935.5128262-UTR-D-dudresnayi_contig9782:11395..114401622930935.5128262-UTR-D-dudresnayi_contig9782:11395..11440Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9782 11396..11440 -
1690557971.4668603-UTR-D-dudresnayi_contig9782:11395..114401690557971.4668603-UTR-D-dudresnayi_contig9782:11395..11440Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9782 11396..11440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.4137814-CDS-D-dudresnayi_contig9782:10558..106761622930935.4137814-CDS-D-dudresnayi_contig9782:10558..10676Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9782 10559..10676 -
1690557971.4111674-CDS-D-dudresnayi_contig9782:10558..106761690557971.4111674-CDS-D-dudresnayi_contig9782:10558..10676Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9782 10559..10676 -
1622930935.4314792-CDS-D-dudresnayi_contig9782:10828..109541622930935.4314792-CDS-D-dudresnayi_contig9782:10828..10954Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9782 10829..10954 -
1690557971.4216008-CDS-D-dudresnayi_contig9782:10828..109541690557971.4216008-CDS-D-dudresnayi_contig9782:10828..10954Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9782 10829..10954 -
1622930935.4486024-CDS-D-dudresnayi_contig9782:11067..111961622930935.4486024-CDS-D-dudresnayi_contig9782:11067..11196Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9782 11068..11196 -
1690557971.432647-CDS-D-dudresnayi_contig9782:11067..111961690557971.432647-CDS-D-dudresnayi_contig9782:11067..11196Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9782 11068..11196 -
1622930935.4690013-CDS-D-dudresnayi_contig9782:11269..113121622930935.4690013-CDS-D-dudresnayi_contig9782:11269..11312Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9782 11270..11312 -
1690557971.4446251-CDS-D-dudresnayi_contig9782:11269..113121690557971.4446251-CDS-D-dudresnayi_contig9782:11269..11312Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9782 11270..11312 -
1622930935.4877834-CDS-D-dudresnayi_contig9782:11376..113951622930935.4877834-CDS-D-dudresnayi_contig9782:11376..11395Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9782 11377..11395 -
1690557971.4559052-CDS-D-dudresnayi_contig9782:11376..113951690557971.4559052-CDS-D-dudresnayi_contig9782:11376..11395Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9782 11377..11395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9782.28591.1prot_D-dudresnayi_contig9782.28591.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9782 10559..11395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9782.28591.1

>prot_D-dudresnayi_contig9782.28591.1 ID=prot_D-dudresnayi_contig9782.28591.1|Name=mRNA_D-dudresnayi_contig9782.28591.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=145bp
MKKFHNYAREKYIPYTFDFIRVKSYEGTSSTGNVKISDCDISTLAGKHVL
FVEDIIDTGLTMSRLLAYLTDQVKPASIRVASLLEKRTHRSCGFKADYVG
FSVPDEFAVGYCLDYNEVYRDLTHIAVINQHGIDKFRDYETNNS*
back to top

mRNA from alignment at D-dudresnayi_contig9782:10317..11440-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9782.28591.1 ID=mRNA_D-dudresnayi_contig9782.28591.1|Name=mRNA_D-dudresnayi_contig9782.28591.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1124bp|location=Sequence derived from alignment at D-dudresnayi_contig9782:10317..11440- (Desmarestia dudresnayi DdudBR16 monoicous)
ATAATAATAGGTGGATCTACTTTCTTTGGTGATCTTTGCAATGCTATGAA
GAAGTTCCATAACTGTAAGATTCTCACAGTTATATGTTTGAAACCAAAGT
TTATTTCTTCTTCTATTTTTTTTCTCAGATGCGCGCGAGAAATATATTCC
TTATACATTCGATTTTATTAGGTAAACACTTTCCTATTCTCTATGCTATC
TTCTGTGTTTATGAGTGTAATCGGTTAACACATATCTACAACAGAGTGAA
GTCGTATGAGGGCACGAGCAGCACTGGGAACGTGAAGATCAGCGACTGCG
ACATCAGCACACTGGCAGGCAAGCACGTGCTTTTCGTGGAGGACATTATT
GACACCGGCCTCACTATGTCTAGGTATGCTATCACTGTAGTTTAGTGTTG
ATATAATAGTCTCACTATCCGAATGCTCTGTGCCCATGGTGTCAATATTG
GCTGATTTTCGTACTGCATACACTATAACTGTGCAGATTATTAGCGTACC
TGACTGACCAGGTGAAGCCCGCCTCTATTCGCGTGGCCTCTCTGCTGGAG
AAGCGCACCCACCGCAGCTGCGGCTTCAAGGCGGACTATGTGGGCTTCTC
TGTGCCTGATGAGTAAGTGCTGTTGAGTGCGTAGTAGTAGTATCAATAAC
GGCTTATTAATCGCACACTAGAGACCGTCTAGAAGACTTTAATAGTACAC
CATAGAGACTGTTCAACTACACATCAAACTTACTTCCACTACTCTCTCCC
TCTGTCTCTCCTAGGTTCGCGGTGGGCTACTGCCTGGACTACAACGAGGT
GTACCGGGACCTCACTCACATCGCAGTCATCAACCAGCACGGCATCGACA
AGTTCAGGGACTACGAGACTAACAACTCCTAAACCGGTCCCTTCCAATCT
CTGCCTTGAAGTTCTCTCTCATACATACCGTGAGCAATCAACTAGTTTTA
TTATAATTTAAAGAAAGCAAGGAGGAGAAAATAATAGGAGTGTGGAAGTA
AAGCAGCCATAGCGTAAATATTGTTTCAAGGATATTGTCGCCGAGAGAGT
AATAAGACGATACATAGTGTGACTATTGGTTGTAACACTACGGGTACGGT
AATAATTACATCGAGAAACGAATT
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig9782:10317..11440-

>mRNA_D-dudresnayi_contig9782.28591.1 ID=mRNA_D-dudresnayi_contig9782.28591.1|Name=mRNA_D-dudresnayi_contig9782.28591.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at D-dudresnayi_contig9782:10317..11440- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAAGAAGTTCCATAACTATGAAGAAGTTCCATAACTATGCGCGCGAGA
AATATATTCCTTATACATTCGATTTTATTAGATGCGCGCGAGAAATATAT
TCCTTATACATTCGATTTTATTAGAGTGAAGTCGTATGAGGGCACGAGCA
GCACTGGGAACGTGAAGATCAGCGACTGCGACATCAGCACACTGGCAGGC
AAGCACGTGCTTTTCGTGGAGGACATTATTGACACCGGCCTCACTATGTC
TAGAGTGAAGTCGTATGAGGGCACGAGCAGCACTGGGAACGTGAAGATCA
GCGACTGCGACATCAGCACACTGGCAGGCAAGCACGTGCTTTTCGTGGAG
GACATTATTGACACCGGCCTCACTATGTCTAGATTATTAGCGTACCTGAC
TGACCAGGTGAAGCCCGCCTCTATTCGCGTGGCCTCTCTGCTGGAGAAGC
GCACCCACCGCAGCTGCGGCTTCAAGGCGGACTATGTGGGCTTCTCTGTG
CCTGATGAATTATTAGCGTACCTGACTGACCAGGTGAAGCCCGCCTCTAT
TCGCGTGGCCTCTCTGCTGGAGAAGCGCACCCACCGCAGCTGCGGCTTCA
AGGCGGACTATGTGGGCTTCTCTGTGCCTGATGAGTTCGCGGTGGGCTAC
TGCCTGGACTACAACGAGGTGTACCGGGACCTCACTCACATCGCAGTCAT
CAACCAGCACGGCATCGACAAGTTCAGGGACTACGAGACTAACAACTCCT
AAGTTCGCGGTGGGCTACTGCCTGGACTACAACGAGGTGTACCGGGACCT
CACTCACATCGCAGTCATCAACCAGCACGGCATCGACAAGTTCAGGGACT
ACGAGACTAACAACTCCTAA
back to top