mRNA_D-dudresnayi_contig978.28584.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig978.28584.1
Unique NamemRNA_D-dudresnayi_contig978.28584.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig978.28584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig978contigD-dudresnayi_contig978:11879..12421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size545
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930934.76593-CDS-D-dudresnayi_contig978:11878..124211622930934.76593-CDS-D-dudresnayi_contig978:11878..12421Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig978 11879..12421 +
1690557971.1858704-CDS-D-dudresnayi_contig978:11878..124211690557971.1858704-CDS-D-dudresnayi_contig978:11878..12421Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig978 11879..12421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig978.28584.1prot_D-dudresnayi_contig978.28584.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig978 11879..12421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig978.28584.1

>prot_D-dudresnayi_contig978.28584.1 ID=prot_D-dudresnayi_contig978.28584.1|Name=mRNA_D-dudresnayi_contig978.28584.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=181bp
GCTKQLSYRIIMVGSKKREFCAQHAKHVTIDVCSKKCASQGGCNKKPPYG
VDGKKPEFCGQHAKQGMVDVSSKNCANQSCTRGTLYGVEGTSNECECCAQ
HVLQAMVGTSKKENTPNRCRISPLLGVQGSETRDICVQYAEAGMVCVGGK
ISFRDRWSGEECRFGRLTVAGGKREGGVETS
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mRNA from alignment at D-dudresnayi_contig978:11879..12421+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig978.28584.1 ID=mRNA_D-dudresnayi_contig978.28584.1|Name=mRNA_D-dudresnayi_contig978.28584.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at D-dudresnayi_contig978:11879..12421+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGTTGCACCAAGCAGCTGTCATACCGCATAATAATGGTAGGCAGCAAGAA
ACGTGAGTTTTGCGCCCAGCACGCGAAGCATGTCACGATCGACGTGTGCA
GCAAGAAATGTGCAAGCCAGGGTGGTTGCAACAAAAAGCCGCCATACGGG
GTAGATGGCAAGAAACCAGAATTCTGCGGTCAGCACGCCAAGCAGGGCAT
GGTCGACGTCAGTAGCAAGAATTGCGCCAATCAGAGTTGCACCCGGGGGA
CGTTATATGGCGTAGAAGGCACCAGCAATGAATGTGAGTGCTGCGCCCAA
CATGTCCTGCAGGCGATGGTCGGCACCTCAAAAAAAGAGAATACCCCCAA
CCGTTGCAGAATATCACCGTTATTAGGCGTGCAAGGAAGCGAGACGCGGG
ATATTTGTGTCCAATATGCGGAGGCGGGTATGGTGTGCGTGGGCGGTAAA
ATATCCTTCAGAGACAGATGGAGCGGCGAGGAGTGTCGCTTTGGTAGACT
CACAGTGGCAGGAGGCAAGCGGGAGGGCGGCGTTGAAACTTCT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig978:11879..12421+

>mRNA_D-dudresnayi_contig978.28584.1 ID=mRNA_D-dudresnayi_contig978.28584.1|Name=mRNA_D-dudresnayi_contig978.28584.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at D-dudresnayi_contig978:11879..12421+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGTTGCACCAAGCAGCTGTCATACCGCATAATAATGGTAGGCAGCAAGAA
ACGTGAGTTTTGCGCCCAGCACGCGAAGCATGTCACGATCGACGTGTGCA
GCAAGAAATGTGCAAGCCAGGGTGGTTGCAACAAAAAGCCGCCATACGGG
GTAGATGGCAAGAAACCAGAATTCTGCGGTCAGCACGCCAAGCAGGGCAT
GGTCGACGTCAGTAGCAAGAATTGCGCCAATCAGAGTTGCACCCGGGGGA
CGTTATATGGCGTAGAAGGCACCAGCAATGAATGTGAGTGCTGCGCCCAA
CATGTCCTGCAGGCGATGGTCGGCACCTCAAAAAAAGAGAATACCCCCAA
CCGTTGCAGAATATCACCGTTATTAGGCGTGCAAGGAAGCGAGACGCGGG
ATATTTGTGTCCAATATGCGGAGGCGGGTATGGTGTGCGTGGGCGGTAAA
ATATCCTTCAGAGACAGATGGAGCGGCGAGGAGTGTCGCTTTGGTAGACT
CACAGTGGCAGGAGGCAAGCGGGAGGGCGGCGTTGAAACTTCTGGTTGCA
CCAAGCAGCTGTCATACCGCATAATAATGGTAGGCAGCAAGAAACGTGAG
TTTTGCGCCCAGCACGCGAAGCATGTCACGATCGACGTGTGCAGCAAGAA
ATGTGCAAGCCAGGGTGGTTGCAACAAAAAGCCGCCATACGGGGTAGATG
GCAAGAAACCAGAATTCTGCGGTCAGCACGCCAAGCAGGGCATGGTCGAC
GTCAGTAGCAAGAATTGCGCCAATCAGAGTTGCACCCGGGGGACGTTATA
TGGCGTAGAAGGCACCAGCAATGAATGTGAGTGCTGCGCCCAACATGTCC
TGCAGGCGATGGTCGGCACCTCAAAAAAAGAGAATACCCCCAACCGTTGC
AGAATATCACCGTTATTAGGCGTGCAAGGAAGCGAGACGCGGGATATTTG
TGTCCAATATGCGGAGGCGGGTATGGTGTGCGTGGGCGGTAAAATATCCT
TCAGAGACAGATGGAGCGGCGAGGAGTGTCGCTTTGGTAGACTCACAGTG
GCAGGAGGCAAGCGGGAGGGCGGCGTTGAAACTTCT
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