mRNA_D-dudresnayi_contig9763.28562.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9763.28562.1
Unique NamemRNA_D-dudresnayi_contig9763.28562.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9763.28562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9763contigD-dudresnayi_contig9763:4568..5130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size563
Cds size561
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930932.3758805-CDS-D-dudresnayi_contig9763:4567..51281622930932.3758805-CDS-D-dudresnayi_contig9763:4567..5128Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9763 4568..5128 +
1690557970.1563761-CDS-D-dudresnayi_contig9763:4567..51281690557970.1563761-CDS-D-dudresnayi_contig9763:4567..5128Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9763 4568..5128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9763.28562.1prot_D-dudresnayi_contig9763.28562.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9763 4568..5128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9763.28562.1

>prot_D-dudresnayi_contig9763.28562.1 ID=prot_D-dudresnayi_contig9763.28562.1|Name=mRNA_D-dudresnayi_contig9763.28562.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=187bp
CLPSSSSTIASTLRRDNVVVRRNSGPVVDHSNGGSTSENGTTRGIDSRDG
GSRVSFGSGSEEGRRRDRRSGRRIMDPTPPRSRRRSPAVRVRARPLVCAA
TPAEVAAAEADRLNNLPRPPRPLRPSRLPPSTVGDGRHRNAISLAITTAK
STMSAMVTTQSTAAKPTGTAASEPSPPRESLTVGLEN
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mRNA from alignment at D-dudresnayi_contig9763:4568..5130+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9763.28562.1 ID=mRNA_D-dudresnayi_contig9763.28562.1|Name=mRNA_D-dudresnayi_contig9763.28562.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=563bp|location=Sequence derived from alignment at D-dudresnayi_contig9763:4568..5130+ (Desmarestia dudresnayi DdudBR16 monoicous)
TGTCTCCCCTCGTCCTCCTCCACGATTGCCTCCACACTTAGGCGCGACAA
TGTGGTCGTTCGCAGGAATTCAGGACCTGTTGTTGACCACAGCAATGGAG
GCAGCACGAGCGAGAACGGAACAACACGCGGCATCGATAGTAGGGACGGT
GGCAGCCGCGTATCATTTGGTTCGGGTTCGGAAGAGGGGAGAAGGCGGGA
CCGCAGGTCTGGGAGGAGGATTATGGACCCCACACCACCGCGGTCCCGCC
GTCGCTCACCTGCAGTACGAGTACGCGCTCGACCTCTTGTTTGCGCAGCT
ACACCGGCGGAAGTTGCAGCGGCAGAAGCGGATAGGCTTAACAACCTCCC
TAGGCCCCCACGACCCCTTCGTCCGTCGAGGCTGCCCCCCAGTACGGTAG
GAGATGGGAGGCATAGGAACGCAATATCTTTGGCGATAACAACAGCAAAA
TCTACAATGTCGGCAATGGTCACAACGCAGTCAACGGCGGCAAAACCGAC
AGGAACGGCAGCAAGTGAACCGTCGCCGCCTAGGGAATCGCTTACAGTCG
GGTTGGAGAACAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9763:4568..5130+

>mRNA_D-dudresnayi_contig9763.28562.1 ID=mRNA_D-dudresnayi_contig9763.28562.1|Name=mRNA_D-dudresnayi_contig9763.28562.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at D-dudresnayi_contig9763:4568..5130+ (Desmarestia dudresnayi DdudBR16 monoicous)
TGTCTCCCCTCGTCCTCCTCCACGATTGCCTCCACACTTAGGCGCGACAA
TGTGGTCGTTCGCAGGAATTCAGGACCTGTTGTTGACCACAGCAATGGAG
GCAGCACGAGCGAGAACGGAACAACACGCGGCATCGATAGTAGGGACGGT
GGCAGCCGCGTATCATTTGGTTCGGGTTCGGAAGAGGGGAGAAGGCGGGA
CCGCAGGTCTGGGAGGAGGATTATGGACCCCACACCACCGCGGTCCCGCC
GTCGCTCACCTGCAGTACGAGTACGCGCTCGACCTCTTGTTTGCGCAGCT
ACACCGGCGGAAGTTGCAGCGGCAGAAGCGGATAGGCTTAACAACCTCCC
TAGGCCCCCACGACCCCTTCGTCCGTCGAGGCTGCCCCCCAGTACGGTAG
GAGATGGGAGGCATAGGAACGCAATATCTTTGGCGATAACAACAGCAAAA
TCTACAATGTCGGCAATGGTCACAACGCAGTCAACGGCGGCAAAACCGAC
AGGAACGGCAGCAAGTGAACCGTCGCCGCCTAGGGAATCGCTTACAGTCG
GGTTGGAGAACTGTCTCCCCTCGTCCTCCTCCACGATTGCCTCCACACTT
AGGCGCGACAATGTGGTCGTTCGCAGGAATTCAGGACCTGTTGTTGACCA
CAGCAATGGAGGCAGCACGAGCGAGAACGGAACAACACGCGGCATCGATA
GTAGGGACGGTGGCAGCCGCGTATCATTTGGTTCGGGTTCGGAAGAGGGG
AGAAGGCGGGACCGCAGGTCTGGGAGGAGGATTATGGACCCCACACCACC
GCGGTCCCGCCGTCGCTCACCTGCAGTACGAGTACGCGCTCGACCTCTTG
TTTGCGCAGCTACACCGGCGGAAGTTGCAGCGGCAGAAGCGGATAGGCTT
AACAACCTCCCTAGGCCCCCACGACCCCTTCGTCCGTCGAGGCTGCCCCC
CAGTACGGTAGGAGATGGGAGGCATAGGAACGCAATATCTTTGGCGATAA
CAACAGCAAAATCTACAATGTCGGCAATGGTCACAACGCAGTCAACGGCG
GCAAAACCGACAGGAACGGCAGCAAGTGAACCGTCGCCGCCTAGGGAATC
GCTTACAGTCGGGTTGGAGAAC
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