mRNA_D-dudresnayi_contig976.28551.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig976.28551.1
Unique NamemRNA_D-dudresnayi_contig976.28551.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig976.28551.1 vs. uniprot
Match: A0A0S2MXX9_9CAUD (HNH homing endonuclease n=1 Tax=Enterococcus phage vB_EfaS_IME198 TaxID=1747287 RepID=A0A0S2MXX9_9CAUD)

HSP 1 Score: 79.0 bits (193), Expect = 2.150e-15
Identity = 50/100 (50.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    4 EVWKVIKQNG-DYFISSIDRVFSLKT---LDYIKPSPDYKGYLKIMVRHRYKKKKNYLVSRLVALAFIKNPDNKPIVDHI-----NGCVENLRWATHPEN 276
            E W+ IK+ G DYF+S+  RV SL     +  IK      GY K+++     K KN  V RLVALAFI NPDNKP V+HI     N CVENL W TH EN
Sbjct:    7 EEWRPIKEFGADYFVSNKGRVMSLVNRLQIRIIKQHLTRGGYYKVVL-----KGKNREVHRLVALAFIDNPDNKPCVNHIDENKENNCVENLEWVTHKEN 101          
BLAST of mRNA_D-dudresnayi_contig976.28551.1 vs. uniprot
Match: A0A3S6R5K0_9CAUD (DNA replication/modification protein n=2 Tax=unclassified Caeruleovirus TaxID=2233868 RepID=A0A3S6R5K0_9CAUD)

HSP 1 Score: 75.5 bits (184), Expect = 3.470e-14
Identity = 47/120 (39.17%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    1 IEVWKVIKQ---NGD-YFISSIDRVFSLKTLDYIKPSPDYKGYLKIMVRHRYKKKKNYLVSRLVALAFIKNPDNKPIVDHINGC-----VENLRWATHPENQKLIKIIPAVLKACRFGKT 333
            +E WK +K+   NGD Y +S+   V +  T   ++P  D  GYL++ +  +Y KK N+ V RLVALAF+ NPDNK +V+H +G      V N+ W TH EN   +  +   LK    GK+
Sbjct:    2 LEQWKSLKELVKNGDNYEVSNFGNVRNSITKKVLRPYGDGNGYLRVCLAEKYTKK-NHRVHRLVALAFLPNPDNKKVVNHKDGNKHHNNVTNIEWCTHSENT--VHALDTGLKGVPVGKS 118          
BLAST of mRNA_D-dudresnayi_contig976.28551.1 vs. uniprot
Match: UPI0011416C5F (HNH endonuclease n=1 Tax=Bacillus sp. 03113 TaxID=2578211 RepID=UPI0011416C5F)

HSP 1 Score: 72.0 bits (175), Expect = 1.050e-12
Identity = 39/101 (38.61%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 IEVWK----VIKQNGDYFISSIDRVFSLKTLDYIKPSPDYKGYLKIMVRHRYKKKKNYLVSRLVALAFIKNPDNKPIVDHINGC-----VENLRWATHPEN 276
            +EVW+    +++   +Y +S+   V ++ T   +KPS    GY +++++ R KK++ Y+V RLVA+AF++NPDNK +V+HI+G      V NL W T  EN
Sbjct:    1 MEVWRNLNGIVENGENYALSTCGNVVNITTGLALKPSQKRSGYCQVVLQ-RNKKRRYYVVHRLVAIAFLENPDNKAMVNHIDGVKTNNHVSNLEWVTPSEN 100          
BLAST of mRNA_D-dudresnayi_contig976.28551.1 vs. uniprot
Match: A0A1H8JHQ7_9BACI (NUMOD4 motif-containing protein n=1 Tax=Mesobacillus persicus TaxID=930146 RepID=A0A1H8JHQ7_9BACI)

HSP 1 Score: 73.6 bits (179), Expect = 1.190e-12
Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    4 EVWKVIKQNGDYFISSIDRVFSLKTLDYIKPSPDYKGYLKIMVRHRYKKKKNYLVSRLVALAFIKNPDNKPIVDHI-----NGCVENLRWATHPEN 276
            E WK IK   +Y++S    VFS KT   I  S +  GY  + +    K+K+  LV RLVA AFI NP+NKP+V+HI     N  V+NL+W T+ EN
Sbjct:  111 EEWKEIKDYTNYYVSKGGEVFSSKTNKVISQSINTSGYRTVNISVDGKRKR-LLVHRLVAEAFILNPENKPVVNHIDCNRSNASVDNLKWVTYSEN 205          
BLAST of mRNA_D-dudresnayi_contig976.28551.1 vs. uniprot
Match: F0YMB4_AURAN (AP2/ERF domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMB4_AURAN)

HSP 1 Score: 70.9 bits (172), Expect = 1.880e-12
Identity = 46/100 (46.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:    1 IEVWKVIKQNGDYFISSIDRVFSLKT--LDYIKPSPDYKGYLKIMVRHRYKKKKNYLVSRLVALAFIKNPDNKPIVDHI-----NGCVENLRWATHPENQ 279
            +E WK I+   +Y +S+   V S +   L Y   S D  GYL++ +    K KK  L+ RLVALAFI NP+NKP VDHI     N  + NLRWAT  ENQ
Sbjct:    1 MEQWKTIEDFPNYEVSTFGNVKSKRRNKLRYTSKSKD--GYLRMDMSVSGKSKKK-LIHRLVALAFIDNPENKPFVDHIDHDRTNNNISNLRWATQKENQ 97          
BLAST of mRNA_D-dudresnayi_contig976.28551.1 vs. uniprot
Match: A0A6S6XZY4_9FIRM (HNH endonuclease n=1 Tax=Ruminococcaceae bacterium BL-6 TaxID=2799561 RepID=A0A6S6XZY4_9FIRM)

HSP 1 Score: 70.5 bits (171), Expect = 3.820e-12
Identity = 45/97 (46.39%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    4 EVWKVIK-QNGDYFISSIDRVFSLKTLDYIKPSPDYKGYLKIMVRHRYKKKKNYLVSRLVALAFIKNPDNKPIVDHI-----NGCVENLRWATHPEN 276
            E +K IK  NG+Y IS+I RV+S+K+  Y+K + DY GYL + +  + K+K    V RLVA AFI NP+N P V+H      N CVENL W     N
Sbjct:    3 ESFKNIKGYNGEYKISNIGRVYSVKSNKYLKIAKDYHGYLFVNLCSKGKQKYKR-VHRLVAEAFIPNPNNLPEVNHKDENKENNCVENLEWCNRSYN 98          
BLAST of mRNA_D-dudresnayi_contig976.28551.1 vs. uniprot
Match: A0A0A0RMM3_9CAUD (HNH homing endonuclease n=1 Tax=Bacillus phage Mater TaxID=1540090 RepID=A0A0A0RMM3_9CAUD)

HSP 1 Score: 71.2 bits (173), Expect = 4.020e-12
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    4 EVWKVIKQ---NGD-YFISSIDRVFSLKTLDYIKPSPDYKGYLKIMVRHRYKKKKNYLVSRLVALAFIKNPDNKPIVDHINGC------VENLRWATHPENQK 282
            E WK +K    NGD Y +S++ RV ++ T   +  + ++KGYL++ +     KK+ Y + +LVALAFI NP+NKP V+HI G       V+NL WAT  EN +
Sbjct:    3 EQWKSLKGTVVNGDLYEVSNLGRVRNINTNAILSGAKNHKGYLRVCLTLDGAKKQ-YFIHKLVALAFIPNPENKPQVNHIKGLEKDNNRVDNLEWATRSENMQ 104          
BLAST of mRNA_D-dudresnayi_contig976.28551.1 vs. uniprot
Match: A0A843JFH1_9EURY (NUMOD4 motif-containing HNH endonuclease n=1 Tax=Methanobrevibacter sp. TaxID=66852 RepID=A0A843JFH1_9EURY)

HSP 1 Score: 68.6 bits (166), Expect = 4.030e-12
Identity = 41/104 (39.42%), Postives = 62/104 (59.62%), Query Frame = 1
Query:    1 IEVWKVIK-QNGDYFISSIDRVFSLKTLDYIKPSPDYKGYLKIMVRHRYKKKKNYLVSRLVALAFIKNPDNKPIVDHING-----CVENLRWATHPENQKLIKI 294
            +E +K IK   G Y I+S  R+FS+K   ++ P    KGYL++ + +   +KK+  V RLVA AFI NP+NKP ++H +G      + NL W T+ EN +  K+
Sbjct:    3 MEKFKDIKGYEGLYQITSWGRIFSIKKNKFLSPEVTNKGYLRVDLFNGKGEKKHCKVHRLVAEAFISNPENKPQINHKDGNKQNNSITNLEWCTNAENYEHAKL 106          
BLAST of mRNA_D-dudresnayi_contig976.28551.1 vs. uniprot
Match: A0A7X9XQT1_CLOBE (HNHc domain-containing protein n=1 Tax=Clostridium beijerinckii TaxID=1520 RepID=A0A7X9XQT1_CLOBE)

HSP 1 Score: 68.6 bits (166), Expect = 1.370e-11
Identity = 45/99 (45.45%), Postives = 57/99 (57.58%), Query Frame = 1
Query:    4 EVWKVIK-QNGDYFISSIDRV--FSLKTLDYIKPSPDYKGYLKIMVRHRYKKKKNYLVSRLVALAFIKNPDNKPIVDHIN-----GCVENLRWATHPEN 276
            EVW+ IK   G Y +SS   V  F       +KP  D  GYL+I + ++  K K + V R+VA+AFI NP NKP V+HIN       +ENL WATH EN
Sbjct:    3 EVWRDIKGYEGLYKVSSKGNVKSFYKSKARILKPLKDKDGYLRIDL-YKDGKPKTFQVHRIVAIAFIPNPSNKPEVNHINEDKTKNDIENLEWATHKEN 100          
BLAST of mRNA_D-dudresnayi_contig976.28551.1 vs. uniprot
Match: A0A0E3D9B7_9CAUD (Putative HNH homing endonuclease n=1 Tax=Bacillus phage BCP8-2 TaxID=1129192 RepID=A0A0E3D9B7_9CAUD)

HSP 1 Score: 69.7 bits (169), Expect = 1.620e-11
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 1
Query:    4 EVWKVIK---QNGD-YFISSIDRVFSLKTLDYIKPSPDYKGYLKIMVRHRYKKKKNYLVSRLVALAFIKNPDNKPIVDHINGC-----VENLRWATHPENQK 282
            E WK +K   + GD Y +S++  V +  T   + P    KGYL ++++ +  KKKN  + RLVALAFI NPDNKP V+H +G      + NL W+T PEN K
Sbjct:    4 ETWKSLKGIVECGDNYSVSTLGNVRNDTTGKILSPGTTEKGYLHVVLQ-KDGKKKNCRLHRLVALAFIPNPDNKPEVNHKDGIKTHCRLNNLEWSTRPENVK 104          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig976.28551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S2MXX9_9CAUD2.150e-1550.00HNH homing endonuclease n=1 Tax=Enterococcus phage... [more]
A0A3S6R5K0_9CAUD3.470e-1439.17DNA replication/modification protein n=2 Tax=uncla... [more]
UPI0011416C5F1.050e-1238.61HNH endonuclease n=1 Tax=Bacillus sp. 03113 TaxID=... [more]
A0A1H8JHQ7_9BACI1.190e-1244.79NUMOD4 motif-containing protein n=1 Tax=Mesobacill... [more]
F0YMB4_AURAN1.880e-1246.00AP2/ERF domain-containing protein n=1 Tax=Aureococ... [more]
A0A6S6XZY4_9FIRM3.820e-1246.39HNH endonuclease n=1 Tax=Ruminococcaceae bacterium... [more]
A0A0A0RMM3_9CAUD4.020e-1241.75HNH homing endonuclease n=1 Tax=Bacillus phage Mat... [more]
A0A843JFH1_9EURY4.030e-1239.42NUMOD4 motif-containing HNH endonuclease n=1 Tax=M... [more]
A0A7X9XQT1_CLOBE1.370e-1145.45HNHc domain-containing protein n=1 Tax=Clostridium... [more]
A0A0E3D9B7_9CAUD1.620e-1143.14Putative HNH homing endonuclease n=1 Tax=Bacillus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig976contigD-dudresnayi_contig976:8941..9413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size473
Cds size219
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930931.5279768-UTR-D-dudresnayi_contig976:8940..91941622930931.5279768-UTR-D-dudresnayi_contig976:8940..9194Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig976 8941..9194 +
1690557969.9645603-UTR-D-dudresnayi_contig976:8940..91941690557969.9645603-UTR-D-dudresnayi_contig976:8940..9194Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig976 8941..9194 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930931.5495696-CDS-D-dudresnayi_contig976:9194..94131622930931.5495696-CDS-D-dudresnayi_contig976:9194..9413Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig976 9195..9413 +
1690557969.9755743-CDS-D-dudresnayi_contig976:9194..94131690557969.9755743-CDS-D-dudresnayi_contig976:9194..9413Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig976 9195..9413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig976.28551.1prot_D-dudresnayi_contig976.28551.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig976 9195..9413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig976.28551.1

>prot_D-dudresnayi_contig976.28551.1 ID=prot_D-dudresnayi_contig976.28551.1|Name=mRNA_D-dudresnayi_contig976.28551.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=73bp
MGYTPRKSKINKNNTSSAKGVSFWKNQGKWVAQIKIHGTHVFLGCFQTFE
EAKEARIKNANEVFGAYDCERM*
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mRNA from alignment at D-dudresnayi_contig976:8941..9413+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig976.28551.1 ID=mRNA_D-dudresnayi_contig976.28551.1|Name=mRNA_D-dudresnayi_contig976.28551.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=473bp|location=Sequence derived from alignment at D-dudresnayi_contig976:8941..9413+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATCGAAGTGTGGAAAGTTATTAAACAAAATGGCGACTATTTTATTTCCAG CATAGACAGAGTGTTTTCGTTGAAGACACTCGATTATATAAAGCCTTCAC CAGATTACAAAGGTTATTTAAAGATCATGGTGCGCCATAGATATAAAAAG AAAAAGAATTACCTGGTAAGTCGATTAGTTGCTTTAGCATTTATTAAAAA TCCAGATAACAAACCCATAGTTGACCACATAAATGGGTGTGTTGAAAATC TTAGATGGGCTACACACCCAGAAAATCAAAAATTAATAAAAATAATACCA GCAGTGCTAAAGGCGTGTCGTTTTGGAAAAACCAAGGCAAATGGGTGGCA CAAATCAAAATTCACGGGACACATGTATTCCTTGGTTGTTTTCAAACATT TGAAGAAGCAAAGGAAGCTAGAATTAAAAACGCCAATGAAGTGTTTGGAG CTTACGATTGTGAGCGAATGTAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig976:8941..9413+

>mRNA_D-dudresnayi_contig976.28551.1 ID=mRNA_D-dudresnayi_contig976.28551.1|Name=mRNA_D-dudresnayi_contig976.28551.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at D-dudresnayi_contig976:8941..9413+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGGCTACACACCCAGAAAATCAAAAATTAATAAAAATAATACCAGCAG
TGCTAAAGGCGTGTCGTTTTGGAAAAACCAAGGCAAATGGGTGGCACAAA
TCAAAATTCACGGGACACATGTATTCCTTGGTTGTTTTCAAACATTTGAA
GAAGCAAAGGAAGCTAGAATTAAAAACGCCAATGAAGTGTTTGGAGCTTA
CGATTGTGAGCGAATGTAAATGGGCTACACACCCAGAAAATCAAAAATTA
ATAAAAATAATACCAGCAGTGCTAAAGGCGTGTCGTTTTGGAAAAACCAA
GGCAAATGGGTGGCACAAATCAAAATTCACGGGACACATGTATTCCTTGG
TTGTTTTCAAACATTTGAAGAAGCAAAGGAAGCTAGAATTAAAAACGCCA
ATGAAGTGTTTGGAGCTTACGATTGTGAGCGAATGTAA
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