mRNA_D-dudresnayi_contig973.28515.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig973.28515.1
Unique NamemRNA_D-dudresnayi_contig973.28515.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig973.28515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig973contigD-dudresnayi_contig973:20620..21543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.4880564-CDS-D-dudresnayi_contig973:20621..207201622930926.4880564-CDS-D-dudresnayi_contig973:20621..20720Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig973 20622..20720 -
1690557968.008082-CDS-D-dudresnayi_contig973:20621..207201690557968.008082-CDS-D-dudresnayi_contig973:20621..20720Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig973 20622..20720 -
1622930926.5109694-CDS-D-dudresnayi_contig973:21390..215431622930926.5109694-CDS-D-dudresnayi_contig973:21390..21543Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig973 21391..21543 -
1690557968.0185513-CDS-D-dudresnayi_contig973:21390..215431690557968.0185513-CDS-D-dudresnayi_contig973:21390..21543Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig973 21391..21543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig973.28515.1prot_D-dudresnayi_contig973.28515.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig973 20622..21543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig973.28515.1

>prot_D-dudresnayi_contig973.28515.1 ID=prot_D-dudresnayi_contig973.28515.1|Name=mRNA_D-dudresnayi_contig973.28515.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=84bp
PAHQGGGGRHDRGQVVGTGSMRSPTIKGGPLAGERARYRIYRHGPPHHMY
QASPLTTRGPILLDPRGRHGGPIKTALGRGGGGW
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mRNA from alignment at D-dudresnayi_contig973:20620..21543-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig973.28515.1 ID=mRNA_D-dudresnayi_contig973.28515.1|Name=mRNA_D-dudresnayi_contig973.28515.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=924bp|location=Sequence derived from alignment at D-dudresnayi_contig973:20620..21543- (Desmarestia dudresnayi DdudBR16 monoicous)
CCTGCCCACCAGGGCGGCGGAGGGCGGCACGACCGAGGCCAGGTTGTTGG
AACGGGTAGCATGAGAAGTCCCACGATCAAGGGCGGGCCTCTTGCTGGAG
AAAGAGCACGCTACCGCATTTACCGACACGGCCCACCACACCACATGTAC
CAGGTACGTTCTCAGTGCGTGGTCGTTGGTGGACCGTGTCGGGGGGTGTA
CTCATTTCATGCGTGACCGTAGTCGTGTGACCATAGACCCTCGCATCCTA
CAATGCCGGGACGTAGCACGTCCTCACTGGCGGACCGCGTGTGGGATGTC
GTTCGCAGCAGCAGCAGCGGATGCTGGTATACCCAGAGAAGTCATGAACG
AACAGTATGGGAGTAATATGACAAAGCTCCGCGTGCTGGCTCTCAACCCC
ATTTGTCGTTGTTGTTGTTGTTTTTGTTTTACATTTTTTATTTAATGTTT
ACTATAGGCTCTAGAGCTCAACTATTTTGTTCCATTACTTCTTTTTTTAG
TGTTTCGTCTGCGAATGTTTGAGGGATCTAATCATATATGATTCGATGTG
ATTTGTTTTGATTTGAGTTTCTTGATTCTTTTGGTATACTTTTTCCGAAA
AATACAAATAACCGCCGATCCAAGGTCGGTTTTCGGTTTTGGTGATAACC
TCAACCCTTACCGCGGGCTCTCAATTGCTATCTATATCTATATATATTGA
TGCTTTGGCCAGCTATCATGCCCGGAACATGTTGGCACGCTCTTTGTCAT
TATTTATTAATAGTGACCTTTGTTGATTATCATTTCTTTCCCGTTGTCTT
TCTTTTCCCTACCTTTCTCGTAGGCATCTCCACTTACCACCAGAGGCCCG
ATCCTCCTCGACCCAAGGGGGCGACACGGAGGCCCCATAAAGACAGCTCT
CGGGAGGGGGGGTGGAGGGTGGAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig973:20620..21543-

>mRNA_D-dudresnayi_contig973.28515.1 ID=mRNA_D-dudresnayi_contig973.28515.1|Name=mRNA_D-dudresnayi_contig973.28515.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at D-dudresnayi_contig973:20620..21543- (Desmarestia dudresnayi DdudBR16 monoicous)
CCTGCCCACCAGGGCGGCGGAGGGCGGCACGACCGAGGCCAGGTTGTTGG
AACGGGTAGCATGAGAAGTCCCACGATCAAGGGCGGGCCTCTTGCTGGAG
AAAGAGCACGCTACCGCATTTACCGACACGGCCCACCACACCACATGTAC
CAGCCTGCCCACCAGGGCGGCGGAGGGCGGCACGACCGAGGCCAGGTTGT
TGGAACGGGTAGCATGAGAAGTCCCACGATCAAGGGCGGGCCTCTTGCTG
GAGAAAGAGCACGCTACCGCATTTACCGACACGGCCCACCACACCACATG
TACCAGGCATCTCCACTTACCACCAGAGGCCCGATCCTCCTCGACCCAAG
GGGGCGACACGGAGGCCCCATAAAGACAGCTCTCGGGAGGGGGGGTGGAG
GGTGGGCATCTCCACTTACCACCAGAGGCCCGATCCTCCTCGACCCAAGG
GGGCGACACGGAGGCCCCATAAAGACAGCTCTCGGGAGGGGGGGTGGAGG
GTGG
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