mRNA_D-dudresnayi_contig9601.28385.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9601.28385.1
Unique NamemRNA_D-dudresnayi_contig9601.28385.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9601.28385.1 vs. uniprot
Match: A0A6H5L564_9PHAE (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L564_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.450e-30
Identity = 70/143 (48.95%), Postives = 85/143 (59.44%), Query Frame = 1
Query:   37 MESCPVCYENFSL----SVARKLPCGHVACTQCLEECFEGDSEGRDKSESEGPGVRCPECFVLFLFDSVQSVSTYD--AAGEECEADGRDLPNTILEEPGDQ----------SVSQTNGGRSGTSKMAAFLSTNKAQNHVPTF 417
            M+SCPVCY  FS     +V R+LPCGHVACT CL +C++   E RD  E +G GVRCPECF L + DSV+SV  YD  AA  E + DG +    + EE GD           +VS         SK+AAFLS NKA+ HVPTF
Sbjct:    1 MDSCPVCYSAFSSEEAGTVGRRLPCGHVACTACLHDCWDAPPEHRDPKEPKGAGVRCPECFTLHVLDSVESVPVYDVEAATLEGQGDGDNELERVEEELGDAGQDETIEEAAAVSPPPSPAPKASKLAAFLSANKAEKHVPTF 143          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9601.28385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L564_9PHAE1.450e-3048.95Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9601contigD-dudresnayi_contig9601:2882..9178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size462
Cds size462
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9601.28385.1prot_D-dudresnayi_contig9601.28385.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9601 2882..9178 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930909.0288906-CDS-D-dudresnayi_contig9601:2881..30261622930909.0288906-CDS-D-dudresnayi_contig9601:2881..3026Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9601 2882..3026 -
1690557961.6628275-CDS-D-dudresnayi_contig9601:2881..30261690557961.6628275-CDS-D-dudresnayi_contig9601:2881..3026Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9601 2882..3026 -
1622930909.0472264-CDS-D-dudresnayi_contig9601:3643..37861622930909.0472264-CDS-D-dudresnayi_contig9601:3643..3786Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9601 3644..3786 -
1690557961.6734524-CDS-D-dudresnayi_contig9601:3643..37861690557961.6734524-CDS-D-dudresnayi_contig9601:3643..3786Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9601 3644..3786 -
1622930909.0684829-CDS-D-dudresnayi_contig9601:9004..91781622930909.0684829-CDS-D-dudresnayi_contig9601:9004..9178Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9601 9005..9178 -
1690557961.6839755-CDS-D-dudresnayi_contig9601:9004..91781690557961.6839755-CDS-D-dudresnayi_contig9601:9004..9178Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9601 9005..9178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9601.28385.1

>prot_D-dudresnayi_contig9601.28385.1 ID=prot_D-dudresnayi_contig9601.28385.1|Name=mRNA_D-dudresnayi_contig9601.28385.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=154bp
ARANLIWGWGGAMESCPVCYENFSLSVARKLPCGHVACTQCLEECFEGDS
EGRDKSESEGPGVRCPECFVLFLFDSVQSVSTYDAAGEECEADGRDLPNT
ILEEPGDQSVSQTNGGRSGTSKMAAFLSTNKAQNHVPTFGVDEGEGDDEE
GDAA
back to top

mRNA from alignment at D-dudresnayi_contig9601:2882..9178-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9601.28385.1 ID=mRNA_D-dudresnayi_contig9601.28385.1|Name=mRNA_D-dudresnayi_contig9601.28385.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=6297bp|location=Sequence derived from alignment at D-dudresnayi_contig9601:2882..9178- (Desmarestia dudresnayi DdudBR16 monoicous)
GCGAGAGCAAATTTGATTTGGGGTTGGGGGGGAGCGATGGAGAGCTGCCC GGTTTGCTACGAAAATTTCTCATTGAGCGTTGCGAGGAAGTTACCGTGCG GTCACGTCGCGTGCACGCAATGCCTGGAGGAGTGCTTCGAGGGCGACAGC GAAGGACGCGACAAATCAGAGTCTGTAAGAAGTGAAGACTACTACACAGT AAGCTATGATAGTACAACGAGTACTACAGAGTCGTATTAATAGTACTATC TTATCATAGCATACTGATATTGATTGCGGCCACGCTTCGCTGTGTGTTAT CTTGCAGTATGTATTACTCTGTCGTGAACGCGATCGCAGCAACGTGATGG AGTGCAGTCTATAATTCAGCGATTACGCTGTCACTGCATAGCGAGTTTGC ATTTTACTCGTAGGAATACCAGTACAGTAGAGTAGATAGACCGATGAGGC AGAATTATTGAGCATTGTTATAATAGAGGGCACAACAACAGATAGATGAC ACGAAACAATGGCAGGGACTTCAATACTTGTTTGAACTGGAACAGAGGCA GGATCAATACTAAGTATACTATTATACTACTACTGTCGTTGTACTACTGT CGTAGTGGAATGTTATACTCGTAGTCCGCCTATCTGAGGGATAATAGATA ATAGGCGCTCGCCCGAAATAAAATCATAATGCGACACTTGTGGCGGTATG GTGTTGAAATGGCTCCCCAAAGTAAAGCTCGTGGCCAGCAGTAGTATGTA TAGTAGTATAGTAGTATAGTAGTATAGCATCGGTGAGTTAGGTGCGCACT CCTATCCTGCGCACGAAGAGACACAGACTATTAATACAACTCTCTGTCTA TGAAGAGTACTCCGTGTTCATCGACTTGACCTTGTTTTTTTACGTGTGAC GGATCAAAATGAGGATAACACTACTTGCACGATACGATACCAGGTATTAT TATTTTTACTTGCGAAGACATCAGCCGTGACATTCCAAACTGGTTCGGGG GGCAGGGGATAATCGTCAACCTCACTGTGTGATACTATCGGTCGCGCGGA TTCTATCGGTCCTCAGATAAGTTTTAACGCAGTGGCTCCCCTGGGGTGTC CCAGGCTCTTATAGCGGTACGCCATCACGGTACAGAGGCAACACTACCCC CCCCCCCCCCGCGCGCGCTTGTGCACGATGTTCGGGCGGTGCTGTTGTCG ATAGACAAAATAGTCTAATAATAAAGAAGAGCTTCGTGTTCTTATCTCAT CAGTGATATCGCACTTACGTCTGGAAGAGTATCATCCGTGTTTTGTGCCG CGCGGAGATGAAAAGAAGAAGCTGAAAACAGGAAACAGAGGACATAGTGC AGCTGCAGCCAGAGTGATTCGACGTTGATTTGCTGATAATAGCGTACAAT ACAAATTCTATCATATGATACGATAGATGATAGCACAAATGTACGAATCG GTTCTGAGAAGGCGACATATCGAACAGACCCGCCGCTTTATACATACCTA TAGTTTATACTATAATATCATACGAGATACAAGTATAGTTTATGACTTCA TGATGTGGTCTGCATCTAACGGCGACCTTTGAAATCGGACCTGCGATAGC TAACATGCGAGCCCAACAATCTGCGTCTTGGTTGCCAGGTTGCGGTACTA CTGTTGTTACAACAGTACAGAACATATACGAAGTATGCGCGAACGAGCTC AGTATGATGATGGTAGTAGAGCTATGATATGGTATGATACAAAGTATGAT ACGAGTGAGCGATCGCGAGGTGATCATCTTGCTCTGATATTATGATGATA TTATGATGTTGCGTTTACTGCCCCCTCGTGCCTTTTGATGACATCGTGAC CTGCCTGTTCTGCTTGCGGTGTCGGTAGTGTGGTGTGCCTGCTTTTTATC TGACATTTGTTATTATAGCACGGAAGTATCATGATACTTACTATTAATAC TTTTTACTCCCGTTTGAGCAGCATCGCATTTTTTTATGAAGTACTACTGT ATGAATGTGAATGTGAATGTATCAATTGCCGATAAAGGATGGCGTGCCTC TGTTTTCTGTTTGCTGTTTGTTGTCTGTTGAAAGCCGTGTCACGTTGTGC GCACGCCGCACGCCCCCGACACCCCGGTATTTCTTAGTTTTACGACTTAT TGATTGTGATCGCACAGCGCAGCAGGAGCTTTTCTTTTTTTTTTAACCTG CCTGGTATGGCATTATACTCGCACACCGCGCAAGTCCGTATCGAGCTCTA TCAATACATGACTTATGTGTCTGTTGTGGCATTACCGTATACTGGCTCTG TTGTTGTACTGCACTATAATACACGTATATCAAGCGATCCTCGTACTACT ACTGTTGTATTGCTGACTCTCAAGTCGTCACGGGACTTCCCTGGGAGTAG TCTCAGAACAGAGTACAGAGGAGGACAAAGCAGGCCGCGCCCTTTATCAT ATCATATCATATCATATCATATCATATCATATCATATCATGTCTTATCAT ATCATGTCATATCATACCGGGCGTGAATCAATTGATTCGTCGCACTCACA AATCCATCATTGCATTTTTTCGTTAGAGCTATAGCACCATCATACTCGCA CTGTTCGAAGGTTAAGGTTAGGACTGCACGAGGCTATGCGCTTGGTTAGT ATTGCAATGTCCTCAACAATAGTACGGTAGTGCTATGATAATAGGTACCT GGTAACTGCTCTATTCTGCGGGTGTTGAAGTCGTTCTATGACAGTTGTTG TTGTTTCTCACATTAGCTCATCTCAAACGATTTCGCCCGTGGTCACAAAA CCCGGCACCATAACGCTCCAGAAGGAACGACAAAGAAAAATAAAGCAAAA CATACATATGAGAAAGAGCAATACAGTGCGCCCAAGGAGGGCGGCTCCTT TCGCAAGAAAAAGAAAATACTTTCACAGACTCGAAATAAACTCATGACAA AAATAAGCCCACAACCAAGAAACCAAAGAACACCACAGACAACAAAAAAG GTGTGGTAAAAGAGGTTTTGTCTCGACAGACTTTGTGGGATATCGTCTCC TCCGGAAGTGAAAATTAATTAGTTCAAACTATTATTATTATTATTATTAT TATTATTATATTATACTAGAACAGCAACAGCACCAATCTCATCAGTGCGA GATTTTACCCGTTATAAAGGTCATCTCCACATTACCCCCCCTTTTTGAGA CTTTGCTCTTAGGGCCTGTCCTAACCAAATTTAAGGATTCAGAATTTTTG GAAAATTTTGAATTGCACTGCTGAAAATTACCGTTTGTGTCTTAACAAAT TTCTCGAGCTTTGAACTTACAAGCAAACAGTGCCTATCGCACAAGAAACC CAATTGCACCACCGCAACACGTACACGACGACAAAACGCCCACAAAGGAC GCAGCAAGCCTCTAGTTTGGTTCACGTACTCACTACACAGCTCGATACCG CCGGCCTGCTTTGGCAGTTCGGCAAAATCCGCGAAAACCACAACATGTTT TGCTCTTGGCGCGAGCTCGCAGTACTGTTGTGCTATATTTCAGCTTCTGT GTGGGTCAATTGGGACGCGTGACACCTCTTCGTTATATTTGTGATCCTGT TGTGTTTGTGCCTTGTGCTGCGACCTCGGGTGCGGCGCTACGGGCTTCGC GGCACCTTGTTTAGTACTGTGCTATGTTGCAGCTCCTGGGCGAGTTCCAA CAGTCGAGGCGTTTATTTGCTGAATTGTGAATCCTGAACAAATTAAATGC TTCGCTACTTCTTTTCTTCAGCCTTCAGATAGTTCAAGAATTTCTTGCTC TTAACAAACTACGCAGAAGGGCTGCCCAATCAGAGTTTCGCATTGCAGGT GTCAACTGAATTCTTGCAGAATTCTGAATTATTAAATTTTGATAAGAGAC CCTTAGGCAACAAGTTTTCTTAAGGGTAACCGGAACCCGACTAAAGGGAC AAAAGGGACCGGCTGGCGGCGAAACGTTCCCTTTTTTTCTTGGGTTGGGG TTCAGTGCGTGTTTAGTGTGGGTTTGCTACGTCACCACGTCATCAGAAGC TTCGTCAGTTGGAAGATCGAACTTTTTGGTTCCCTATTAATAACCGTTTT TCTAACATTAATGTTTTTTTTGTTGTTGGAGGATTATTGGTGGGTGGCGG GAATTGAACCCGGGTCTTTGCCAACCTAAAGTCAGATATCTCATCGACGG TGCCAATGTAATAAAAATTATCCTGTCTGTAGAGCCTGGGACACCCCAGG GGAGCCACTGCGTTATAACTTATTGGAGGACCGATAGAATCCGCGCGACC GATGTATCACACAGTGAGGTTGACGATTATCCCCTGACCCCCGAACCAGT TTGGAACGTCACGGCTGATGTCTTTGTAAGATAAAATAATAATATGATAG GATTATCTAAGCGTCAACTACAGGTAGCTAAAGCTACAGCTGCACCCCCC CCCCTTCTCTGTAGGTCTAGCCATAGATCATGGATACACGCATGGGGTCC CCAGGGGGGGGGGCATCACGGTCGTACGGCAATAAGGCAGTACCAGCGCA CACTCAGGAGTAAACATACCATGTGTACTATCACAGTACTATCGTGGCGT AATACAGCTACAGCTATGATATACACAGCATGCGTGCAAGAAGGACATGC TATGGTGGTGTTCAGTCCTTGGGCCCATTGTTGTATGTATGCACTATAGG GCAGGGCGGTCGACTACGCACATACCGCAGTCCACTTTTGTAGCTTACCT CTGTTGTGATGTTAGTTACGTACTAGCGGCGTTGTTGGCGTATTAATACA CCTCGAAGTATTAATATGTTGATAGTGGATACTCAAACACTCCCCCGGTC CCGCTATTCGAATAGACCTAATAGACCTAATAGAACTAATATACCTAATG CAGCTTTGGTACAACTGCACATGCGGCTGACCCTAACAATCGTAGCCCTT GCGATATAGGTGGTCACTGATGACTGATGAGTGATGAGTGATGAGCTAAT GTGAGAAGGGCAACGACATGTGGTTCTTGCCGATCTTGTTGCCTCAAAGC TAAGCACGCACAACAAACGTGCTACAGTAGTAGTAGTAGTAGCTGGTTCG TGCCCCGTGCAGCATCCATCCTCGTGTTCCGTAATGACTTCCCTCTGTTA CACTGACCTCATCTATATATATATATTATATATATATCATACTGCTCGAT AATCGCAGACTACAGTATTATTAGATTAATAATATATCTGTTCGGGAGAT ATATCTCGGCGTAGGTCTGGAGTATTCATGTCGAATGTTCCGGCCGCATA TGTCGTTACCTGCGGTGTTTCCTGTTAACCTCGGGGAATATTGCGATGTC GTCATGTCTTTTCGTGTCGTGTGCCGGATGTGGGACACTCAGGAGGGGCC TGGCGTTCGCTGCCCGGAGTGCTTCGTTTTGTTCCTGTTCGATAGCGTCC AGTCTGTCAGCACGTATGACGCGGCTGGAGAGGAGTGCGAAGCGGATGGG CGAGATTTACCTAACACTATTCTTGAGGAGCCAGGGTGAGCGCGTTTTTT ATCACCACATTAAATCACAACTCGGCGTGACGTGACATGACGTGACGTGA CGTGACGTGACGTGACGTGACGTGACGTGACGAGCGTGGTTTGTTGTTGC GGTGCCCTACCTTTAAGTTCAAGCCAAGCCGAATTTGACTCGTGTTCACA GCTATCATAGCAACCATTGCTCTCGTGATATCATAACGCTATGTAGATGA TCGAGATCGATTAATAGACTGGTTGGGCATACCGTATACGGTATACTGTT TACCGTTTACCGTATACTGTACCTTTGTACGAAGGGGGAGAGACCTGCGT GGATAGAGGCGCCTTCATGTTCCACCAACGATCCTCCTGTGAGCCACGAA TGATCCATTTATGGTCCACCTATGTATGGAGGGGTCATATTGCACGTGGT AGACGTGACGAGACGGCATTCAAGACGCGCTCAAAGGCCGTGTGTAGCTT TTCGTAGTATCATACTTCGTATCATGAATACTATACTACTCGTACTGTGT TGTCGTTATATCTGATATCCTCAGTTGGTACTACCATAGCCCGGCAAACC AGGTTCTGTTGTTTTGAAATCGCGGTCTGTATTCTGCCGTTTCGTACAAT AGGGACCAATCTGTTTCGCAAACAAATGGCGGACGCAGCGGGACTTCAAA GATGGCTGCGTTTTTGAGCACCAACAAGGCCCAAAACCACGTTCCGACAT TCGGGGTAGATGAGGGGGAAGGAGATGACGAGGAGGGAGATGCCGCG
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig9601:2882..9178-

>mRNA_D-dudresnayi_contig9601.28385.1 ID=mRNA_D-dudresnayi_contig9601.28385.1|Name=mRNA_D-dudresnayi_contig9601.28385.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at D-dudresnayi_contig9601:2882..9178- (Desmarestia dudresnayi DdudBR16 monoicous)
GCGAGAGCAAATTTGATTTGGGGTTGGGGGGGAGCGATGGAGAGCTGCCC
GGTTTGCTACGAAAATTTCTCATTGAGCGTTGCGAGGAAGTTACCGTGCG
GTCACGTCGCGTGCACGCAATGCCTGGAGGAGTGCTTCGAGGGCGACAGC
GAAGGACGCGACAAATCAGAGTCTGCGAGAGCAAATTTGATTTGGGGTTG
GGGGGGAGCGATGGAGAGCTGCCCGGTTTGCTACGAAAATTTCTCATTGA
GCGTTGCGAGGAAGTTACCGTGCGGTCACGTCGCGTGCACGCAATGCCTG
GAGGAGTGCTTCGAGGGCGACAGCGAAGGACGCGACAAATCAGAGTCTGA
GGGGCCTGGCGTTCGCTGCCCGGAGTGCTTCGTTTTGTTCCTGTTCGATA
GCGTCCAGTCTGTCAGCACGTATGACGCGGCTGGAGAGGAGTGCGAAGCG
GATGGGCGAGATTTACCTAACACTATTCTTGAGGAGCCAGGGAGGGGCCT
GGCGTTCGCTGCCCGGAGTGCTTCGTTTTGTTCCTGTTCGATAGCGTCCA
GTCTGTCAGCACGTATGACGCGGCTGGAGAGGAGTGCGAAGCGGATGGGC
GAGATTTACCTAACACTATTCTTGAGGAGCCAGGGGACCAATCTGTTTCG
CAAACAAATGGCGGACGCAGCGGGACTTCAAAGATGGCTGCGTTTTTGAG
CACCAACAAGGCCCAAAACCACGTTCCGACATTCGGGGTAGATGAGGGGG
AAGGAGATGACGAGGAGGGAGATGCCGCGGGACCAATCTGTTTCGCAAAC
AAATGGCGGACGCAGCGGGACTTCAAAGATGGCTGCGTTTTTGAGCACCA
ACAAGGCCCAAAACCACGTTCCGACATTCGGGGTAGATGAGGGGGAAGGA
GATGACGAGGAGGGAGATGCCGCG
back to top