prot_D-dudresnayi_contig10236.280.1 (polypeptide) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_D-dudresnayi_contig10236.280.1
Unique Name	prot_D-dudresnayi_contig10236.280.1
Type	polypeptide
Organism	Desmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Sequence length	92

Homology

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BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A7S3M171_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M171_9STRA)

HSP 1 Score: 172 bits (436), Expect = 2.490e-54
Identity = 88/91 (96.70%), Postives = 91/91 (100.00%), Query Frame = 0

Query:    1 MSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTA 91
            MSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLG+VEE+VTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT+
Sbjct:    1 MSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGEVEESVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTS 91

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BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A7S2FJT0_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJT0_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.170e-47
Identity = 75/90 (83.33%), Postives = 86/90 (95.56%), Query Frame = 0

Query:    1 MSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT 90
            MS++ PLDLIRLS+DERI+VKC+GDRELRGKLHA+DQHLNMVLGDVEE VTT+EIDE+T EEI++TSKR IEMLFVRGD+VILVSPPLRT
Sbjct:   19 MSVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEDTSEEIIRTSKRMIEMLFVRGDVVILVSPPLRT 108

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BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A7S2GP21_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GP21_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.980e-46
Identity = 73/89 (82.02%), Postives = 85/89 (95.51%), Query Frame = 0

Query:    2 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT 90
            S++ PLDLIRLS+DERI+VKC+GDRELRGKLHA+DQHLNMVLGDVEE VTT+E+DE+T EEI++TSKR IEMLFVRGD+VILVSPPLRT
Sbjct:   13 SVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQELDEDTNEEIIRTSKRMIEMLFVRGDVVILVSPPLRT 101

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BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A4D9CUN8_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUN8_9STRA)

HSP 1 Score: 150 bits (380), Expect = 9.240e-46
Identity = 71/90 (78.89%), Postives = 86/90 (95.56%), Query Frame = 0

Query:    2 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTA 91
            S+D PLDLIRLS++ERI+VKC+G+RELRGKLHAFD+HLNM+LG+VEE VTT EIDEET+EEI++TS+R +EMLFVRGD+VILVSPPLRTA
Sbjct:    4 SVDEPLDLIRLSLEERIYVKCRGERELRGKLHAFDRHLNMILGEVEETVTTPEIDEETDEEIIRTSRRTVEMLFVRGDVVILVSPPLRTA 93

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BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A7S0G6S6_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S0G6S6_9STRA)

HSP 1 Score: 147 bits (372), Expect = 3.730e-44
Identity = 70/91 (76.92%), Postives = 85/91 (93.41%), Query Frame = 0

Query:    1 MSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTA 91
            + ++ PLDLIRLSIDER++VKC+GDRELRGKLHA+DQHLNMVLG+VEE VTT E+DEETEEEIV+ + R+++MLFVRGDIV+LVSPPLRTA
Sbjct:   32 VKMEEPLDLIRLSIDERVYVKCRGDRELRGKLHAYDQHLNMVLGEVEETVTTHEVDEETEEEIVRKATRSVKMLFVRGDIVVLVSPPLRTA 122

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BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: D7FXS6_ECTSI (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS6_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 4.400e-44
Identity = 71/89 (79.78%), Postives = 84/89 (94.38%), Query Frame = 0

Query:    2 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT 90
            S++ PLDLIRLS+DERI VKC+G+RELRGKLH++DQHLNMVLGDVEE VTT E+DE+T EEIV+TSKR+IEMLFVRGD+VILVSPP+RT
Sbjct:    4 SVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRT 92

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BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A7S0AM25_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AM25_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.590e-42
Identity = 70/90 (77.78%), Postives = 82/90 (91.11%), Query Frame = 0

Query:    2 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTA 91
            +++ PLDLIRLSIDER++VKC+ DRELRGKLHAFDQHLNMVLG+VEE VT+ EIDEET+EEIVK + R + MLFVRGDIV+LVSPPLRTA
Sbjct:   34 TMEEPLDLIRLSIDERVYVKCRNDRELRGKLHAFDQHLNMVLGEVEETVTSYEIDEETDEEIVKKATRQVGMLFVRGDIVVLVSPPLRTA 123

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BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A067C375_SAPPC (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C375_SAPPC)

HSP 1 Score: 141 bits (356), Expect = 4.100e-42
Identity = 66/89 (74.16%), Postives = 81/89 (91.01%), Query Frame = 0

Query:    2 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT 90
            SID PLDLI+LS+DERI+VKC+GDRELRGKL A+DQHLNM+L DVEE VT+ E+D+ET EEIVK +KR +EMLFVRGD+++LV+PPLRT
Sbjct:    3 SIDEPLDLIKLSLDERIYVKCRGDRELRGKLQAYDQHLNMILSDVEETVTSHEVDQETYEEIVKQAKRQVEMLFVRGDVIVLVAPPLRT 91

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BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A0M0JVC1_9EUKA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVC1_9EUKA)

HSP 1 Score: 141 bits (355), Expect = 6.190e-42
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 0

Query:    6 PLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT 90
            P+DL+RLS+DERI VK +GDRELRGKLHA+DQHLNMVLGDVEE VTT E+DEET EEI+KTSKR IEMLFVRGD VIL+SPPLRT
Sbjct:    9 PIDLVRLSLDERIHVKMRGDRELRGKLHAYDQHLNMVLGDVEEVVTTVEVDEETYEEIIKTSKRQIEMLFVRGDGVILISPPLRT 93

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BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: B7GDI5_PHATC (U6 snRNA-associated Sm-like protein LSm3 n=5 Tax=Bacillariophyta TaxID=2836 RepID=B7GDI5_PHATC)

HSP 1 Score: 140 bits (354), Expect = 7.570e-42
Identity = 67/87 (77.01%), Postives = 78/87 (89.66%), Query Frame = 0

Query:    4 DTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT 90
            + PLDLIRLSIDER++VKC+GDRELRGKLH +DQHLNM+LGDVEE VT+ EIDEET+E+IVK   R + MLFVRGDIV+LVSPPLRT
Sbjct:    2 EEPLDLIRLSIDERVYVKCRGDRELRGKLHGYDQHLNMILGDVEETVTSTEIDEETDEQIVKKQTRKVGMLFVRGDIVVLVSPPLRT 88

The following BLAST results are available for this feature:

BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot

BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S3M171_9STRA	2.490e-54	96.70	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=S...	[more]
A0A7S2FJT0_9STRA	3.170e-47	83.33	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=F...	[more]
A0A7S2GP21_9STRA	2.980e-46	82.02	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D...	[more]
A0A4D9CUN8_9STRA	9.240e-46	78.89	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=N...	[more]
A0A7S0G6S6_9STRA	3.730e-44	76.92	U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=B...	[more]
D7FXS6_ECTSI	4.400e-44	79.78	U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E...	[more]
A0A7S0AM25_9STRA	2.590e-42	77.78	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=M...	[more]
A0A067C375_SAPPC	4.100e-42	74.16	U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=S...	[more]
A0A0M0JVC1_9EUKA	6.190e-42	82.35	U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=C...	[more]
B7GDI5_PHATC	7.570e-42	77.01	U6 snRNA-associated Sm-like protein LSm3 n=5 Tax=B...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 8..86 e-value: 5.8E-21 score: 85.6
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 10..86 e-value: 5.7E-20 score: 70.8
None	No IPR available	GENE3D	2.30.30.100		coord: 1..88 e-value: 1.8E-30 score: 106.6
None	No IPR available	PANTHER	PTHR13110:SF11		coord: 3..91
IPR040002	U6 snRNA-associated Sm-like protein Lsm3	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 3..91
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 5..87

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-dudresnayi_contig10236	contig	D-dudresnayi_contig10236:944..1413 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_D-dudresnayi_contig10236.280.1	mRNA_D-dudresnayi_contig10236.280.1	Desmarestia dudresnayi DdudBR16 monoicous	mRNA	D-dudresnayi_contig10236 944..1419 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_D-dudresnayi_contig10236.280.1 ID=prot_D-dudresnayi_contig10236.280.1|Name=mRNA_D-dudresnayi_contig10236.280.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=92bp
MSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAV
TTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR040002	Sm-like_LSM3
IPR010920	LSM_dom_sf