mRNA_D-dudresnayi_contig10236.280.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10236.280.1
Unique NamemRNA_D-dudresnayi_contig10236.280.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A7S3M171_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M171_9STRA)

HSP 1 Score: 172 bits (436), Expect = 2.710e-54
Identity = 88/91 (96.70%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    7 MSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTA 279
            MSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLG+VEE+VTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT+
Sbjct:    1 MSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGEVEESVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTS 91
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BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A7S2FJT0_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJT0_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.710e-47
Identity = 75/92 (81.52%), Postives = 87/92 (94.57%), Query Frame = 1 
Query:    1 INMSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT 276
            + MS++ PLDLIRLS+DERI+VKC+GDRELRGKLHA+DQHLNMVLGDVEE VTT+EIDE+T EEI++TSKR IEMLFVRGD+VILVSPPLRT
Sbjct:   17 VTMSVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEDTSEEIIRTSKRMIEMLFVRGDVVILVSPPLRT 108
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BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A7S2GP21_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GP21_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.240e-46
Identity = 73/89 (82.02%), Postives = 85/89 (95.51%), Query Frame = 1 
Query:   10 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT 276
            S++ PLDLIRLS+DERI+VKC+GDRELRGKLHA+DQHLNMVLGDVEE VTT+E+DE+T EEI++TSKR IEMLFVRGD+VILVSPPLRT
Sbjct:   13 SVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQELDEDTNEEIIRTSKRMIEMLFVRGDVVILVSPPLRT 101
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BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A4D9CUN8_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUN8_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.000e-45
Identity = 71/90 (78.89%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:   10 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTA 279
            S+D PLDLIRLS++ERI+VKC+G+RELRGKLHAFD+HLNM+LG+VEE VTT EIDEET+EEI++TS+R +EMLFVRGD+VILVSPPLRTA
Sbjct:    4 SVDEPLDLIRLSLEERIYVKCRGERELRGKLHAFDRHLNMILGEVEETVTTPEIDEETDEEIIRTSRRTVEMLFVRGDVVILVSPPLRTA 93
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BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A7S0G6S6_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S0G6S6_9STRA)

HSP 1 Score: 147 bits (372), Expect = 4.050e-44
Identity = 70/91 (76.92%), Postives = 85/91 (93.41%), Query Frame = 1 
Query:    7 MSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTA 279
            + ++ PLDLIRLSIDER++VKC+GDRELRGKLHA+DQHLNMVLG+VEE VTT E+DEETEEEIV+ + R+++MLFVRGDIV+LVSPPLRTA
Sbjct:   32 VKMEEPLDLIRLSIDERVYVKCRGDRELRGKLHAYDQHLNMVLGEVEETVTTHEVDEETEEEIVRKATRSVKMLFVRGDIVVLVSPPLRTA 122
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BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: D7FXS6_ECTSI (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS6_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 4.780e-44
Identity = 71/89 (79.78%), Postives = 84/89 (94.38%), Query Frame = 1 
Query:   10 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT 276
            S++ PLDLIRLS+DERI VKC+G+RELRGKLH++DQHLNMVLGDVEE VTT E+DE+T EEIV+TSKR+IEMLFVRGD+VILVSPP+RT
Sbjct:    4 SVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRT 92
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BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A7S0AM25_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AM25_9STRA)

HSP 1 Score: 144 bits (364), Expect = 6.910e-43
Identity = 71/92 (77.17%), Postives = 83/92 (90.22%), Query Frame = 1 
Query:    4 NMSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTA 279
            N +++ PLDLIRLSIDER++VKC+ DRELRGKLHAFDQHLNMVLG+VEE VT+ EIDEET+EEIVK + R + MLFVRGDIV+LVSPPLRTA
Sbjct:   32 NPTMEEPLDLIRLSIDERVYVKCRNDRELRGKLHAFDQHLNMVLGEVEETVTSYEIDEETDEEIVKKATRQVGMLFVRGDIVVLVSPPLRTA 123
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BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A067C375_SAPPC (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C375_SAPPC)

HSP 1 Score: 141 bits (356), Expect = 4.450e-42
Identity = 66/89 (74.16%), Postives = 81/89 (91.01%), Query Frame = 1 
Query:   10 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT 276
            SID PLDLI+LS+DERI+VKC+GDRELRGKL A+DQHLNM+L DVEE VT+ E+D+ET EEIVK +KR +EMLFVRGD+++LV+PPLRT
Sbjct:    3 SIDEPLDLIKLSLDERIYVKCRGDRELRGKLQAYDQHLNMILSDVEETVTSHEVDQETYEEIVKQAKRQVEMLFVRGDVIVLVAPPLRT 91
[Close]
BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: A0A0M0JVC1_9EUKA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVC1_9EUKA)

HSP 1 Score: 141 bits (355), Expect = 6.710e-42
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:   22 PLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT 276
            P+DL+RLS+DERI VK +GDRELRGKLHA+DQHLNMVLGDVEE VTT E+DEET EEI+KTSKR IEMLFVRGD VIL+SPPLRT
Sbjct:    9 PIDLVRLSLDERIHVKMRGDRELRGKLHAYDQHLNMVLGDVEEVVTTVEVDEETYEEIIKTSKRQIEMLFVRGDGVILISPPLRT 93
[Close]
BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Match: B7GDI5_PHATC (U6 snRNA-associated Sm-like protein LSm3 n=5 Tax=Bacillariophyta TaxID=2836 RepID=B7GDI5_PHATC)

HSP 1 Score: 140 bits (354), Expect = 8.210e-42
Identity = 67/87 (77.01%), Postives = 78/87 (89.66%), Query Frame = 1 
Query:   16 DTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRT 276
            + PLDLIRLSIDER++VKC+GDRELRGKLH +DQHLNM+LGDVEE VT+ EIDEET+E+IVK   R + MLFVRGDIV+LVSPPLRT
Sbjct:    2 EEPLDLIRLSIDERVYVKCRGDRELRGKLHGYDQHLNMILGDVEETVTSTEIDEETDEQIVKKQTRKVGMLFVRGDIVVLVSPPLRT 88
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10236.280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3M171_9STRA2.710e-5496.70U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=S... [more]
A0A7S2FJT0_9STRA1.710e-4781.52U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=F... [more]
A0A7S2GP21_9STRA3.240e-4682.02U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D... [more]
A0A4D9CUN8_9STRA1.000e-4578.89U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=N... [more]
A0A7S0G6S6_9STRA4.050e-4476.92U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=B... [more]
D7FXS6_ECTSI4.780e-4479.78U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E... [more]
A0A7S0AM25_9STRA6.910e-4377.17U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=M... [more]
A0A067C375_SAPPC4.450e-4274.16U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=S... [more]
A0A0M0JVC1_9EUKA6.710e-4282.35U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=C... [more]
B7GDI5_PHATC8.210e-4277.01U6 snRNA-associated Sm-like protein LSm3 n=5 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10236contigD-dudresnayi_contig10236:944..1419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue4e-33
Seed eggNOG ortholog2880.D7FXS6
Preferred nameLSM3
KEGG koko:K12622
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000781,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005688,GO:0005694,GO:0005697,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017069,GO:0017070,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030629,GO:0031974,GO:0031981,GO:0032991,GO:0033962,GO:0034470,GO:0034622,GO:0034641,GO:0034655,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070034,GO:0070925,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0098687,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1990726,GO:1990904
EggNOG free text desc.cytoplasmic mRNA processing body assembly
EggNOG OGsKOG3460@1,KOG3460@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Exons3
Model size282
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10236.280.1prot_D-dudresnayi_contig10236.280.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10236 944..1413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.614472-CDS-D-dudresnayi_contig10236:943..10241622927524.614472-CDS-D-dudresnayi_contig10236:943..1024Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10236 944..1024 -
1690556791.9494226-CDS-D-dudresnayi_contig10236:943..10241690556791.9494226-CDS-D-dudresnayi_contig10236:943..1024Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10236 944..1024 -
1622927524.6307638-CDS-D-dudresnayi_contig10236:1094..11901622927524.6307638-CDS-D-dudresnayi_contig10236:1094..1190Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10236 1095..1190 -
1690556791.9644299-CDS-D-dudresnayi_contig10236:1094..11901690556791.9644299-CDS-D-dudresnayi_contig10236:1094..1190Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10236 1095..1190 -
1622927524.6467943-CDS-D-dudresnayi_contig10236:1314..14131622927524.6467943-CDS-D-dudresnayi_contig10236:1314..1413Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10236 1315..1413 -
1690556791.9836335-CDS-D-dudresnayi_contig10236:1314..14131690556791.9836335-CDS-D-dudresnayi_contig10236:1314..1413Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10236 1315..1413 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.6625392-UTR-D-dudresnayi_contig10236:1413..14191622927524.6625392-UTR-D-dudresnayi_contig10236:1413..1419Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10236 1414..1419 -
1690556792.0013247-UTR-D-dudresnayi_contig10236:1413..14191690556792.0013247-UTR-D-dudresnayi_contig10236:1413..1419Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10236 1414..1419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10236.280.1

>prot_D-dudresnayi_contig10236.280.1 ID=prot_D-dudresnayi_contig10236.280.1|Name=mRNA_D-dudresnayi_contig10236.280.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=92bp
MSIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGDVEEAV
TTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTA*
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mRNA from alignment at D-dudresnayi_contig10236:944..1419-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10236.280.1 ID=mRNA_D-dudresnayi_contig10236.280.1|Name=mRNA_D-dudresnayi_contig10236.280.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=476bp|location=Sequence derived from alignment at D-dudresnayi_contig10236:944..1419- (Desmarestia dudresnayi DdudBR16 monoicous)
ATCAACATGTCTATCGATACACCCTTAGATTTAATTAGATTGTCCATTGA
TGAGCGGATATTTGTTAAGTGCAAAGGAGATAGAGAACTGCGTGGGAAAC
TTCATGTATGTGACTTTTGTTGGAGATTTATTCCTTGCAGCCTATTACTG
TACTCATGATCTAGCTTCGTGATATTCTAGCAAGTTTTTTAAACATAAAT
TTACTTATTTGTATTTGATATTTTTACAGGCGTTTGATCAGCACTTAAAT
ATGGTACTGGGCGATGTGGAGGAGGCTGTAACCACTAGAGAAATCGATGA
AGAGACTGAGGAGGAAATTGTTAAGGTAGCAAACACATATATAAATATAT
AATATATCCTATGATATTTTTAATAATATACAATTTTATATGTAGACATC
AAAACGCAATATTGAAATGCTTTTTGTCAGAGGAGACATCGTGATTTTGG
TCTCGCCGCCTCTGCGGACAGCGTAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10236:944..1419-

>mRNA_D-dudresnayi_contig10236.280.1 ID=mRNA_D-dudresnayi_contig10236.280.1|Name=mRNA_D-dudresnayi_contig10236.280.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at D-dudresnayi_contig10236:944..1419- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCTATCGATACACCCTTAGATTTAATTAGATTGTCCATTGATGAGCG
GATATTTGTTAAGTGCAAAGGAGATAGAGAACTGCGTGGGAAACTTCATA
TGTCTATCGATACACCCTTAGATTTAATTAGATTGTCCATTGATGAGCGG
ATATTTGTTAAGTGCAAAGGAGATAGAGAACTGCGTGGGAAACTTCATGC
GTTTGATCAGCACTTAAATATGGTACTGGGCGATGTGGAGGAGGCTGTAA
CCACTAGAGAAATCGATGAAGAGACTGAGGAGGAAATTGTTAAGGCGTTT
GATCAGCACTTAAATATGGTACTGGGCGATGTGGAGGAGGCTGTAACCAC
TAGAGAAATCGATGAAGAGACTGAGGAGGAAATTGTTAAGACATCAAAAC
GCAATATTGAAATGCTTTTTGTCAGAGGAGACATCGTGATTTTGGTCTCG
CCGCCTCTGCGGACAGCGTAAACATCAAAACGCAATATTGAAATGCTTTT
TGTCAGAGGAGACATCGTGATTTTGGTCTCGCCGCCTCTGCGGACAGCGT
AA
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