mRNA_D-dudresnayi_contig10182.223.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10182.223.1
Unique NamemRNA_D-dudresnayi_contig10182.223.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10182.223.1 vs. uniprot
Match: A0A6H5JIG8_9PHAE (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG8_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.560e-19
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:  130 TAVIQFYSNHETDDPRFQGFGVVKEDKMEDLQTMVDSFTAPALAAALRDRETTLHSCAHMLEK 318
            TAVIQF+S  E    RF+GFGV+KEDK ED+ T+V+SFTAPALAAALRDRET LH CAH+LE+
Sbjct:  252 TAVIQFHSLKEAALRRFEGFGVIKEDKAEDIHTLVESFTAPALAAALRDRETALHMCAHLLEQ 314
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BLAST of mRNA_D-dudresnayi_contig10182.223.1 vs. uniprot
Match: D7FSP6_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP6_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 7.540e-19
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:  130 TAVIQFYSNHETDDPRFQGFGVVKEDKMEDLQTMVDSFTAPALAAALRDRETTLHSCAHMLEK 318
            TAVIQF+S  E    RF+G GV+KEDK ED+ T+V+SFTAPALAAALRDRET LH CAH+LE+
Sbjct:  262 TAVIQFHSLQEAALRRFEGLGVIKEDKAEDIHTLVESFTAPALAAALRDRETALHMCAHLLEQ 324
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BLAST of mRNA_D-dudresnayi_contig10182.223.1 vs. uniprot
Match: A0A7S3Y7X1_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Y7X1_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 1.280e-10
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:  181 QGFGVVKEDKMEDLQTMVDSFTAPALAAALRDRETTLHSCAHMLEK 318
            +G+GV+ EDK  DL+ +VD+FTAPALAAALRDRE TLH CA +LE+
Sbjct:  107 KGYGVIHEDKARDLKHLVDNFTAPALAAALRDREETLHICATLLEE 152
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BLAST of mRNA_D-dudresnayi_contig10182.223.1 vs. uniprot
Match: A0A7S0DGZ8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DGZ8_9EUKA)

HSP 1 Score: 65.1 bits (157), Expect = 3.390e-10
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:  181 QGFGVVKEDKMEDLQTMVDSFTAPALAAALRDRETTLHSCAHMLEK 318
            +G+GVV EDK  DL+ +VD+FTAPALAAALRDRE TLH C+ +LE+
Sbjct:  102 KGYGVVFEDKRRDLKHLVDNFTAPALAAALRDREETLHICSTLLEE 147
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BLAST of mRNA_D-dudresnayi_contig10182.223.1 vs. uniprot
Match: A0A7S2MRL7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MRL7_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 9.910e-6
Identity = 22/41 (53.66%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:  190 GVVKEDKMEDLQTMVDSFTAPALAAALRDRETTLHSCAHML 312
            GV++ED +ED++ +V+++T PALA+ALRDRE  L  CA++L
Sbjct:   34 GVLREDPVEDMRLLVENYTVPALASALRDREEILQLCANLL 74
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BLAST of mRNA_D-dudresnayi_contig10182.223.1 vs. uniprot
Match: A0A7S4IQK5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IQK5_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 8.600e-5
Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:  190 GVVKEDKMEDLQTMVDSFTAPALAAALRDRETTLHSCAHMLEK 318
            GVV+ D  ED++ M++++T PALA+ALRDRE  L  CA +L +
Sbjct:  158 GVVRTDPGEDMRMMIENYTVPALASALRDREDVLQQCASLLAR 200
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10182.223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JIG8_9PHAE1.560e-1971.43Nudix hydrolase domain-containing protein n=1 Tax=... [more]
D7FSP6_ECTSI7.540e-1969.84Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S3Y7X1_9EUKA1.280e-1067.39Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A7S0DGZ8_9EUKA3.390e-1067.39Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S2MRL7_9STRA9.910e-653.66Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S4IQK5_9STRA8.600e-551.16Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10182contigD-dudresnayi_contig10182:8487..9874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue2.3e-16
Seed eggNOG ortholog2880.D7FSP6
KEGG koko:K18665
EggNOG free text desc.CoA pyrophosphatase activity
EggNOG OGsCOG0494@1,KOG3069@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNUDIX hydrolase domain
Ec32 orthologEc-03_003030.1
Exons2
Model size319
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927517.5328097-CDS-D-dudresnayi_contig10182:8486..86001622927517.5328097-CDS-D-dudresnayi_contig10182:8486..8600Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10182 8487..8600 -
1690556789.1424642-CDS-D-dudresnayi_contig10182:8486..86001690556789.1424642-CDS-D-dudresnayi_contig10182:8486..8600Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10182 8487..8600 -
1622927517.544566-CDS-D-dudresnayi_contig10182:9670..98741622927517.544566-CDS-D-dudresnayi_contig10182:9670..9874Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10182 9671..9874 -
1690556789.1541069-CDS-D-dudresnayi_contig10182:9670..98741690556789.1541069-CDS-D-dudresnayi_contig10182:9670..9874Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10182 9671..9874 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10182.223.1prot_D-dudresnayi_contig10182.223.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10182 8487..9874 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10182.223.1

>prot_D-dudresnayi_contig10182.223.1 ID=prot_D-dudresnayi_contig10182.223.1|Name=mRNA_D-dudresnayi_contig10182.223.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=106bp
MVILYIFFVLEHEWVEEEEEMAAAWLGGKEKQKEEEEEEEDEDTAVIQFY
SNHETDDPRFQGFGVVKEDKMEDLQTMVDSFTAPALAAALRDRETTLHSC
AHMLEK
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mRNA from alignment at D-dudresnayi_contig10182:8487..9874-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10182.223.1 ID=mRNA_D-dudresnayi_contig10182.223.1|Name=mRNA_D-dudresnayi_contig10182.223.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1388bp|location=Sequence derived from alignment at D-dudresnayi_contig10182:8487..9874- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTAATATTATATATATTTTTTGTTTTAGAGCACGAGTGGGTGGAGGA
GGAGGAGGAGATGGCGGCGGCATGGCTGGGGGGGAAGGAAAAACAGAAAG
AGGAGGAGGAGGAGGAGGAGGATGAAGACACCGCGGTCATCCAGTTTTAC
TCGAACCACGAAACGGACGACCCGCGGTTTCAAGGCTTTGGGGTCGTCAA
AGAGGTGCGAAGGGAACCACCATGTGAGGGAGGGAGGGGACGAGGGAGGA
AGGGGCAGGCAAAACAAAATAACAAAAAAAAAATTAAAACAAGATCACCC
TTCTTTTTTTTTTTTTCCTTTTGCTTTTTTATTATATTAGTGCAACAAAG
ACACACTTCTGTCGTCGACAGGATCGTTTTTTTTTATTAGTGGGCTGTTC
AGCATTTCGGAACAATTTTTCTAGAACCAACCCTCAACCCTATAACCTAA
GCGACCACACTATGATAACAACCAAAAACCTCCCTAAATATACTGCTAAC
TTTCTTGTTGAGCGGATTGGTTTGTTTTTTTTCCGCGACATACAAGTTTC
GGGGGGTGTTCTTGTGAGAGAATTGACAGATTAGTTTGCTGAACGATCGG
TTTGGTTTGGTTTGACTTGGCTTGGTTTGGTATGGCCTGGGCTGGTGTGC
TTTGGTTTGGTTCTGTTCTGTTTTGTTTTTGTTTTTGTTTGGCTCGTTTT
CAGTAGGCTTAGCAATGAATGATGAATGATGTTGTAGAACAGAACTTTAC
AGGAATTTTTCAGAGGTTTTGACTTGATATTAGTATAGGTGTGCTCGTTA
GGGTAAGGGTTAGGGTTAGTGGTAGCACGTTCCGAATTTGCTGAACAGCC
CACTTTGGTACTATTCATAAAATAAAACAAACAAAAAAAGTTCCGTCCTG
CAACATGTTGTGGGGGCTCCTTGGTTTGTTTTGACTGGTGATTTAGCTGG
GCGTGGTTTGGTGTGGTTATCATTGGTTGTTTGGTATGCTCATTTTGTAC
ACTAACAACTGATTGGTCTTTGTTATTGATATCATTAAATATGGAAATAA
TACTAACAATACTTCGAGAACAATGAAAACTAACCAGCTCTACACATCCA
ACCAACCACCTCAATCAACCGCACAGTCAATCACACTGTCAACGTATTCA
ATCAACCAACCAATGGATCAAACAATCAATAACCAATGAACCAACCAATC
AACAACCCAATCAATCAATCAACCAAACAAGAACCCAATCACTCAAACAA
TCAACAATTTGATGTTGTTCCCAGGACAAGATGGAAGACCTCCAGACCAT
GGTTGACAGCTTCACGGCGCCGGCCCTTGCTGCGGCGTTGCGGGACAGGG
AGACCACGCTCCACAGCTGCGCGCACATGCTCGAAAAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10182:8487..9874-

>mRNA_D-dudresnayi_contig10182.223.1 ID=mRNA_D-dudresnayi_contig10182.223.1|Name=mRNA_D-dudresnayi_contig10182.223.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at D-dudresnayi_contig10182:8487..9874- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTAATATTATATATATTTTTTGTTTTAGAGCACGAGTGGGTGGAGGA
GGAGGAGGAGATGGCGGCGGCATGGCTGGGGGGGAAGGAAAAACAGAAAG
AGGAGGAGGAGGAGGAGGAGGATGAAGACACCGCGGTCATCCAGTTTTAC
TCGAACCACGAAACGGACGACCCGCGGTTTCAAGGCTTTGGGGTCGTCAA
AGAGATGGTAATATTATATATATTTTTTGTTTTAGAGCACGAGTGGGTGG
AGGAGGAGGAGGAGATGGCGGCGGCATGGCTGGGGGGGAAGGAAAAACAG
AAAGAGGAGGAGGAGGAGGAGGAGGATGAAGACACCGCGGTCATCCAGTT
TTACTCGAACCACGAAACGGACGACCCGCGGTTTCAAGGCTTTGGGGTCG
TCAAAGAGGACAAGATGGAAGACCTCCAGACCATGGTTGACAGCTTCACG
GCGCCGGCCCTTGCTGCGGCGTTGCGGGACAGGGAGACCACGCTCCACAG
CTGCGCGCACATGCTCGAAAAGGACAAGATGGAAGACCTCCAGACCATGG
TTGACAGCTTCACGGCGCCGGCCCTTGCTGCGGCGTTGCGGGACAGGGAG
ACCACGCTCCACAGCTGCGCGCACATGCTCGAAAAG
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