mRNA_D-dudresnayi_contig10158.209.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10158.209.1
Unique NamemRNA_D-dudresnayi_contig10158.209.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10158.209.1 vs. uniprot
Match: D8LTM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM0_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.970e-38
Identity = 71/130 (54.62%), Postives = 91/130 (70.00%), Query Frame = 1 
Query:    1 GLTYWFNGINGYSCDALATVTGACLSVSNAITFVHLFVLSNDLHERNTRWETCRWIGLLATAFNWGTLVVAQLMVTT-EEDEGGIDG-IRCVLQVDVVAFRLKWAAQLLNELFQAVAFILPLRCHLAGAA 384
            GL YWFNGI GY C A +TV GA LS SNA+ F+HLF+LSN +H  N+RW+  RW+G++ T F+W  LV  +   T  +E+ GG  G  RCV  VD +A  +KW AQLLN+LFQ VAF++PLR  +AGAA
Sbjct:   62 GLAYWFNGIGGYDCLAFSTVMGASLSASNAMAFIHLFILSNSMHRANSRWKHFRWLGVIITVFHWVALVALEGTRTAGKEEHGGCAGESRCVTDVDGLALAVKWVAQLLNQLFQTVAFLVPLRMPVAGAA 191
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BLAST of mRNA_D-dudresnayi_contig10158.209.1 vs. uniprot
Match: A0A6H5JF49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF49_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.120e-34
Identity = 66/130 (50.77%), Postives = 86/130 (66.15%), Query Frame = 1 
Query:    1 GLTYWFNGINGYSCDALATVTGACLSVSNAITFVHLFVLSNDLHERNTRWETCRWIGLLATAFNWGTLVVAQLMVTT-EEDEGGIDG-IRCVLQVDVVAFRLKWAAQLLNELFQAVAFILPLRCHLAGAA 384
            GL YWFNGI GY C A +T+ GA LS SNA+ F+HLF+LSN +H  N+RW+  RW G++   F+W  LV  +   T  +E+ GG  G  RCV  VD +A  +KW  QLLN++FQ VAF++PLR   A AA
Sbjct:   19 GLAYWFNGIGGYDCFAFSTIMGASLSASNAMGFIHLFILSNSMHRANSRWKHFRWFGVIIMVFHWVALVALEGTRTAGKEERGGCAGESRCVTDVDGLALTVKWIMQLLNQMFQTVAFLVPLRMPAAEAA 148
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BLAST of mRNA_D-dudresnayi_contig10158.209.1 vs. uniprot
Match: A0A835ZKC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKC7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.060e-13
Identity = 38/102 (37.25%), Postives = 55/102 (53.92%), Query Frame = 1 
Query:    4 LTYWFNGINGYSCDALATVTGACLSVSNAITFVHLFVLSNDLHERNTRWETCRWIGLLATAFNWGTLVVAQLMVTTEEDEGGIDG--IRCVLQVDVVAFRLK 303
            +T WF G+   SC A+  V G CLS SNA+ FVHLF+ ++  ++ N RW   R   +++   NW  LVV   ++TT+E      G   RC    +   F+LK
Sbjct:   61 ITLWFTGLGSISCMAIQVVNGLCLSSSNALAFVHLFLKADASNKLNPRWPVWRTAAIMSIVANWIILVVVHALITTKEAPNPNLGGEARCKWTFEEYTFKLK 162
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10158.209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTM0_ECTSI1.970e-3854.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF49_9PHAE1.120e-3450.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZKC7_9STRA3.060e-1337.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10158contigD-dudresnayi_contig10158:9500..10306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue4.2e-25
Seed eggNOG ortholog2880.D7FXM9
EggNOG OGs2EKQU@1,2SQJE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size384
Cds size384
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10158.209.1prot_D-dudresnayi_contig10158.209.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10158 9500..10306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927516.0824554-CDS-D-dudresnayi_contig10158:9499..96451622927516.0824554-CDS-D-dudresnayi_contig10158:9499..9645Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10158 9500..9645 +
1690556788.228752-CDS-D-dudresnayi_contig10158:9499..96451690556788.228752-CDS-D-dudresnayi_contig10158:9499..9645Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10158 9500..9645 +
1622927516.1012712-CDS-D-dudresnayi_contig10158:9890..100801622927516.1012712-CDS-D-dudresnayi_contig10158:9890..10080Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10158 9891..10080 +
1690556788.2408726-CDS-D-dudresnayi_contig10158:9890..100801690556788.2408726-CDS-D-dudresnayi_contig10158:9890..10080Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10158 9891..10080 +
1622927516.1207368-CDS-D-dudresnayi_contig10158:10258..103061622927516.1207368-CDS-D-dudresnayi_contig10158:10258..10306Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10158 10259..10306 +
1690556788.2499397-CDS-D-dudresnayi_contig10158:10258..103061690556788.2499397-CDS-D-dudresnayi_contig10158:10258..10306Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10158 10259..10306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10158.209.1

>prot_D-dudresnayi_contig10158.209.1 ID=prot_D-dudresnayi_contig10158.209.1|Name=mRNA_D-dudresnayi_contig10158.209.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=128bp
GLTYWFNGINGYSCDALATVTGACLSVSNAITFVHLFVLSNDLHERNTRW
ETCRWIGLLATAFNWGTLVVAQLMVTTEEDEGGIDGIRCVLQVDVVAFRL
KWAAQLLNELFQAVAFILPLRCHLAGAA
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mRNA from alignment at D-dudresnayi_contig10158:9500..10306+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10158.209.1 ID=mRNA_D-dudresnayi_contig10158.209.1|Name=mRNA_D-dudresnayi_contig10158.209.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=807bp|location=Sequence derived from alignment at D-dudresnayi_contig10158:9500..10306+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGGTTGACGTACTGGTTTAACGGCATTAACGGCTACAGCTGCGATGCGCT
GGCGACGGTAACCGGCGCGTGCCTCTCCGTCAGCAACGCGATTACGTTCG
TGCACCTCTTCGTCTTGTCCAACGACCTCCACGAGAGAAACACGAGGTAC
TTAGTTGCGCACAGCCTTGGATCGCTCAATGCATGTCAATACTAATTGTT
GTCCAGGAACAGATAAAACTTCGGTAGGTTCGTGCTTCAATGTATACAGT
GGGTCTTTCAACGGCTTAGGCGGGACCCTTGGGGTTTTCGTTTTATTTTT
TCCAATAATAGCATCAACATGGGCTGTTTTCTATTAGAGTCAACCCTAAC
CTTAGCCTTGACGATCCCCTTTGGCAACGCACAATCGCAAGGTGGGAAAC
GTGCCGGTGGATCGGGCTACTCGCGACGGCGTTCAACTGGGGTACGCTGG
TAGTGGCTCAGCTCATGGTGACGACGGAGGAAGACGAAGGAGGCATCGAC
GGCATACGGTGCGTGCTGCAAGTCGACGTCGTCGCTTTCCGGCTGAAGTG
GGCTGCGCAGCTTCTCAACGAGCTATTTCAGGTACGATACGCATGGTTCG
GCTATCTCCTTGCCAATGAGCGACGGATGCACGGAGTTGTCCAACGATAG
GGCGGGTGCTAAATACTTCTGGAATTGGGATTGGCGGTTCAAAATTTCCC
CCTGGCGAAGGTCAAATTATTTTATGTTTCCCTCCCCCCTCCTCCCCCCG
GGGTTTCAGGCGGTGGCGTTTATCCTCCCGCTGCGGTGTCATCTGGCGGG
CGCCGCT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10158:9500..10306+

>mRNA_D-dudresnayi_contig10158.209.1 ID=mRNA_D-dudresnayi_contig10158.209.1|Name=mRNA_D-dudresnayi_contig10158.209.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at D-dudresnayi_contig10158:9500..10306+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGGTTGACGTACTGGTTTAACGGCATTAACGGCTACAGCTGCGATGCGCT
GGCGACGGTAACCGGCGCGTGCCTCTCCGTCAGCAACGCGATTACGTTCG
TGCACCTCTTCGTCTTGTCCAACGACCTCCACGAGAGAAACACGAGGGGT
TGACGTACTGGTTTAACGGCATTAACGGCTACAGCTGCGATGCGCTGGCG
ACGGTAACCGGCGCGTGCCTCTCCGTCAGCAACGCGATTACGTTCGTGCA
CCTCTTCGTCTTGTCCAACGACCTCCACGAGAGAAACACGAGGTGGGAAA
CGTGCCGGTGGATCGGGCTACTCGCGACGGCGTTCAACTGGGGTACGCTG
GTAGTGGCTCAGCTCATGGTGACGACGGAGGAAGACGAAGGAGGCATCGA
CGGCATACGGTGCGTGCTGCAAGTCGACGTCGTCGCTTTCCGGCTGAAGT
GGGCTGCGCAGCTTCTCAACGAGCTATTTCAGGTGGGAAACGTGCCGGTG
GATCGGGCTACTCGCGACGGCGTTCAACTGGGGTACGCTGGTAGTGGCTC
AGCTCATGGTGACGACGGAGGAAGACGAAGGAGGCATCGACGGCATACGG
TGCGTGCTGCAAGTCGACGTCGTCGCTTTCCGGCTGAAGTGGGCTGCGCA
GCTTCTCAACGAGCTATTTCAGGCGGTGGCGTTTATCCTCCCGCTGCGGT
GTCATCTGGCGGGCGCCGCTGCGGTGGCGTTTATCCTCCCGCTGCGGTGT
CATCTGGCGGGCGCCGCT
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