mRNA_D-dudresnayi_contig10140.183.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10140.183.1
Unique NamemRNA_D-dudresnayi_contig10140.183.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10140.183.1 vs. uniprot
Match: D8LFT1_ECTSI (Cation efflux family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT1_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 2.010e-30
Identity = 64/80 (80.00%), Postives = 70/80 (87.50%), Query Frame = 2 
Query:  320 DKTSGRLAIFALLNLVYVVLQLAGSLAFDSLALMSDGFHNLSDVAAILMAMYIHKLQRRRCPENAAGGSDELPHGFKRAE 559
            DK SGRLAIF LLNL YVVLQLAG++AF SLALMSDGFHNLSDVAAI MAMYIH+LQRR CPEN  GG+D LP G+KR+E
Sbjct:   75 DKMSGRLAIFGLLNLGYVVLQLAGAMAFGSLALMSDGFHNLSDVAAIGMAMYIHRLQRRPCPENEDGGTDRLPFGYKRSE 154
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BLAST of mRNA_D-dudresnayi_contig10140.183.1 vs. uniprot
Match: A0A836CI90_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI90_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.230e-10
Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 2 
Query:  323 KTSGRLAIFALLNLVYVVLQLAGSLAFDSLALMSDGFHNLSDVAAILMAMYIHKLQRRRCPENAAGGSDELPHGFKRAE 559
            ++  +L +   L   +V+ QL  S  F SLAL+SDG HNLSDVAA+L+A+Y+H+L+ R  P +AA     LPHG+KRA+
Sbjct:    4 RSDRKLRLLCGLTAAHVLAQLWVSARFGSLALLSDGIHNLSDVAALLLALYMHRLEAR--PLDAAARR-ALPHGYKRAD 79
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BLAST of mRNA_D-dudresnayi_contig10140.183.1 vs. uniprot
Match: A8TJK5_9PROT (Cation efflux system protein n=1 Tax=alpha proteobacterium BAL199 TaxID=331869 RepID=A8TJK5_9PROT)

HSP 1 Score: 58.9 bits (141), Expect = 5.100e-7
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 2 
Query:  332 GRLAIFALLNLVYVVLQLAGSLAFDSLALMSDGFHNLSDVAAILMAMYIHKLQRRRCPENAAGGSDELPHGFKRAE 559
            GRLA    +N+V  V+Q+AG +   SLAL++D  HNLSD AA+ +A++  K+ RR       G  + + +G++RAE
Sbjct:   30 GRLAWAVAVNVVLTVVQIAGGVVSGSLALVADAIHNLSDAAALGIALFARKVARR-------GADERMTYGYRRAE 98
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BLAST of mRNA_D-dudresnayi_contig10140.183.1 vs. uniprot
Match: A0A6I0E3S4_9BACT (Cation transporter n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A6I0E3S4_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.030e-5
Identity = 30/85 (35.29%), Postives = 55/85 (64.71%), Query Frame = 2 
Query:  305 EVKEGDKTSGRLAIFAL-LNLVYVVLQLAGSLAFDSLALMSDGFHNLSDVAAILMAMYIHKLQRRRCPENAAGGSDELPHGFKRA 556
            ++K+  +   R  I  + +NLVYVV+++A  + ++SL+L+SD  HNLSDVAA+ +AM   +L +R+        +D+  +G+K++
Sbjct:    5 QIKDNREALNRAFIIGIVINLVYVVVEVAAGIYYNSLSLISDAGHNLSDVAALGLAMLAFRLAKRKA-------NDKFTYGYKKS 82
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BLAST of mRNA_D-dudresnayi_contig10140.183.1 vs. uniprot
Match: A0A8J4Q0R0_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q0R0_9MYCE)

HSP 1 Score: 54.3 bits (129), Expect = 2.490e-5
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 2 
Query:  353 LLNLVYVVLQLAGSLAFDSLALMSDGFHNLSDVAAILMAMYIHKLQRRRCPENAAGGSDELPHGFKRAE 559
            +L+LVYV+ +LA +L  +SLAL+SDGFHNLSDV ++ +A +  K   R          D + +G+ R E
Sbjct:   32 ILSLVYVICELAAALYLNSLALLSDGFHNLSDVVSLYIAWWAQKAAER-------DSDDIMSYGWARTE 93
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BLAST of mRNA_D-dudresnayi_contig10140.183.1 vs. uniprot
Match: UPI001E453C44 (cation diffusion facilitator family transporter n=1 Tax=Sulfurimonas sp. HSL-3221 TaxID=2894755 RepID=UPI001E453C44)

HSP 1 Score: 52.4 bits (124), Expect = 8.830e-5
Identity = 29/80 (36.25%), Postives = 44/80 (55.00%), Query Frame = 2 
Query:  320 DKTSGRLAIFALLNLVYVVLQLAGSLAFDSLALMSDGFHNLSDVAAILMAMYIHKLQRRRCPENAAGGSDELPHGFKRAE 559
            D +  +L I   LN++  + QLAG L   SLAL+SD  HN SDV A+L++ + H++  +    +          G+KRAE
Sbjct:    9 DISGTKLLIAVALNILITLAQLAGGLIAGSLALLSDALHNFSDVMALLISWFAHRISHKEADSSKT-------FGYKRAE 81
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BLAST of mRNA_D-dudresnayi_contig10140.183.1 vs. uniprot
Match: A0A2W7RJ32_9BACT (Cobalt-zinc-cadmium efflux system protein n=1 Tax=Hydrotalea sandarakina TaxID=1004304 RepID=A0A2W7RJ32_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 8.880e-5
Identity = 24/57 (42.11%), Postives = 39/57 (68.42%), Query Frame = 2 
Query:  353 LLNLVYVVLQLAGSLAFDSLALMSDGFHNLSDVAAILMAMYIHKLQRRRCPENAAGG 523
            +LN V+V++++     ++S+AL+SD  HNLSDVA++L+AM   KL + +  EN   G
Sbjct:   24 ILNTVFVIIEVISGFYYNSMALLSDAGHNLSDVASLLLAMLAFKLSKSKATENFTYG 80
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10140.183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LFT1_ECTSI2.010e-3080.00Cation efflux family protein n=1 Tax=Ectocarpus si... [more]
A0A836CI90_9STRA1.230e-1048.10Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A8TJK5_9PROT5.100e-740.79Cation efflux system protein n=1 Tax=alpha proteob... [more]
A0A6I0E3S4_9BACT1.030e-535.29Cation transporter n=1 Tax=Bacteroidales bacterium... [more]
A0A8J4Q0R0_9MYCE2.490e-542.03Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
UPI001E453C448.830e-536.25cation diffusion facilitator family transporter n=... [more]
A0A2W7RJ32_9BACT8.880e-542.11Cobalt-zinc-cadmium efflux system protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10140contigD-dudresnayi_contig10140:4317..5274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue1.4e-26
Seed eggNOG ortholog2880.D8LFT1
Preferred nameZRC1
KEGG koko:K14688,ko:K14692
KEGG TC2.A.4.2,2.A.4.4.3,2.A.4.4.5
KEGG Pathwayko04978,map04978
GOsGO:0000041,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005385,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006824,GO:0006829,GO:0006873,GO:0006875,GO:0006877,GO:0006882,GO:0006950,GO:0008150,GO:0008324,GO:0009636,GO:0009966,GO:0009967,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010646,GO:0010647,GO:0012505,GO:0015075,GO:0015087,GO:0015318,GO:0016020,GO:0016021,GO:0016323,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0022857,GO:0022890,GO:0023051,GO:0023056,GO:0030001,GO:0030003,GO:0031090,GO:0031224,GO:0031984,GO:0032879,GO:0034220,GO:0040026,GO:0040028,GO:0042175,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046578,GO:0046579,GO:0046686,GO:0046873,GO:0046915,GO:0046916,GO:0048518,GO:0048522,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051056,GO:0051057,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051716,GO:0055065,GO:0055068,GO:0055069,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0061062,GO:0061063,GO:0061088,GO:0061687,GO:0065007,GO:0065008,GO:0070838,GO:0070887,GO:0071241,GO:0071248,GO:0071276,GO:0071294,GO:0071577,GO:0071585,GO:0071944,GO:0072503,GO:0072507,GO:0072509,GO:0072511,GO:0097237,GO:0097501,GO:0098588,GO:0098590,GO:0098655,GO:0098660,GO:0098662,GO:0098754,GO:0098771,GO:0098805,GO:0098827,GO:0098849,GO:0098852,GO:1902531,GO:1902533,GO:1990170,GO:1990748,GO:2000026
EggNOG free text desc.regulation of zinc ion transport
EggNOG OGsCOG1230@1,KOG1483@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size559
Cds size519
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10140.183.1prot_D-dudresnayi_contig10140.183.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10140 4357..5274 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.5141144-UTR-D-dudresnayi_contig10140:4316..43561622927514.5141144-UTR-D-dudresnayi_contig10140:4316..4356Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10140 4317..4356 +
1690556787.4763074-UTR-D-dudresnayi_contig10140:4316..43561690556787.4763074-UTR-D-dudresnayi_contig10140:4316..4356Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10140 4317..4356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.5279515-CDS-D-dudresnayi_contig10140:4356..47661622927514.5279515-CDS-D-dudresnayi_contig10140:4356..4766Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10140 4357..4766 +
1690556787.487333-CDS-D-dudresnayi_contig10140:4356..47661690556787.487333-CDS-D-dudresnayi_contig10140:4356..4766Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10140 4357..4766 +
1622927514.538685-CDS-D-dudresnayi_contig10140:5165..52741622927514.538685-CDS-D-dudresnayi_contig10140:5165..5274Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10140 5166..5274 +
1690556787.4957266-CDS-D-dudresnayi_contig10140:5165..52741690556787.4957266-CDS-D-dudresnayi_contig10140:5165..5274Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10140 5166..5274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10140.183.1

>prot_D-dudresnayi_contig10140.183.1 ID=prot_D-dudresnayi_contig10140.183.1|Name=mRNA_D-dudresnayi_contig10140.183.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=173bp
MLSAHAGDGGVHQTHSYEANGGGDASRAVPKKASFRNGYSSVGDSEDEDE
EDQGGLIVGGTRGVSRKTKKNYVGVNASGEDQEEEEQDEVKEGDKTSGRL
AIFALLNLVYVVLQLAGSLAFDSLALMSDGFHNLSDVAAILMAMYIHKLQ
RRRCPENAAGGSDELPHGFKRAE
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mRNA from alignment at D-dudresnayi_contig10140:4317..5274+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10140.183.1 ID=mRNA_D-dudresnayi_contig10140.183.1|Name=mRNA_D-dudresnayi_contig10140.183.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=958bp|location=Sequence derived from alignment at D-dudresnayi_contig10140:4317..5274+ (Desmarestia dudresnayi DdudBR16 monoicous)
TTGACTTTTCACATAGCAGCACATCACGCTCGCAACATCTATGCTTAGTG
CGCACGCAGGCGATGGTGGTGTTCATCAAACCCACAGTTACGAAGCCAAT
GGCGGCGGCGACGCTTCACGAGCAGTGCCTAAGAAGGCCTCGTTTCGAAA
TGGTTACTCAAGCGTCGGCGATAGCGAGGATGAGGACGAGGAGGACCAAG
GAGGGCTGATTGTTGGGGGCACTAGGGGCGTCAGCCGAAAGACGAAGAAG
AACTATGTCGGCGTGAACGCTAGTGGCGAAGACCAGGAGGAAGAGGAGCA
GGACGAGGTTAAGGAAGGGGACAAAACTTCGGGACGCTTGGCGATTTTCG
CTTTGCTGAATCTTGTGTACGTTGTCCTGCAACTGGCTGGGTCGTTGGCG
TTTGACTCGCTGGCGCTGATGTCGGATGGCTTCCACAACCTCTCAGACGT
GTGAGTCCGTGTGGTTTGTGTTTTCCAATTCTGATGCTTGGTGTGACAGT
AGTAGCGTAACAGTGGTTTGCTGGGTGTTGTGTTAGAGGTTTTCGGACCA
AAATAAATATAACGCAGATTTTTGCTGGCCTCCGTCGATGCTCGTGTGCA
TCGTCCATCCAACACCAAAGACGCACGTATGCGATACATACGCGTACCTC
GTATACAGCAAGCACACACCAGAAACGTAAGAGTCCAGCAAAGTCAGAGT
CGAGAAGTTTACCAGGTTTCAGATATAGTAACTCCTCACGACTCGTACTC
GTGCTCTGTTGAATCGCTTGCCGCATCATCCCGAGCGCTACTAAAGCGGG
CGGTTCCCAACGCTCTGATTTTGTCTCTGCTTGCTATCATATGCACCAGC
GCCGCCATCCTGATGGCCATGTATATCCACAAGCTGCAACGGAGACGTTG
CCCGGAGAACGCTGCTGGTGGGAGCGACGAGCTACCGCACGGCTTCAAAC
GTGCTGAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10140:4317..5274+

>mRNA_D-dudresnayi_contig10140.183.1 ID=mRNA_D-dudresnayi_contig10140.183.1|Name=mRNA_D-dudresnayi_contig10140.183.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at D-dudresnayi_contig10140:4317..5274+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCTTAGTGCGCACGCAGGCGATGGTGGTGTTCATCAAACCCACAGTTA
CGAAGCCAATGGCGGCGGCGACGCTTCACGAGCAGTGCCTAAGAAGGCCT
CGTTTCGAAATGGTTACTCAAGCGTCGGCGATAGCGAGGATGAGGACGAG
GAGGACCAAGGAGGGCTGATTGTTGGGGGCACTAGGGGCGTCAGCCGAAA
GACGAAGAAGAACTATGTCGGCGTGAACGCTAGTGGCGAAGACCAGGAGG
AAGAGGAGCAGGACGAGGTTAAGGAAGGGGACAAAACTTCGGGACGCTTG
GCGATTTTCGCTTTGCTGAATCTTGTGTACGTTGTCCTGCAACTGGCTGG
GTCGTTGGCGTTTGACTCGCTGGCGCTGATGTCGGATGGCTTCCACAACC
TCTCAGACGTATGCTTAGTGCGCACGCAGGCGATGGTGGTGTTCATCAAA
CCCACAGTTACGAAGCCAATGGCGGCGGCGACGCTTCACGAGCAGTGCCT
AAGAAGGCCTCGTTTCGAAATGGTTACTCAAGCGTCGGCGATAGCGAGGA
TGAGGACGAGGAGGACCAAGGAGGGCTGATTGTTGGGGGCACTAGGGGCG
TCAGCCGAAAGACGAAGAAGAACTATGTCGGCGTGAACGCTAGTGGCGAA
GACCAGGAGGAAGAGGAGCAGGACGAGGTTAAGGAAGGGGACAAAACTTC
GGGACGCTTGGCGATTTTCGCTTTGCTGAATCTTGTGTACGTTGTCCTGC
AACTGGCTGGGTCGTTGGCGTTTGACTCGCTGGCGCTGATGTCGGATGGC
TTCCACAACCTCTCAGACGTCGCCGCCATCCTGATGGCCATGTATATCCA
CAAGCTGCAACGGAGACGTTGCCCGGAGAACGCTGCTGGTGGGAGCGACG
AGCTACCGCACGGCTTCAAACGTGCTGAGCGCCGCCATCCTGATGGCCAT
GTATATCCACAAGCTGCAACGGAGACGTTGCCCGGAGAACGCTGCTGGTG
GGAGCGACGAGCTACCGCACGGCTTCAAACGTGCTGAG
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