mRNA_D-dudresnayi_contig10137.175.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10137.175.1
Unique NamemRNA_D-dudresnayi_contig10137.175.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10137.175.1 vs. uniprot
Match: D8LEG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEG1_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.270e-23
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 QRDLGRKLVHQTWPSFEPLVRSYLALFVECALQLPEVEFDDVNGKEEVFDPEKHRELGRF 180
            ++++GR LVHQTWP+FEP+VRSYLALFVECALQ P++EFD+  GKEE FDPEKHR L  F
Sbjct:   45 KKEVGRMLVHQTWPTFEPVVRSYLALFVECALQEPQIEFDEAAGKEEPFDPEKHRPLASF 104
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BLAST of mRNA_D-dudresnayi_contig10137.175.1 vs. uniprot
Match: A0A6H5JCP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP3_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.500e-23
Identity = 45/71 (63.38%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    1 QRDLGRKLVHQTWPSFEPLVRSYLALFVECALQLPEVEFDDVNGKEEVFDPEKHRELGRFMEPDDVESNST 213
            ++++GR LVHQTWP+FEP+VRSYLALFVECALQ P++EFD+  GKEE FDPEKHR L  F  P    +++T
Sbjct:  426 KKEIGRMLVHQTWPTFEPVVRSYLALFVECALQEPQIEFDEAAGKEEPFDPEKHRPLASFSAPASPRTSTT 496
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BLAST of mRNA_D-dudresnayi_contig10137.175.1 vs. uniprot
Match: D7FSP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP1_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.380e-10
Identity = 35/86 (40.70%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:   34 TWPSFEPLVRSYLALFVECALQLPEVEFDDVNGKEEVFDPEKHRELGRFMEPDDVESNSTCCIVFPSTLTARARVPPSDVARSGVI 291
            TWPSFE L+++YL +FVE ALQ P ++F+D  G    FDP +H +L  +      +    C IVFPS     A   P   A+ GV+
Sbjct:  289 TWPSFEALMKNYLLVFVEMALQKPGIDFEDSLGDNVAFDPAEHCDLAPYSRAPTAQH---CSIVFPSIRPQEAH--PHSNAKIGVV 369
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BLAST of mRNA_D-dudresnayi_contig10137.175.1 vs. uniprot
Match: D7FSP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP0_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.680e-9
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:   34 TWPSFEPLVRSYLALFVECALQLPEVEFDDVNGKEEVFDPEKHRELGRFMEPDDVESNSTCCIVFPSTLTARARVPPSDVARSGVI 291
            TWPSFE L+++YL +FVE ALQ P VEF+D  G    FD   HR+   + +     +  +C IVFP+      R  P+  A+ GV+
Sbjct:  435 TWPSFEALMKNYLLVFVEMALQKPRVEFEDNLGDAMTFDSIIHRDWAPYSK---APAGQSCSIVFPAIRPQEGR--PTSNAKIGVV 515
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BLAST of mRNA_D-dudresnayi_contig10137.175.1 vs. uniprot
Match: A0A6H5KFA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA2_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 7.100e-9
Identity = 34/85 (40.00%), Postives = 47/85 (55.29%), Query Frame = 1 
Query:   37 WPSFEPLVRSYLALFVECALQLPEVEFDDVNGKEEVFDPEKHRELGRFMEPDDVESNSTCCIVFPSTLTARARVPPSDVARSGVI 291
            WPSFE L+++YL +FVE ALQ P VEF+D  G    FD   HR+   + +     +  +C IVFP+      R  P   A+ GV+
Sbjct:  266 WPSFEALMKNYLMVFVEMALQKPRVEFEDNLGDAVTFDSVVHRDWAPYSK---APAGQSCSIVFPALRPQEGR--PMSNAKIGVV 345
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10137.175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LEG1_ECTSI1.270e-2371.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCP3_9PHAE3.500e-2363.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSP1_ECTSI4.380e-1040.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSP0_ECTSI1.680e-940.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFA2_9PHAE7.100e-940.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10137contigD-dudresnayi_contig10137:3458..3962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_004840.1
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.0285177-CDS-D-dudresnayi_contig10137:3457..35441622927514.0285177-CDS-D-dudresnayi_contig10137:3457..3544Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10137 3458..3544 +
1690556787.2288854-CDS-D-dudresnayi_contig10137:3457..35441690556787.2288854-CDS-D-dudresnayi_contig10137:3457..3544Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10137 3458..3544 +
1622927514.0412877-CDS-D-dudresnayi_contig10137:3728..39621622927514.0412877-CDS-D-dudresnayi_contig10137:3728..3962Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10137 3729..3962 +
1690556787.2410562-CDS-D-dudresnayi_contig10137:3728..39621690556787.2410562-CDS-D-dudresnayi_contig10137:3728..3962Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10137 3729..3962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10137.175.1prot_D-dudresnayi_contig10137.175.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10137 3458..3962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10137.175.1

>prot_D-dudresnayi_contig10137.175.1 ID=prot_D-dudresnayi_contig10137.175.1|Name=mRNA_D-dudresnayi_contig10137.175.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=107bp
QRDLGRKLVHQTWPSFEPLVRSYLALFVECALQLPEVEFDDVNGKEEVFD
PEKHRELGRFMEPDDVESNSTCCIVFPSTLTARARVPPSDVARSGVIMWS
SKYFKL*
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mRNA from alignment at D-dudresnayi_contig10137:3458..3962+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10137.175.1 ID=mRNA_D-dudresnayi_contig10137.175.1|Name=mRNA_D-dudresnayi_contig10137.175.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=505bp|location=Sequence derived from alignment at D-dudresnayi_contig10137:3458..3962+ (Desmarestia dudresnayi DdudBR16 monoicous)
CAACGGGACCTCGGCAGGAAGCTGGTGCACCAGACGTGGCCGTCATTCGA
GCCCCTCGTTCGGTCCTACCTCGCGCTGTTCGTGGAGGTGAGTTTGACAT
ATATTTTTTAAATGAAATCGTTTTTATATTAATCTATTAACGTCCACAGT
ACAGTAGTTTTTTTTTGTTCTTTTGTTCCTTGTGTTGCTTGGAATACTAC
TACTGTCGCACGACGGTGTCGGCAGCACGCGGTGCTAACCCCCTTCTAAC
CCCGCCCCCTCCCCACAACAGTGTGCCCTGCAATTGCCGGAGGTCGAGTT
CGATGACGTCAACGGTAAGGAAGAGGTGTTCGACCCGGAGAAGCACCGGG
AGTTGGGAAGGTTCATGGAGCCGGACGACGTGGAGTCAAACAGCACCTGC
TGCATCGTGTTTCCCAGCACTTTGACCGCCAGGGCTAGGGTGCCCCCCTC
TGACGTCGCCAGGAGCGGCGTTATAATGTGGAGTAGCAAGTACTTCAAGC
TGTGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10137:3458..3962+

>mRNA_D-dudresnayi_contig10137.175.1 ID=mRNA_D-dudresnayi_contig10137.175.1|Name=mRNA_D-dudresnayi_contig10137.175.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at D-dudresnayi_contig10137:3458..3962+ (Desmarestia dudresnayi DdudBR16 monoicous)
CAACGGGACCTCGGCAGGAAGCTGGTGCACCAGACGTGGCCGTCATTCGA
GCCCCTCGTTCGGTCCTACCTCGCGCTGTTCGTGGAGCAACGGGACCTCG
GCAGGAAGCTGGTGCACCAGACGTGGCCGTCATTCGAGCCCCTCGTTCGG
TCCTACCTCGCGCTGTTCGTGGAGTGTGCCCTGCAATTGCCGGAGGTCGA
GTTCGATGACGTCAACGGTAAGGAAGAGGTGTTCGACCCGGAGAAGCACC
GGGAGTTGGGAAGGTTCATGGAGCCGGACGACGTGGAGTCAAACAGCACC
TGCTGCATCGTGTTTCCCAGCACTTTGACCGCCAGGGCTAGGGTGCCCCC
CTCTGACGTCGCCAGGAGCGGCGTTATAATGTGGAGTAGCAAGTACTTCA
AGCTGTGATGTGCCCTGCAATTGCCGGAGGTCGAGTTCGATGACGTCAAC
GGTAAGGAAGAGGTGTTCGACCCGGAGAAGCACCGGGAGTTGGGAAGGTT
CATGGAGCCGGACGACGTGGAGTCAAACAGCACCTGCTGCATCGTGTTTC
CCAGCACTTTGACCGCCAGGGCTAGGGTGCCCCCCTCTGACGTCGCCAGG
AGCGGCGTTATAATGTGGAGTAGCAAGTACTTCAAGCTGTGA
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