mRNA_D-dudresnayi_contig10133.170.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10133.170.1
Unique NamemRNA_D-dudresnayi_contig10133.170.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10133.170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10133contigD-dudresnayi_contig10133:1286..1700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927513.6618848-CDS-D-dudresnayi_contig10133:1285..15251622927513.6618848-CDS-D-dudresnayi_contig10133:1285..1525Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10133 1286..1525 +
1690556787.1066082-CDS-D-dudresnayi_contig10133:1285..15251690556787.1066082-CDS-D-dudresnayi_contig10133:1285..1525Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10133 1286..1525 +
1622927513.67953-CDS-D-dudresnayi_contig10133:1637..17001622927513.67953-CDS-D-dudresnayi_contig10133:1637..1700Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10133 1638..1700 +
1690556787.1158478-CDS-D-dudresnayi_contig10133:1637..17001690556787.1158478-CDS-D-dudresnayi_contig10133:1637..1700Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10133 1638..1700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10133.170.1prot_D-dudresnayi_contig10133.170.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10133 1286..1700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10133.170.1

>prot_D-dudresnayi_contig10133.170.1 ID=prot_D-dudresnayi_contig10133.170.1|Name=mRNA_D-dudresnayi_contig10133.170.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=101bp
PAPVSAPVPPPATVPAPIPPTVSAPAPVPPPVSAPAPPPPSSANPLSISS
ETDTSSSGALAHDETSFQSSSNPLSSNSPTRGMTSAPSFRTTADNDPHET
N
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mRNA from alignment at D-dudresnayi_contig10133:1286..1700+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10133.170.1 ID=mRNA_D-dudresnayi_contig10133.170.1|Name=mRNA_D-dudresnayi_contig10133.170.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=415bp|location=Sequence derived from alignment at D-dudresnayi_contig10133:1286..1700+ (Desmarestia dudresnayi DdudBR16 monoicous)
CCTGCACCGGTGTCTGCACCAGTCCCACCTCCAGCCACTGTCCCTGCTCC
TATCCCACCTACAGTTTCTGCGCCAGCACCGGTTCCACCGCCAGTGTCTG
CTCCTGCTCCACCACCCCCATCCTCTGCTAACCCTCTCTCGATCTCGAGT
GAAACTGACACTAGCAGCAGCGGCGCCCTTGCCCACGACGAGACGTCTTT
CCAGAGCTCCAGCAACCCCCTCTCCTCCAACTCACCCACGGTACGTACTA
TAACCTACATACTATAATATAGATACTATCTTTTCTTAGTATTAAATACA
CATTTACAATACTCGTAACATGTTTCTTACTATTGTCGTGTTTCTTATAC
AGCGTGGCATGACATCGGCGCCAAGTTTCCGCACAACTGCAGACAATGAC
CCGCATGAGACGAAC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10133:1286..1700+

>mRNA_D-dudresnayi_contig10133.170.1 ID=mRNA_D-dudresnayi_contig10133.170.1|Name=mRNA_D-dudresnayi_contig10133.170.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at D-dudresnayi_contig10133:1286..1700+ (Desmarestia dudresnayi DdudBR16 monoicous)
CCTGCACCGGTGTCTGCACCAGTCCCACCTCCAGCCACTGTCCCTGCTCC
TATCCCACCTACAGTTTCTGCGCCAGCACCGGTTCCACCGCCAGTGTCTG
CTCCTGCTCCACCACCCCCATCCTCTGCTAACCCTCTCTCGATCTCGAGT
GAAACTGACACTAGCAGCAGCGGCGCCCTTGCCCACGACGAGACGTCTTT
CCAGAGCTCCAGCAACCCCCTCTCCTCCAACTCACCCACGCCTGCACCGG
TGTCTGCACCAGTCCCACCTCCAGCCACTGTCCCTGCTCCTATCCCACCT
ACAGTTTCTGCGCCAGCACCGGTTCCACCGCCAGTGTCTGCTCCTGCTCC
ACCACCCCCATCCTCTGCTAACCCTCTCTCGATCTCGAGTGAAACTGACA
CTAGCAGCAGCGGCGCCCTTGCCCACGACGAGACGTCTTTCCAGAGCTCC
AGCAACCCCCTCTCCTCCAACTCACCCACGCGTGGCATGACATCGGCGCC
AAGTTTCCGCACAACTGCAGACAATGACCCGCATGAGACGAACCGTGGCA
TGACATCGGCGCCAAGTTTCCGCACAACTGCAGACAATGACCCGCATGAG
ACGAAC
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