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Homology
BLAST of mRNA_D-dudresnayi_contig10073.110.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE) HSP 1 Score: 191 bits (484), Expect = 4.180e-51 Identity = 92/212 (43.40%), Postives = 132/212 (62.26%), Query Frame = 2
Query: 740 YLSLTINYAEQELYEIFVRAQRSANIMSLSYPSETYNLTDAKRKALYFIAGWMLSRILTHVKRHKMRQVEWCDVVNTNVFRSKDQAIVEKPELHDLVGEVDARNDTENGRGVLFPRIRFFEFVLALELGYFHNLRNPVVLGAFLGDF*TEVLEVVRNSLPVKTAWEACCPTGKDG----LTPAVRDEVLSFLLGKWHNCRMGDYASRLSEVS 1363
YL IN ++ELY +FV+ + +N ++L+YP+E + ++ A+ K LY+IAGW+LS+ + +RH + EW +V N S AI P L D+VGEVDARND NG G+LFP + ++EFV +E G +H LR+P LG +LGD E+L VV S V+ AW CCP+ P + D++ F+L K+HN RMGD+A RLS+ S
Sbjct: 98 YLCCIINVVDEELYRVFVKEREKSNTVALTYPTEIHKISTARGKVLYYIAGWLLSKAWSRKRRHNIPDQEWDFIVQHNHSPSSAGAIERDPILQDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHVENGIYHFLRDPYFLGTYLGDLSAEILRVVTESSEVRRAWAKCCPSAVAPPPFEAQPEILDDIYKFVLQKFHNVRMGDFARRLSQNS 309
BLAST of mRNA_D-dudresnayi_contig10073.110.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI) HSP 1 Score: 186 bits (473), Expect = 1.670e-50 Identity = 90/193 (46.63%), Postives = 119/193 (61.66%), Query Frame = 2
Query: 770 QELYEIFVRAQRSANIMSLSYPSETYNLTDAKRKALYFIAGWMLSRILTHVKRHKMRQVEWCDVVNTNVFRSKDQAIVEKPELHDLVGEVDARNDTENGRGVLFPRIRFFEFVLALELGYFHNLRNPVVLGAFLGDF*TEVLEVVRNSLPVKTAWEACCPTGKDGLT----PAVRDEVLSFLLGKWHNCRMGD 1336
QELY +FVR ++ AN++ LSYP + +T + K LY+I+GW+LS++ THV+R K+ + EW V+ N S A+ + EL LVGEV R+D NG G+LF FFEF ALE+GYFH L P +LGA+LGD E L VVR + V+ AW CCP + V EV F++ KWHNCRMGD
Sbjct: 169 QELYGVFVRKKKEANLIKLSYPDKKTRVTKPRAKVLYYISGWLLSKVWTHVRRQKIEEREWVSFVDLNKSASAGAAVEKDKELEHLVGEVKRRHDEINGAGLLFATKVFFEFTYALEIGYFHILSKPFLLGAYLGDLPGETLRVVREATAVRDAWAECCPPSSGSVNFEWDSKVAHEVFLFIVQKWHNCRMGD 361
BLAST of mRNA_D-dudresnayi_contig10073.110.1 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI) HSP 1 Score: 150 bits (379), Expect = 8.310e-38 Identity = 71/160 (44.38%), Postives = 98/160 (61.25%), Query Frame = 2
Query: 770 QELYEIFVRAQRSANIMSLSYPSETYNLTDAKRKALYFIAGWMLSRILTHVKRHKMRQVEWCDVVNTNVFRSKDQAIVEKPELHDLVGEVDARNDTENGRGVLFPRIRFFEFVLALELGYFHNLRNPVVLGAFLGDF*TEVLEVVRNSLPVKTAWEACCP 1249
QELY +FVR ++ AN++ LSYP +T + K LY+I+GW+LS+ HV+R K+ + EW V+ N S+ A+ + EL LVGEV RND NG G+LF FFEF A E+GYFH L P +LGA+L ++L VV + ++ AW CCP
Sbjct: 111 QELYGVFVRKKKEANLIKLSYPDNKTRVTKPRAKVLYYISGWLLSKDWAHVRRQKIEEREWVSFVDLNKSASEGAAVEKDKELEHLVGEVKRRNDEINGAGLLFATKAFFEFTYASEIGYFHILSKPFLLGAYLVGLPGDMLRVVSEATEIRDAWAECCP 270
BLAST of mRNA_D-dudresnayi_contig10073.110.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE) HSP 1 Score: 134 bits (338), Expect = 1.830e-31 Identity = 88/292 (30.14%), Postives = 131/292 (44.86%), Query Frame = 2
Query: 560 WDFYVEALKMAQIEKSYNKKAWAFTSKRFSTWPGRQRGWVSNESIMSEARKLFGHERSVRYLSLTINYAEQ----ELYEIFVRAQRSANIMSLSYPSETYNLTDAKRKALYFIAGWMLSRILTHVKRHKMRQVEWCDVVNTNVFRSKDQA----------------------------------------IVEKP-------------ELHDLVGEVDARNDTENGRGVLFPRIRFFEFVLALELGYFHNLRNPVVLGAFLGDF*TEVLEVVRNSLPVKTAWEACCPTGKDG 1264
W V+ L K K+A FT RF W G RGW+S++ I L ER L IN ++ L + R AN+++ +YP L+ +R+ LY+IAGW+LS+I+THV+RH ++++EW +V+ + + SK A IV++ EL + EV RND RG++F F + +L LE GYFH L P LG++LG+ E+L +V S V+ AW+ACC + G
Sbjct: 51 WKALVDLLASTCKGKRSTKEATKFTVARFQRWEGTLRGWMSDDVIQRVMFGLQSVERGKHELCGVINQVDEVNLRRLGGLAENKLRDANVITPTYPRTQVALSIPRRRLLYYIAGWVLSKIVTHVRRHNIQEIEWMWIVDRHKYPSKRAAEENEMELRGVTEEVQRRNDPTRPRGLVFVTSLLQEIEWMWIVDRHKYPSKRAAEGNEMELRGVTEEVQRRNDPTRPRGLVFVTSLFLKLLLTLESGYFHVLSQPAFLGSYLGNLPEEILRLVSESPTVQRAWDACCQAREGG 342
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 5 |
Model size | 1601 |
Cds size | 663 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622927507.94559-CDS-D-dudresnayi_contig10073:5376..5787 | 1622927507.94559-CDS-D-dudresnayi_contig10073:5376..5787 | Desmarestia dudresnayi DdudBR16 monoicous | CDS | D-dudresnayi_contig10073 5377..5787 - |
1690556783.7478764-CDS-D-dudresnayi_contig10073:5376..5787 | 1690556783.7478764-CDS-D-dudresnayi_contig10073:5376..5787 | Desmarestia dudresnayi DdudBR16 monoicous | CDS | D-dudresnayi_contig10073 5377..5787 - |
1622927507.9654245-CDS-D-dudresnayi_contig10073:6124..6376 | 1622927507.9654245-CDS-D-dudresnayi_contig10073:6124..6376 | Desmarestia dudresnayi DdudBR16 monoicous | CDS | D-dudresnayi_contig10073 6125..6376 - |
1690556783.757684-CDS-D-dudresnayi_contig10073:6124..6376 | 1690556783.757684-CDS-D-dudresnayi_contig10073:6124..6376 | Desmarestia dudresnayi DdudBR16 monoicous | CDS | D-dudresnayi_contig10073 6125..6376 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig10073.110.1 >prot_D-dudresnayi_contig10073.110.1 ID=prot_D-dudresnayi_contig10073.110.1|Name=mRNA_D-dudresnayi_contig10073.110.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=221bp
MPMAETRAFVDQLWDFYVEALKMAQIEKSYNKKAWAFTSKRFSTWPGRQR GWVSNESIMSEARKLFGHERSVRYLSLTINYAEQELYEIFVRAQRSANIM SLSYPSETYNLTDAKRKALYFIAGWMLSRILTHVKRHKMRQVEWCDVVNT NVFRSKDQAIVEKPELHDLVGEVDARNDTENGRGVLFPRIRFFEFVLALE LGYFHNLRNPVVLGAFLGDF* back to topmRNA from alignment at D-dudresnayi_contig10073:4959..9394- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig10073.110.1 ID=mRNA_D-dudresnayi_contig10073.110.1|Name=mRNA_D-dudresnayi_contig10073.110.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4436bp|location=Sequence derived from alignment at D-dudresnayi_contig10073:4959..9394- (Desmarestia dudresnayi DdudBR16 monoicous) GCACATGGAGGGGGTCGATTCGCCAATCTGTGCGGCGCCTATCCGAGATG
TGCTAGAGGATGGAGCAACTCCTTCGCATTACTCGTACAGCGAAGACACC
GCTCAAGTTTCACGTATGAGGCCTCTAACGGAGGTGGTGAGTTAAACATA
AGAAATTCCGTTTTTTCGGGTGAGACTCTTTTAGTATTATAGTACTTGAG
GTACTCACCGATAGTTACAAGTACTACTGTCTGTACAATAGCAGGAGACA
AGCAAGACGGACGTGTCGTACGGGTTCGTAGTAGACATTCCCCAAAGACT
TTTGTGTGTACCGCCAGCCTTCGGGCACACGCATGAAGGATCGAGGCCAC
AGACTATTGTGTGCAAGAAACCAGGCTGCTTGCACGGATGAGTTGAGCCT
TGTCTCCTGTTATTACGGATGGTGGGCTGTTGAGGGAACCCGTCGTGCAC
TACTACTTGCTATCAACAAAAGGAGTCGACGCTGCTAGAATACTACCATT
ACTGTTGTACTGGTATGATACGCTGTTGTTAATGTGGTGCATTTGAAGTA
TGGCACGGATATACACCTATATACGATTGTCCCAAATCGCTCACAGGGCA
CCAAATCCTGATTCTATACTAATAGCGAGTGTTGCGATATCGCGTATGGA
CACAGGCGGCATCGTGGTGGCATCGCGATGCCCGCCGAGAAGAGCCGCGG
AGATTCGGGTCCTTTCTCTTCTTTCTCTCCCAAGATACGCAAAATAATAC
GAAGGGTCCACCACAAGAGCCAGAGTTCGTGTGTTTATTTTGCAGGCTGT
ACAACAATAAACAGTAGTAGTATCATGAGCTCGTTCCTAGGAGGGGTGGA
TGCATAAGAAGGGAGCCCTGGCTGGTGTGCCCGGCAGAGTCCCTGCTAGT
TGCATAGCTATGCACCTGTGTGATGTGATGATTGGACGGTTGCAGCGGTC
CTTTGTGTTCGTACACGATCGGTAACTCGCTGTGGTTCATGAGCTACAGT
CAGCGGAAACAATGTGAGCGTTGCGGCTGGACCAACTCGCACAGCTTTAG
CAACAGATAAACGACGATGAAGACAATATGTTATACAATAAAGGAGGGGC
GGATGCATAATAATAAGAAGGGAGGGCTGGCTAGTGTGACCAGCAGAGTG
CCTGCTGGCAATAAAGTGAGGGCTCAAGGAGTGCTAGCTATCGTAGAGGA
GGGACGGTGTGAGATAGATGCAGTGTGAGGTATGATACAAAACAAAGTGA
CGGATAAACCTCCTCATATGACTGCTGTACCACTACTATACCATCACCAT
ACCGGGAAAAAAAAACAAAAAGCGAATATTAACAGCAATCGTTCAATAAG
CTGCGCACTGATAATTTTGCTCTGTATTCTCTGTAGCCTGAGTTCGAATC
CGCATGGTGTCGTCTTTTTTTCTGAAGCCACAAGCACTTCTACTACACCA
GGTCCTACTACTATTATACTACTACTTCGTATTACTACTCCTGTACTGCT
CTACAGGTATCATTTATAGCGTATCATTCTACTGTGTGATGTGTGCCGTA
CTGTACTCCTGTACTGTAGTCCTGCGGCGGTACTACCATCGGAGACCACC
GCGGAATATTGGCAAACTGCGCTTAGATAGAAGAAACGCCTACCATTTGG
GGATGATATAATATTATCAGTGTTATGTCTCCTGCTTGGGTTTCGTCTCG
CCCCTAATGTTGAAAGCACGTGTAACTCTTTAGGCACGATGTTTACCCCA
CCGACACGTTGCCTACGGATTTCCTTTCACACCCTTGGCATGCGCCCTAA
AATTTGGCGAGCCTGCCGGGCAGTTCACTGCCCGGCAGGCGCCCTTGTAT
TTTTTATTTACAAATACATCAGCCGTGAAGTTCCAAACTGGTTCGGGGTC
CAGGGGATAATCGTCAATCTCAGTGTGTGATACTTCGGTCACGCGGATTC
TATCGGTCCTTAGATAAAACAGAATTTTTACAACACATCACCCATGCAAG
CGCGAAAGTTGACAGTAGGAACACGACATACAGTATAATAGTCAACAAGG
CGAAGGGTAGCCGCGGTTTTTATGGCGGGTTTAGTTTCAACAACACTTCA
TATACATGTAGAGATTCTGCCAGGAAACTGATAATCATTGTCGCGTTCAT
GTAGTAATTGTAATGTCACCGCGCGTTTCCTTAACCATACAGGTCGAGGG
CGGGTTGGCTGAAGTTCAAGTTCAATCCGCAAATGGCGCACGGGGGATCA
GAGCACCGCAAGTGACTGGATTTCCTGGCACTCCTGACGACGATGATGTT
CCGCAAGGTATCGACATGTAGCATTCATAGTTAGGCTACTCGCATAGTTT
CAGATGACGACGTAATGTTGCGATGCCACGGGTGCAAGAAAGAAGCCCTT
TTCTTCATGCTGTAGTCGCCAGACCGTCTGATTTACTGTGGGACGAATTA
CAACTACTATCCCGTGTAACACAACACCCGCACCGGCGATCATGTGCAGG
GTTTGAAATGCATGGCGAGGAAGTCGAACTTGACGACGACGCCCTCTTGC
TCCAGTGGACCCATCGCGAGCTACATGAGAACCCTACCGCTAAAGATCGG
GAGGTAAGGAACAGAGGAAAGTCGCCCCTATATGCTACAGGCGGTGCGAG
CGGCACTCGTTCATAGTTTAGAGTCAAGACGACAAGCCTTTTTGCCTACG
GCTCCAGACGATTTGCCCAGATCCCTGTTAATATGGGGCATGCCCATTCG
TTGTCCGTTAGGACGGCGATCTAACGAAGCTAGTGCGTTAGTACCTGCAA
CGCAAAATCACCTAAACCTTTTCCCACCCGATGCAACACCACACATGCTG
CAGGCGTCTGCAGCGGTGGCGTCTGCAGCGGTGGCGTCTGCAGCGGTGGC
TAGTTTGGCTGTGGGAAACTTGCCTGACCATGACGAAGTCTTCCGATGAC
TCGAAGCCGCCCTCGCAGAACGCTTCGTTTCCGGCGAAATCTACCTCAAG
GTCCTCTTAGATAAAGTCATGCCCATGGCAGAGACCCGTGCTTTCGTGGA
CCAGCTGTGGGATTTCTACGTGGAGGCACTGAAGATGGCTCAGATAGAAA
AGTCGTATAATAAGAAAGCGTGGGCATTCACGAGCAAGCGCTTTTCGACG
TGGCCGGGGAGACAGCGTGGGTGGGTTTCAAATGAGTCAATAATGAGTGA
AGCGCGCAAACTATTTGGTCATGAGAGGTCGGTTCGCTACCTGTCTCTCA
CCATCAACTACGCCGAACAGGTGGGTGTCTATATCGTTCGCGACGAAGCA
AACCGTACTCTCTTCAGACATAGCCGGAAACGACAGCCCCGTTTCCATGT
CTGGGCTCAGTATCTGCCGTATTTGACGTTTCATTGTGTTCTCCTCGCAG
AGGGCCTACAGTGATAGTGTGTGTGTTTTTTTCCTGTATACTAGTACATA
TGGCCTCAAAACTTGCGAAAATGTAGTCGATGCTGGGTTCAACGCTTCTC
GGGTTCGCCCAAAATAACCCGAACATCGTTCGGCGCCAACGTAAGTAACT
CCCGGCGTTTCCGTTGCATCCACGCGTCATGTCGTGCCTTTACTCGGTGT
GAATCAGGAGCTGTACGAAATCTTCGTTCGTGCGCAGAGGTCTGCCAACA
TAATGTCGCTATCCTATCCGAGCGAGACGTACAACCTCACGGACGCTAAA
AGGAAAGCTTTGTACTTCATCGCGGGTTGGATGCTGAGCAGAATTTTGAC
GCATGTCAAGCGCCACAAGATGAGGCAGGTGGAATGGTGCGACGTCGTCA
ATACGAATGTCTTCCGGTCGAAGGACCAAGCCATCGTGGAAAAGCCTGAG
CTGCATGACCTCGTGGGCGAAGTCGACGCGAGGAACGACACCGAAAATGG
GAGGGGCGTGTTGTTCCCACGGATAAGATTCTTTGAATTCGTCTTGGCGC
TCGAGTTGGGGTACTTCCATAACCTCAGAAATCCAGTTGTCCTCGGCGCA
TTCCTCGGCGACTTCTAGACAGAGGTGCTCGAGGTCGTCCGCAACTCCTT
GCCGGTCAAAACAGCGTGGGAGGCTTGCTGTCCCACCGGTAAAGACGGTC
TTACGCCCGCAGTCAGAGACGAAGTGTTGTCCTTTCTTCTTGGTAAATGG
CACAACTGCCGAATGGGCGACTACGCTAGTCGACTAAGCGAGGTGTCGGC
GACGTTTTGGGTGCGGCGAAAGCAGACAACCTAGCTCTCCGCACCACCCT
AAAAGCCGTGAGTAAAGACGGGCGGGGGAGGGAAGCGAGTGCAGCTCGTC
GTGGGAGTCTCATCACTGACGCCCATCGCCGGTACCGCCAGTCTCTCAGC
GGCATGTCTGACGGCCAGTTGCATGCCCTCCAGAAACCTGCCCTCGTCAG
CCACATCCGAGCCGCTGGCGGAAAATTCAGGCAGAG back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig10073:4959..9394- >mRNA_D-dudresnayi_contig10073.110.1 ID=mRNA_D-dudresnayi_contig10073.110.1|Name=mRNA_D-dudresnayi_contig10073.110.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1326bp|location=Sequence derived from alignment at D-dudresnayi_contig10073:4959..9394- (Desmarestia dudresnayi DdudBR16 monoicous) ATGCCCATGGCAGAGACCCGTGCTTTCGTGGACCAGCTGTGGGATTTCTA CGTGGAGGCACTGAAGATGGCTCAGATAGAAAAGTCGTATAATAAGAAAG CGTGGGCATTCACGAGCAAGCGCTTTTCGACGTGGCCGGGGAGACAGCGT GGGTGGGTTTCAAATGAGTCAATAATGAGTGAAGCGCGCAAACTATTTGG TCATGAGAGGTCGGTTCGCTACCTGTCTCTCACCATCAACTACGCCGAAC AGATGCCCATGGCAGAGACCCGTGCTTTCGTGGACCAGCTGTGGGATTTC TACGTGGAGGCACTGAAGATGGCTCAGATAGAAAAGTCGTATAATAAGAA AGCGTGGGCATTCACGAGCAAGCGCTTTTCGACGTGGCCGGGGAGACAGC GTGGGTGGGTTTCAAATGAGTCAATAATGAGTGAAGCGCGCAAACTATTT GGTCATGAGAGGTCGGTTCGCTACCTGTCTCTCACCATCAACTACGCCGA ACAGGAGCTGTACGAAATCTTCGTTCGTGCGCAGAGGTCTGCCAACATAA TGTCGCTATCCTATCCGAGCGAGACGTACAACCTCACGGACGCTAAAAGG AAAGCTTTGTACTTCATCGCGGGTTGGATGCTGAGCAGAATTTTGACGCA TGTCAAGCGCCACAAGATGAGGCAGGTGGAATGGTGCGACGTCGTCAATA CGAATGTCTTCCGGTCGAAGGACCAAGCCATCGTGGAAAAGCCTGAGCTG CATGACCTCGTGGGCGAAGTCGACGCGAGGAACGACACCGAAAATGGGAG GGGCGTGTTGTTCCCACGGATAAGATTCTTTGAATTCGTCTTGGCGCTCG AGTTGGGGTACTTCCATAACCTCAGAAATCCAGTTGTCCTCGGCGCATTC CTCGGCGACTTCTAGGAGCTGTACGAAATCTTCGTTCGTGCGCAGAGGTC TGCCAACATAATGTCGCTATCCTATCCGAGCGAGACGTACAACCTCACGG ACGCTAAAAGGAAAGCTTTGTACTTCATCGCGGGTTGGATGCTGAGCAGA ATTTTGACGCATGTCAAGCGCCACAAGATGAGGCAGGTGGAATGGTGCGA CGTCGTCAATACGAATGTCTTCCGGTCGAAGGACCAAGCCATCGTGGAAA AGCCTGAGCTGCATGACCTCGTGGGCGAAGTCGACGCGAGGAACGACACC GAAAATGGGAGGGGCGTGTTGTTCCCACGGATAAGATTCTTTGAATTCGT CTTGGCGCTCGAGTTGGGGTACTTCCATAACCTCAGAAATCCAGTTGTCC TCGGCGCATTCCTCGGCGACTTCTAG back to top
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