mRNA_D-dudresnayi_contig1058.659.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1058.659.1
Unique NamemRNA_D-dudresnayi_contig1058.659.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig1058.659.1 vs. uniprot
Match: A0A7S3H4P0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4P0_9STRA)

HSP 1 Score: 352 bits (904), Expect = 8.600e-117
Identity = 174/281 (61.92%), Postives = 225/281 (80.07%), Query Frame = 1 
Query:    1 PATYRLSVLSTRTALLLPLCTFLMFISLVAPSSYVMMMFFITTIEGYCLYAFLALITTNLGGPQATVELMEKSQRPMLCSVCLPKEPVCFFRMTVWVLFHVLAMRSICSLISAICFYSGTQSGKSAYAFFNALSALILVCGFVCLVNLYENVYEYLINLFGVLKLALLKVSIGAIVIQGLIENILYGTGSLSYD-DDAHSAQEKSMRVYCGLVMVELALLSLLYYYAFGDHKITPSSAPAAVRAFLHDQRSPHKVSTSGVRAVETLVYSLRSFVADILAIQ 840
            PATYRL VLS RTAL LPLC+F +FI+L+AP SY+MM+F +T IEGY   +F AL T NLGGP ATV+LM+ S R +LCS CLP + V F+R T W +FHV   RS+  L++AICFY+ T +GKSAY FFNALS  +L  G +CLVN+YE V+E+ INL+GVLKL LLK ++G IV+QGLIE+ILY  GS++Y+ DD +S ++K++R YCGLV++ELAL+S++Y+YA+GDHKITP SAPAAVRAFL D+RSP+KVS SGVR+VETLVYS   F+ D+L ++
Sbjct:   34 PATYRLIVLSARTALFLPLCSFFIFIALIAPGSYLMMIFLVTIIEGYAFNSFFALTTENLGGPSATVQLMKSSDRQLLCSFCLPSDVVVFYRRTTWAMFHVFVTRSVLGLLAAICFYANTDAGKSAYVFFNALSTAVLFYGVICLVNVYEKVHEHCINLYGVLKLVLLKATVGLIVVQGLIESILYRNGSVTYESDDTYSGEQKALRAYCGLVLMELALISVIYFYAYGDHKITPPSAPAAVRAFLSDRRSPYKVSVSGVRSVETLVYSFPLFLYDVLNVR 314
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1058.659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3H4P0_9STRA8.600e-11761.92Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1058contigD-dudresnayi_contig1058:25852..26837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size842
Cds size840
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1058.659.1prot_D-dudresnayi_contig1058.659.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1058 25854..26837 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927562.4393463-CDS-D-dudresnayi_contig1058:25853..260681622927562.4393463-CDS-D-dudresnayi_contig1058:25853..26068Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1058 25854..26068 -
1690556808.4097087-CDS-D-dudresnayi_contig1058:25853..260681690556808.4097087-CDS-D-dudresnayi_contig1058:25853..26068Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1058 25854..26068 -
1622927562.4567919-CDS-D-dudresnayi_contig1058:26144..263241622927562.4567919-CDS-D-dudresnayi_contig1058:26144..26324Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1058 26145..26324 -
1690556808.418593-CDS-D-dudresnayi_contig1058:26144..263241690556808.418593-CDS-D-dudresnayi_contig1058:26144..26324Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1058 26145..26324 -
1622927562.4679127-CDS-D-dudresnayi_contig1058:26392..268371622927562.4679127-CDS-D-dudresnayi_contig1058:26392..26837Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1058 26393..26837 -
1690556808.4338002-CDS-D-dudresnayi_contig1058:26392..268371690556808.4338002-CDS-D-dudresnayi_contig1058:26392..26837Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1058 26393..26837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1058.659.1

>prot_D-dudresnayi_contig1058.659.1 ID=prot_D-dudresnayi_contig1058.659.1|Name=mRNA_D-dudresnayi_contig1058.659.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=280bp
PATYRLSVLSTRTALLLPLCTFLMFISLVAPSSYVMMMFFITTIEGYCLY
AFLALITTNLGGPQATVELMEKSQRPMLCSVCLPKEPVCFFRMTVWVLFH
VLAMRSICSLISAICFYSGTQSGKSAYAFFNALSALILVCGFVCLVNLYE
NVYEYLINLFGVLKLALLKVSIGAIVIQGLIENILYGTGSLSYDDDAHSA
QEKSMRVYCGLVMVELALLSLLYYYAFGDHKITPSSAPAAVRAFLHDQRS
PHKVSTSGVRAVETLVYSLRSFVADILAIQ
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mRNA from alignment at D-dudresnayi_contig1058:25852..26837-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1058.659.1 ID=mRNA_D-dudresnayi_contig1058.659.1|Name=mRNA_D-dudresnayi_contig1058.659.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=986bp|location=Sequence derived from alignment at D-dudresnayi_contig1058:25852..26837- (Desmarestia dudresnayi DdudBR16 monoicous)
CCAGCGACATATCGCCTGTCGGTGCTCAGCACTCGCACAGCATTGCTTCT
ACCATTATGTACATTCTTGATGTTTATATCCCTAGTTGCACCCAGCTCAT
ATGTCATGATGATGTTTTTCATAACCACGATAGAAGGATACTGTTTGTAT
GCTTTTCTTGCACTTATAACAACTAATCTAGGAGGACCTCAGGCAACAGT
TGAACTTATGGAAAAGTCTCAGAGGCCTATGTTGTGTAGTGTCTGCTTGC
CCAAAGAACCCGTGTGTTTTTTTCGTATGACAGTATGGGTGTTATTTCAC
GTCCTTGCCATGCGCTCCATATGTAGCTTGATATCGGCCATATGTTTTTA
CTCTGGTACGCAATCTGGCAAGAGCGCCTACGCCTTCTTCAACGCCCTGT
CCGCCCTGATCCTGGTGTGCGGCTTCGTCTGCTTGGTTAACTTATGTGAG
TTAATCATAATGCCTAACTGCTACTTTTCTATTGTTTATCTTACTCCGCT
GCCTGCTTGTCAGATGAGAATGTTTACGAGTACCTTATCAACCTCTTCGG
AGTGCTCAAGCTGGCTCTGCTGAAAGTAAGCATAGGCGCTATAGTCATAC
AGGGGCTTATCGAGAACATTCTGTACGGCACTGGATCCCTGAGCTATGAC
GACGACGCCCATTCTGCGCAGGAGAAGTCCATGCGCGTATATTGTGCGTA
CACCTGCTGTCTGTATATCTGTTCTGACCCAGTAGTTTCTCATTTATTCC
CCGCAATTGCATATTATAGGTGGTTTGGTTATGGTGGAGCTCGCGCTTTT
GTCGTTGTTGTATTATTATGCGTTCGGGGACCACAAGATCACCCCGTCCA
GCGCCCCGGCCGCAGTGCGCGCCTTCTTGCACGACCAGCGCTCCCCACAC
AAGGTCAGCACCAGCGGCGTGCGCGCGGTGGAGACGCTGGTGTACAGTCT
GCGCAGCTTTGTTGCGGACATCTTGGCGATCCAGGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1058:25852..26837-

>mRNA_D-dudresnayi_contig1058.659.1 ID=mRNA_D-dudresnayi_contig1058.659.1|Name=mRNA_D-dudresnayi_contig1058.659.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1680bp|location=Sequence derived from alignment at D-dudresnayi_contig1058:25852..26837- (Desmarestia dudresnayi DdudBR16 monoicous)
CCAGCGACATATCGCCTGTCGGTGCTCAGCACTCGCACAGCATTGCTTCT
ACCATTATGTACATTCTTGATGTTTATATCCCTAGTTGCACCCAGCTCAT
ATGTCATGATGATGTTTTTCATAACCACGATAGAAGGATACTGTTTGTAT
GCTTTTCTTGCACTTATAACAACTAATCTAGGAGGACCTCAGGCAACAGT
TGAACTTATGGAAAAGTCTCAGAGGCCTATGTTGTGTAGTGTCTGCTTGC
CCAAAGAACCCGTGTGTTTTTTTCGTATGACAGTATGGGTGTTATTTCAC
GTCCTTGCCATGCGCTCCATATGTAGCTTGATATCGGCCATATGTTTTTA
CTCTGGTACGCAATCTGGCAAGAGCGCCTACGCCTTCTTCAACGCCCTGT
CCGCCCTGATCCTGGTGTGCGGCTTCGTCTGCTTGGTTAACTTATCCAGC
GACATATCGCCTGTCGGTGCTCAGCACTCGCACAGCATTGCTTCTACCAT
TATGTACATTCTTGATGTTTATATCCCTAGTTGCACCCAGCTCATATGTC
ATGATGATGTTTTTCATAACCACGATAGAAGGATACTGTTTGTATGCTTT
TCTTGCACTTATAACAACTAATCTAGGAGGACCTCAGGCAACAGTTGAAC
TTATGGAAAAGTCTCAGAGGCCTATGTTGTGTAGTGTCTGCTTGCCCAAA
GAACCCGTGTGTTTTTTTCGTATGACAGTATGGGTGTTATTTCACGTCCT
TGCCATGCGCTCCATATGTAGCTTGATATCGGCCATATGTTTTTACTCTG
GTACGCAATCTGGCAAGAGCGCCTACGCCTTCTTCAACGCCCTGTCCGCC
CTGATCCTGGTGTGCGGCTTCGTCTGCTTGGTTAACTTATATGAGAATGT
TTACGAGTACCTTATCAACCTCTTCGGAGTGCTCAAGCTGGCTCTGCTGA
AAGTAAGCATAGGCGCTATAGTCATACAGGGGCTTATCGAGAACATTCTG
TACGGCACTGGATCCCTGAGCTATGACGACGACGCCCATTCTGCGCAGGA
GAAGTCCATGCGCGTATATTATGAGAATGTTTACGAGTACCTTATCAACC
TCTTCGGAGTGCTCAAGCTGGCTCTGCTGAAAGTAAGCATAGGCGCTATA
GTCATACAGGGGCTTATCGAGAACATTCTGTACGGCACTGGATCCCTGAG
CTATGACGACGACGCCCATTCTGCGCAGGAGAAGTCCATGCGCGTATATT
GTGGTTTGGTTATGGTGGAGCTCGCGCTTTTGTCGTTGTTGTATTATTAT
GCGTTCGGGGACCACAAGATCACCCCGTCCAGCGCCCCGGCCGCAGTGCG
CGCCTTCTTGCACGACCAGCGCTCCCCACACAAGGTCAGCACCAGCGGCG
TGCGCGCGGTGGAGACGCTGGTGTACAGTCTGCGCAGCTTTGTTGCGGAC
ATCTTGGCGATCCAGGTGGTTTGGTTATGGTGGAGCTCGCGCTTTTGTCG
TTGTTGTATTATTATGCGTTCGGGGACCACAAGATCACCCCGTCCAGCGC
CCCGGCCGCAGTGCGCGCCTTCTTGCACGACCAGCGCTCCCCACACAAGG
TCAGCACCAGCGGCGTGCGCGCGGTGGAGACGCTGGTGTACAGTCTGCGC
AGCTTTGTTGCGGACATCTTGGCGATCCAG
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