prot_D-dudresnayi_contig9774.28574.1 (polypeptide) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_D-dudresnayi_contig9774.28574.1
Unique Name	prot_D-dudresnayi_contig9774.28574.1
Type	polypeptide
Organism	Desmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Sequence length	342

Homology

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BLAST of mRNA_D-dudresnayi_contig9774.28574.1 vs. uniprot
Match: A0A6H5L8S9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8S9_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 6.670e-34
Identity = 82/143 (57.34%), Postives = 112/143 (78.32%), Query Frame = 0

Query:  147 VETAPPE-VRQLLESSQNTIALLLLLLSHYVFTHIVGISAFVLGTVVLVGLDRRLQSHADALVLKSRFVLIGVAVTAVVTVAASAFAFNKFPEGEALFRGLILATPKPD-VSSVAAVIRTTVVVDLWARLLSITIKALLALLA 287
            VE  PPE + + L  ++ TIALL+LL+ HY+ TH+VGI+AF +GT ++V LD+RL SHA A  L++RFVL+GVAVTAVV VA SA   + FP+GE L R L+L  PKP  + +V+AVIRTT+VVD+WARLLS+T+KA+LA+++
Sbjct:  282 VEGNPPEELLRALVGARITIALLVLLMCHYIVTHLVGIAAFSMGTAIVVVLDQRLWSHAGAQTLRNRFVLLGVAVTAVVVVALSAMVLSNFPQGEGLLRRLLLVAPKPPALGTVSAVIRTTIVVDIWARLLSVTVKAVLAVVS 424

[Close]

BLAST of mRNA_D-dudresnayi_contig9774.28574.1 vs. uniprot
Match: D7FJ26_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ26_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.910e-6
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 0

Query:  147 VETAPPE-VRQLLESSQNTIALLLLLLSHYVFTHIVGISAFVLGTVVLVGLDRRLQSHADA 206
            VET PPE + + L  ++ TIALLLLL+ HY+ TH++GI+AF +GT ++V LD+RL SH+ A
Sbjct:  303 VETNPPEELLRALVGARITIALLLLLMCHYIVTHLLGIAAFSMGTAIVVVLDQRLWSHSGA 363

The following BLAST results are available for this feature:

BLAST of mRNA_D-dudresnayi_contig9774.28574.1 vs. uniprot

BLAST of mRNA_D-dudresnayi_contig9774.28574.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L8S9_9PHAE	6.670e-34	57.34	RING-type domain-containing protein n=1 Tax=Ectoca...	[more]
D7FJ26_ECTSI	1.910e-6	54.10	RING-type domain-containing protein n=1 Tax=Ectoca...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 165..193
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 194..212
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..164
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 270..288
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 289..342
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 234..269
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 213..233
None	No IPR available	TMHMM	TMhelix		coord: 213..232
None	No IPR available	TMHMM	TMhelix		coord: 174..196

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-dudresnayi_contig9774	contig	D-dudresnayi_contig9774:2023..6139 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_D-dudresnayi_contig9774.28574.1	mRNA_D-dudresnayi_contig9774.28574.1	Desmarestia dudresnayi DdudBR16 monoicous	mRNA	D-dudresnayi_contig9774 2023..6139 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_D-dudresnayi_contig9774.28574.1 ID=prot_D-dudresnayi_contig9774.28574.1|Name=mRNA_D-dudresnayi_contig9774.28574.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=342bp
ASGAARWRQAAVAAFSRNRTSIIPGLGRGASFGRRNGRAGVGTGGGAGGG
AGIGGRTATVNPTTGSQGRRAGVRNRGTSRRDEARQRGETQGLPSRGSRG
RREEGSGEGRERGGEDVGVAQESSSPSTSETEADADANANAPGPAVVETA
PPEVRQLLESSQNTIALLLLLLSHYVFTHIVGISAFVLGTVVLVGLDRRL
QSHADALVLKSRFVLIGVAVTAVVTVAASAFAFNKFPEGEALFRGLILAT
PKPDVSSVAAVIRTTVVVDLWARLLSITIKALLALLAGRGSNNDNSNNNN
NPCLSGCLTSCSRFHRCRGRFVEVLRRSGSADGRPRLRESPR