prot_D-dudresnayi_contig9761.28557.1 (polypeptide) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-dudresnayi_contig9761.28557.1
Unique Nameprot_D-dudresnayi_contig9761.28557.1
Typepolypeptide
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Sequence length245
Homology
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BLAST of mRNA_D-dudresnayi_contig9761.28557.1 vs. uniprot
Match: D8LL59_ECTSI (Bromo domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL59_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 4.680e-83
Identity = 133/251 (52.99%), Postives = 173/251 (68.92%), Query Frame = 0 
Query:    1 PLLRRAGVEGKDVEGRYTHITLCAYCCNPAVDDAAIGLCERCPRRFCIPCLRKDMERK----EPVTPDIH-ILDENVGDVFVKLCEWCVRGNDIDFPPPPADSAPMEHLLEQLLAHDLSRQFRAPVDIDEHPDYLESIGRESMMDLGRMLKKLRGRKYPRRRGPGQFVEDLARIWRNCRKFAGCDELGQPHYGTAVPGIVRCALILEAMATKYCTTHISEH-EGIDWPETAWDFYRKKTQRANEEARLRQL 245
            P+LR+     +  E R +H+  CA C +   +   IG CERCPR FC  CL + +  +    E +  D   +L+   GD+ +  C  C RG D +F PPP   APM+HLL +LL HDLS  FR PVDI +HPDY+ESIGR +MMDLG ML KL+G++YPRRRGPGQF EDL RIWRNCR+FAGCDELG+PHYG  VPGIVRCAL LEAM+ K+ ++++S++ E   W E+ WDF+R++ +R N EAR +QL
Sbjct:  318 PVLRQITEGREGAEDRSSHLMDCASCQHSLPEGDPIGRCERCPRSFCSQCLERGLVEQGVELEALGQDCRSLLNGKQGDISIARCPECFRGKDNEFAPPPPGGAPMDHLLSELLRHDLSLCFREPVDIVKHPDYVESIGRNAMMDLGTMLSKLQGKRYPRRRGPGQFQEDLNRIWRNCRRFAGCDELGRPHYGNTVPGIVRCALTLEAMSDKFISSYMSDNQETAAWQESTWDFHRQRQERENAEARRKQL 568
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BLAST of mRNA_D-dudresnayi_contig9761.28557.1 vs. uniprot
Match: A0A1E7EUT7_9STRA (Bromodomain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUT7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.640e-6
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 0 
Query:  104 LLEQLLAHDLSRQFRAPVDIDEHPDYLESIGRESMMDLGRMLKKLRGRKYPRRRGPGQFVEDLARIWRNCRKF 176
            ++++L     +  F  PV++D+ PDY ESI  +  MDLG +  KL  +KY     P QF  D+ +IW NC+ +
Sbjct:    2 IVDRLAQDGFANIFLEPVNLDDFPDYEESI--DIPMDLGTVRTKLLSKKYQM---PEQFARDMRKIWNNCKIY 69
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9761.28557.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL59_ECTSI4.680e-8352.99Bromo domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A1E7EUT7_9STRA7.640e-636.99Bromodomain-containing protein (Fragment) n=1 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001487BromodomainSMARTSM00297bromo_6coord: 90..214
e-value: 6.3E-7
score: 39.0
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 101..178
e-value: 2.9E-12
score: 46.5
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 109..184
score: 9.297
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 97..219
e-value: 6.1E-18
score: 66.7
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 99..215
IPR037800Histone acetyltransferase GCN5PANTHERPTHR45750FAMILY NOT NAMEDcoord: 100..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9761contigD-dudresnayi_contig9761:671..1405 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9761.28557.1mRNA_D-dudresnayi_contig9761.28557.1Desmarestia dudresnayi DdudBR16 monoicousmRNAD-dudresnayi_contig9761 671..1405 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-dudresnayi_contig9761.28557.1 ID=prot_D-dudresnayi_contig9761.28557.1|Name=mRNA_D-dudresnayi_contig9761.28557.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=245bp
PLLRRAGVEGKDVEGRYTHITLCAYCCNPAVDDAAIGLCERCPRRFCIPC
LRKDMERKEPVTPDIHILDENVGDVFVKLCEWCVRGNDIDFPPPPADSAP
MEHLLEQLLAHDLSRQFRAPVDIDEHPDYLESIGRESMMDLGRMLKKLRG
RKYPRRRGPGQFVEDLARIWRNCRKFAGCDELGQPHYGTAVPGIVRCALI
LEAMATKYCTTHISEHEGIDWPETAWDFYRKKTQRANEEARLRQL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf
IPR037800GCN5