prot_D-dudresnayi_contig9575.28363.1 (polypeptide) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-dudresnayi_contig9575.28363.1
Unique Nameprot_D-dudresnayi_contig9575.28363.1
Typepolypeptide
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Sequence length117
Homology
BLAST of mRNA_D-dudresnayi_contig9575.28363.1 vs. uniprot
Match: A0A7S3HNH2_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNH2_9STRA)

HSP 1 Score: 226 bits (576), Expect = 7.230e-75
Identity = 101/116 (87.07%), Postives = 106/116 (91.38%), Query Frame = 0
Query:    1 MSWPFCSVCGTILDPPDGEIVKCTHCPFTCKFTDIMAPEVQTKSAPTTKPAWVADESSDSASGGKELVKHATIEEPCPKCNHHEMYFYTMQLRSVDEGSTVFYECPSCAYKFSVNN 116
            MSWPFCSVCGTILDPPDGE+VKCTHCPF+CKFTDIMAPEV TKSAPTTKPAWVADE  D  S GKE+VKHATIEE CP+CNH E+YFYTMQLRSVDEGSTVFYECP CAYKFS NN
Sbjct:    3 MSWPFCSVCGTILDPPDGEMVKCTHCPFSCKFTDIMAPEVITKSAPTTKPAWVADEGKDEGSAGKEMVKHATIEENCPRCNHPELYFYTMQLRSVDEGSTVFYECPECAYKFSQNN 118          
BLAST of mRNA_D-dudresnayi_contig9575.28363.1 vs. uniprot
Match: A0A482UUV5_9ARCH (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UUV5_9ARCH)

HSP 1 Score: 150 bits (378), Expect = 1.100e-44
Identity = 72/119 (60.50%), Postives = 85/119 (71.43%), Query Frame = 0
Query:    1 MSWPFCSVCGTILDPPDGEIVKCTHCPFTCKFTDIMAPEVQTKSAPTTKPAWVADE---SSDSASGGKELVKHATIEEPCPKCNHHEMYFYTMQLRSVDEGSTVFYECPSCAYKFSVNN 116
            ++WPFC  CG IL+ P  + V C  C F+C F D+   EV TKSAP  KP ++AD+   + DS++G K    HA IEEPCPKC H EMYFYTMQLRSVDEGSTVFYECP C +KFSVNN
Sbjct:    4 LNWPFCPQCGCILEYPVADKVTCDLCKFSCNFVDMQLNEVITKSAPLPKPTYLADDEDGNKDSSAGNK----HAIIEEPCPKCAHPEMYFYTMQLRSVDEGSTVFYECPKCTHKFSVNN 118          
BLAST of mRNA_D-dudresnayi_contig9575.28363.1 vs. uniprot
Match: D8LL81_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL81_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 8.560e-32
Identity = 55/118 (46.61%), Postives = 71/118 (60.17%), Query Frame = 0
Query:    1 MSWPFCSVCGTILDPPDGEIVKCTHCPFTCKFTDIMAPEVQTKSAPTTKPAWVADESSDSASGGKELVKHATIEEPCPKCNHHEMYFYTMQLRSVDEGSTVFYECPS--CAYKFSVNN 116
            M WPFC  CG++LDPP+   + C HC     +      EV T+S    +P W+         G K+ ++ AT+EE CPKC H +M FYTMQLRS DEG TVFYEC S  C +K++VNN
Sbjct:    1 MPWPFCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEPEWLVQ---IQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115          
BLAST of mRNA_D-dudresnayi_contig9575.28363.1 vs. uniprot
Match: A0A836CG05_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG05_9STRA)

HSP 1 Score: 115 bits (287), Expect = 6.980e-31
Identity = 58/118 (49.15%), Postives = 72/118 (61.02%), Query Frame = 0
Query:    1 MSWPFCSVCGTILDPPDGEIVKCTHCPFTCKFTDIMAPEVQTKSAPTTKPAWVADESSDSASGGKELVKHATIEEPCPKCNHHEMYFYTMQLRSVDEGSTVFYEC--PSCAYKFSVNN 116
            M+WPFC  CG +L  P+   V+C +C     F      E+ T+SAP   P WV +  +    G +E  K AT++E CPKC H EM FYTMQLRS DEG TVFYEC   +C +KFSVNN
Sbjct:    1 MTWPFCPTCGAVLALPEYGDVECGNCKAEMTFESFGKVELITQSAPRPLPRWVEELENK---GIREKQKRATVDEQCPKCGHPEMEFYTMQLRSADEGQTVFYECLNKNCQHKFSVNN 115          
BLAST of mRNA_D-dudresnayi_contig9575.28363.1 vs. uniprot
Match: A0A7S2HHJ5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHJ5_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.270e-30
Identity = 51/113 (45.13%), Postives = 71/113 (62.83%), Query Frame = 0
Query:    4 PFCSVCGTILDPPDGEIVKCTHCPFTCKFTDIMAPEVQTKSAPTTKPAWVADESSDSASGGKELVKHATIEEPCPKCNHHEMYFYTMQLRSVDEGSTVFYECPSCAYKFSVNN 116
            PFC  CG+I   P+ + + C++C F   + ++  P V T SAP   P+W A++ ++ A  G   +     EE CP+C+H E+ +YTMQLRS DEG TVFYEC  C +KFSVNN
Sbjct:   11 PFCPECGSIFKLPNVDPISCSYCSFETTYRELQLPTVITVSAPRPLPSWAAEKKNEDAGTG---MARMVSEERCPECDHPELMYYTMQLRSADEGQTVFYECSECNHKFSVNN 120          
BLAST of mRNA_D-dudresnayi_contig9575.28363.1 vs. uniprot
Match: A0A024TQD9_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TQD9_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.050e-29
Identity = 52/111 (46.85%), Postives = 67/111 (60.36%), Query Frame = 0
Query:    5 FCSVCGTILDPPDGEIVKCTHCPFTCKFTDIMAPEVQTKSAPTTKPAWVADESSDSASGGKELVKHATIEEPCPKCNHHEMYFYTMQLRSVDEGSTVFYECPSCAYKFSVN 115
            FC  CG+ILD P+   + C+ C FTC++TD+ +    T S    +P WV +        G      AT+EE CPKC H EM FYT+QLRS DEG TVFYEC  C +++SVN
Sbjct:   16 FCKHCGSILDLPETNSIVCSSCGFTCRYTDLPSLTTITYSQDRPEPKWVKENVQSQEVTGP---SRATVEETCPKCGHPEMEFYTLQLRSADEGQTVFYECKKCGHRYSVN 123          
BLAST of mRNA_D-dudresnayi_contig9575.28363.1 vs. uniprot
Match: A0A0N7L402_PLAHL (DNA-directed RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L402_PLAHL)

HSP 1 Score: 111 bits (278), Expect = 2.170e-29
Identity = 54/114 (47.37%), Postives = 70/114 (61.40%), Query Frame = 0
Query:    5 FCSVCGTILDPPDGEIVKCTHCPFTCKFTDIMAPEVQTKSAPTTKPAWVADESSDSASGGKELV--KHATIEEPCPKCNHHEMYFYTMQLRSVDEGSTVFYECPSCAYKFSVNN 116
            FC  CGTILD PD   + C+ C + C++ D+ +  V T+S     P W+     D+  G  E+     AT+EE CPKC + EM +YT+QLRS DEG TVFYEC  C +KFSVNN
Sbjct:   17 FCPHCGTILDHPDTNNIVCSACEYRCRYQDLPSLSVVTQSEDRPLPKWL-----DAKVGMSEVTGPARATVEETCPKCENPEMDYYTLQLRSADEGQTVFYECKKCGHKFSVNN 125          
BLAST of mRNA_D-dudresnayi_contig9575.28363.1 vs. uniprot
Match: M4BZT8_HYAAE (DNA-directed RNA polymerase subunit n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4BZT8_HYAAE)

HSP 1 Score: 111 bits (277), Expect = 3.080e-29
Identity = 54/112 (48.21%), Postives = 68/112 (60.71%), Query Frame = 0
Query:    5 FCSVCGTILDPPDGEIVKCTHCPFTCKFTDIMAPEVQTKSAPTTKPAWVADESSDSASGGKELVKHATIEEPCPKCNHHEMYFYTMQLRSVDEGSTVFYECPSCAYKFSVNN 116
            FC  CGTILD PD   + C+ C + C++ D+ +  V T+S     P W+  E   S   G      AT+EE CPKC + EM +YT+QLRS DEG TVFYEC  C +KFSVNN
Sbjct:   17 FCPHCGTILDHPDTNSIVCSACEYRCRYQDLPSLTVITRSEDKPTPKWLDAEKVMSEVTGP---ARATVEETCPKCGNPEMDYYTLQLRSADEGQTVFYECKKCGHKFSVNN 125          
BLAST of mRNA_D-dudresnayi_contig9575.28363.1 vs. uniprot
Match: A0A5A8DHV6_CAFRO (DNA-directed RNA polymerase subunit n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DHV6_CAFRO)

HSP 1 Score: 110 bits (275), Expect = 4.920e-29
Identity = 51/116 (43.97%), Postives = 70/116 (60.34%), Query Frame = 0
Query:    2 SWPFCSVCGTILDPPDGEIVKCTHCPFTCKFTDIMAPEV--QTKSAPTTKPAWVADESSDSASGGKELVKHATIEEPCPKCNHHEMYFYTMQLRSVDEGSTVFYECPSCAYKFSVN 115
            S PFC  CGT+LD  D +   C+ C F+C++ D+    +  +T S     P W    S  + +GG      A ++EPCPKC H +M+FYTMQ+RS DEG TVF+ECP C + +SVN
Sbjct:    3 SVPFCPRCGTLLDLMDSDSATCSGCKFSCRYEDLSTAVLACETHSKQRELPLW--QRSLLAPAGGDGKAARALVDEPCPKCAHSQMFFYTMQMRSADEGQTVFFECPKCGHNYSVN 116          
BLAST of mRNA_D-dudresnayi_contig9575.28363.1 vs. uniprot
Match: A0A485LF44_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF44_9STRA)

HSP 1 Score: 110 bits (275), Expect = 6.020e-29
Identity = 52/111 (46.85%), Postives = 68/111 (61.26%), Query Frame = 0
Query:    5 FCSVCGTILDPPDGEIVKCTHCPFTCKFTDIMAPEVQTKSAPTTKPAWVADESSDSASGGKELVKHATIEEPCPKCNHHEMYFYTMQLRSVDEGSTVFYECPSCAYKFSVN 115
            FC  CGTILD P+   + C+ C +TC++TD+ +    T S    +P WV +E       G      AT+EE CPKC + +M FYTMQLRS DEG TVFYEC  C +++SVN
Sbjct:   16 FCPHCGTILDLPETNAIVCSSCGYTCRYTDLPSLCTVTFSEDRPEPKWVKEEIQSQEVTGP---ARATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYECKKCGHRYSVN 123          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9575.28363.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3HNH2_9STRA7.230e-7587.07DNA-directed RNA polymerase subunit n=1 Tax=Spumel... [more]
A0A482UUV5_9ARCH1.100e-4460.50DNA-directed RNA polymerase I subunit RPA12 n=1 Ta... [more]
D8LL81_ECTSI8.560e-3246.61DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CG05_9STRA6.980e-3149.15DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A7S2HHJ5_9STRA3.270e-3045.13DNA-directed RNA polymerase subunit n=1 Tax=Dictyo... [more]
A0A024TQD9_9STRA1.050e-2946.85DNA-directed RNA polymerase subunit n=2 Tax=Aphano... [more]
A0A0N7L402_PLAHL2.170e-2947.37DNA-directed RNA polymerase subunit n=1 Tax=Plasmo... [more]
M4BZT8_HYAAE3.080e-2948.21DNA-directed RNA polymerase subunit n=22 Tax=Peron... [more]
A0A5A8DHV6_CAFRO4.920e-2943.97DNA-directed RNA polymerase subunit n=2 Tax=Cafete... [more]
A0A485LF44_9STRA6.020e-2946.85DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 75..114
e-value: 1.1E-14
score: 64.8
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 76..112
e-value: 7.9E-17
score: 60.8
IPR001222Zinc finger, TFIIS-typePROSITEPS00466ZF_TFIIS_1coord: 77..112
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 73..113
score: 13.261
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 3..116
e-value: 1.6E-24
score: 84.6
NoneNo IPR availableGENE3D2.20.25.10coord: 63..114
e-value: 2.3E-19
score: 70.4
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 4..116
NoneNo IPR availablePANTHERPTHR11239:SF14DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12coord: 4..116
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 67..113

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9575contigD-dudresnayi_contig9575:5871..6221 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9575.28363.1mRNA_D-dudresnayi_contig9575.28363.1Desmarestia dudresnayi DdudBR16 monoicousmRNAD-dudresnayi_contig9575 5871..6221 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-dudresnayi_contig9575.28363.1 ID=prot_D-dudresnayi_contig9575.28363.1|Name=mRNA_D-dudresnayi_contig9575.28363.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=117bp
MSWPFCSVCGTILDPPDGEIVKCTHCPFTCKFTDIMAPEVQTKSAPTTKP
AWVADESSDSASGGKELVKHATIEEPCPKCNHHEMYFYTMQLRSVDEGST
VFYECPSCAYKFSVNN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR012164Rpa12/Rpb9/Rpc10/TFS