prot_D-dudresnayi_contig10150.203.1 (polypeptide) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_D-dudresnayi_contig10150.203.1
Unique Name	prot_D-dudresnayi_contig10150.203.1
Type	polypeptide
Organism	Desmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Sequence length	254

Homology

[Close]

BLAST of mRNA_D-dudresnayi_contig10150.203.1 vs. uniprot
Match: A0A6H5KRS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS0_9PHAE)

HSP 1 Score: 340 bits (873), Expect = 6.660e-106
Identity = 176/198 (88.89%), Postives = 190/198 (95.96%), Query Frame = 0

Query:   48 TPPPVPVENLHGQELLEALKKQVEFYFSRQNLQTDGFLVSQMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCAVTPDGIKPSIKQERNTIILREIPSETPQDKIREIFTGEGVAPIKSIRSDVGDTWFITMDSEDDALSTILALRGKSFEGKAIKARLKSENILRSFFPVPTAAEVQPTAAAAAAGPYGMG 245
            TPP VP   L G+ELL ALKKQVEFYFS+QNLQ+DGFLVS+MNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVC VTPDGIKPSIKQERNTIILREIPS+TPQ+KIR+IFTG+GVAPIKSIRSDVGDTWF+TM+SEDDAL+TILALRGK+FEGKAIKARLKSEN+LRSFFPVPTAAEVQPTAAAAAA PYG+G
Sbjct:   60 TPPVVPEVKLDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSDTPQEKIRKIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAAAAAAPYGLG 257

[Close]

BLAST of mRNA_D-dudresnayi_contig10150.203.1 vs. uniprot
Match: D8LL21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL21_ECTSI)

HSP 1 Score: 325 bits (832), Expect = 4.610e-102
Identity = 168/188 (89.36%), Postives = 180/188 (95.74%), Query Frame = 0

Query:   48 TPPPVPVENLHGQELLEALKKQVEFYFSRQNLQTDGFLVSQMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCAVTPDGIKPSIKQERNTIILREIPSETPQDKIREIFTGEGVAPIKSIRSDVGDTWFITMDSEDDALSTILALRGKSFEGKAIKARLKSENILRSFFPVPTAAEVQPTAA 235
            +PP VP   L G+ELL ALKKQVEFYFS+QNLQ+DGFLVS+MNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVC VT DGIKPSIKQERNTIILREIPSETPQ+KIREIFTG+GVAPIKSIRSDVGDTWF+TM+SEDDAL+TILALRGK+FEGKAIKARLKSEN+LRSFFPVPTAAEVQPTAA
Sbjct:   55 SPPLVPEVKLDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTSDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALNTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAA 242

[Close]

BLAST of mRNA_D-dudresnayi_contig10150.203.1 vs. uniprot
Match: A0A7S4DKN7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKN7_HETAK)

HSP 1 Score: 226 bits (576), Expect = 7.720e-71
Identity = 114/176 (64.77%), Postives = 143/176 (81.25%), Query Frame = 0

Query:   57 LHGQELLEALKKQVEFYFSRQNLQTDGFLVSQMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCAVTPDGIKPSIKQERNTIILREIPSETPQDKIREIFTGEGVAPIKSIRSDVGDTWFITMDSEDDALSTILALRGKSFEGKAIKARLKSENILRSFFPVPTAAEVQP 232
            L G+ L EA+KKQ+EFYFSRQNLQTDGFLVS+MNA M VP+ VIA+F KI+ LT +  +I  +++ S VC VT D IKP+ K ERNTIILREIPS TP++K+REIFTGEG+API +IRSDVGDTWF+T+ SE  A++  LALR ++FEG+ +KARLKSEN+LR+F+PVP AA   P
Sbjct:   31 LEGEALREAVKKQIEFYFSRQNLQTDGFLVSKMNANMEVPITVIAEFAKIRALTREPDVIRAALEGSKVCIVTEDAIKPNFKTERNTIILREIPSNTPEEKVREIFTGEGMAPITNIRSDVGDTWFVTLGSEAAAVAACLALRERAFEGRPVKARLKSENLLRAFYPVPQAAADAP 206

[Close]

BLAST of mRNA_D-dudresnayi_contig10150.203.1 vs. uniprot
Match: A0A836CHL1_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL1_9STRA)

HSP 1 Score: 220 bits (561), Expect = 1.440e-68
Identity = 114/197 (57.87%), Postives = 149/197 (75.63%), Query Frame = 0

Query:   35 KGGGSSDGANSVATPPPVPVENLHGQELLEALKKQVEFYFSRQNLQTDGFLVSQMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCAVTPDGIKPSIKQERNTIILREIPSETPQDK-------IREIFTGEGVAPIKSIRSDVGDTWFITMDSEDDALSTILALRGKSFEGKAIKARLKSENILRSFFPV 224
            +GG S DG    A         L G+EL++AL++QVEFYFS+ NLQ+DGFLVS+M+A  CVP++VIAQF K++ LT+D   I  +V +S+VC VTP GI+P++K ER+TIILREIPS+TP  K       +RE+F GEG+API+ +RSDVG TWF+T  SE DA++TILALR ++FEGK +KARLK EN+LRSFFPV
Sbjct:   34 EGGSSGDGGVRGA--------RLEGKELVDALRQQVEFYFSKANLQSDGFLVSRMDASGCVPISVIAQFAKVRALTTDEGAIAAAVANSSVCTVTPQGIRPNLKAERHTIILREIPSDTPPAKASCCCTCVRELFAGEGMAPIRGVRSDVGATWFVTCASEADAMATILALRSRTFEGKPVKARLKGENLLRSFFPV 222

[Close]

BLAST of mRNA_D-dudresnayi_contig10150.203.1 vs. uniprot
Match: A0A2P4XI52_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XI52_9STRA)

HSP 1 Score: 209 bits (531), Expect = 7.340e-61
Identity = 113/189 (59.79%), Postives = 143/189 (75.66%), Query Frame = 0

Query:   57 LHGQELLEALKKQVEFYFSRQNLQTDGFLVSQMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCAV--TPDGIKPSIKQERNTIILREIPSETPQDKIREIFTGEGVAPIKSIRSDVGDTWFITMDSEDDALSTILALRGKSFEGKAIKARLKSENILRSFFPVPTAAEVQPTAAAAAAGPYG 243
            L G EL +A+K+QVEFYFSR NL  D +LVSQMN+QM VPV VI  F KI+QLT +TAL+VE+V+DST+C++  + D IKP+IK ER TIILREIPS T  +++  IF  EG   + S+RSDVGDTWF+TM+SE +A+ST+LALR K+F G AIKARLKSEN+L+SF+P   A  V   +A A   PYG
Sbjct:    9 LEGAELKQAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDNTALLVEAVQDSTICSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVEAIF--EGCGKVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAAIKARLKSENVLKSFYPTQPAENVIAPSAGA---PYG 192

[Close]

BLAST of mRNA_D-dudresnayi_contig10150.203.1 vs. uniprot
Match: A0A0W8DNS3_PHYNI (Ammonium Transporter (Amt) Family n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DNS3_PHYNI)

HSP 1 Score: 203 bits (516), Expect = 2.750e-60
Identity = 107/174 (61.49%), Postives = 134/174 (77.01%), Query Frame = 0

Query:   59 GQELLEALKKQVEFYFSRQNLQTDGFLVSQMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCAV--TPDGIKPSIKQERNTIILREIPSETPQDKIREIFTGEGVAPIKSIRSDVGDTWFITMDSEDDALSTILALRGKSFEGKAIKARLKSENILRSFFPVPTAAEV 230
            G EL EA+K+QVEFYFSR NL  D +LVSQMN+QM VPV VI  F KI+QLT D AL+V++V+DSTVC++  + D IKP+IK ER TIILREIPS T  +++  IF  EG   + S+RSDVGDTWF+TM+SE +A+ST+LALR K+F G  IKARLKSEN+L+SF+P   A  V
Sbjct:   11 GAELKEAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDDKALLVDAVQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVGAIF--EGCGKVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAPIKARLKSENVLKSFYPTQPAENV 182

[Close]

BLAST of mRNA_D-dudresnayi_contig10150.203.1 vs. uniprot
Match: A0A0P1AUF3_PLAHL (La-related protein 4 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUF3_PLAHL)

HSP 1 Score: 201 bits (510), Expect = 1.010e-59
Identity = 109/180 (60.56%), Postives = 134/180 (74.44%), Query Frame = 0

Query:   53 PVENLHGQELLEALKKQVEFYFSRQNLQTDGFLVSQMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCAVTP--DGIKPSIKQERNTIILREIPSETPQDKIREIFTGEGVAPIKSIRSDVGDTWFITMDSEDDALSTILALRGKSFEGKAIKARLKSENILRSFFPVPTAAEV 230
            PV+ L G EL EA+K+QVEFYFSR NL  D +LVSQMN+QM VPV VI  F KI+QLT +T L+VE+V+DSTVC+++   D IKP+IK ER TIILREIPS T  +++  IF   G   +  +RSDVGDTWFITM SE +A+ T+LALR K+  G AIKARLKSENIL+SF+P   A  V
Sbjct:    5 PVKALEGAELKEAIKRQVEFYFSRSNLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDNTMLLVEAVQDSTVCSLSSSKDAIKPNIKSERTTIILREIPSSTKPEEVEAIFKDCG--KVIGVRSDVGDTWFITMSSEAEAVDTLLALRSKTLNGAAIKARLKSENILKSFYPTQPAENV 182

[Close]

BLAST of mRNA_D-dudresnayi_contig10150.203.1 vs. uniprot
Match: H3GMU1_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GMU1_PHYRM)

HSP 1 Score: 204 bits (520), Expect = 1.160e-58
Identity = 111/187 (59.36%), Postives = 140/187 (74.87%), Query Frame = 0

Query:   59 GQELLEALKKQVEFYFSRQNLQTDGFLVSQMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCAV--TPDGIKPSIKQERNTIILREIPSETPQDKIREIFTGEGVAPIKSIRSDVGDTWFITMDSEDDALSTILALRGKSFEGKAIKARLKSENILRSFFPVPTAAEVQPTAAAAAAGPYG 243
            G EL EA+K QVEFYFSR NL  D +LVSQMN+QM VPV +I  F KI+QLT +TAL+VE+++DSTVC++  + D IKP+IK ER TIILREIPS T  +++  IF  EG   + S+RSDVGDTWF+TM++E +A+ST+LALR K+F G AIKARLKSEN+L+SF+P   A  V     AA   PYG
Sbjct:   11 GAELKEAIKSQVEFYFSRANLANDAYLVSQMNSQMYVPVEIIINFSKIKQLTDNTALLVEAMQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTQPEEVEAIF--EGCGKVASVRSDVGDTWFVTMNTESEAVSTLLALRSKTFNGAAIKARLKSENVLKSFYPTQPAENVIAPGVAA---PYG 192

[Close]

BLAST of mRNA_D-dudresnayi_contig10150.203.1 vs. uniprot
Match: D0NY71_PHYIT (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=D0NY71_PHYIT)

HSP 1 Score: 204 bits (518), Expect = 1.820e-58
Identity = 108/176 (61.36%), Postives = 135/176 (76.70%), Query Frame = 0

Query:   57 LHGQELLEALKKQVEFYFSRQNLQTDGFLVSQMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCAV--TPDGIKPSIKQERNTIILREIPSETPQDKIREIFTGEGVAPIKSIRSDVGDTWFITMDSEDDALSTILALRGKSFEGKAIKARLKSENILRSFFPVPTAAEV 230
            L G EL EA+K+QVEFYFSR NL  D +LVSQMN+QM VPV VI  F KI QLT +TAL+VE+V++STVC++  + D IKP+IK ER TIILREI S T  +++  IF  EG   + S+RSDVGDTWF+TM+SE +A+ST+LALR K+F G AIKARLKSEN+L+SF+P   A  V
Sbjct:    9 LEGAELKEAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKITQLTDNTALLVEAVQESTVCSLNSSKDAIKPNIKSERTTIILREISSSTKPEEVEAIF--EGCGKVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAAIKARLKSENVLKSFYPTQPAENV 182

[Close]

BLAST of mRNA_D-dudresnayi_contig10150.203.1 vs. uniprot
Match: A0A024TXK9_9STRA (HTH La-type RNA-binding domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXK9_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.920e-58
Identity = 108/172 (62.79%), Postives = 131/172 (76.16%), Query Frame = 0

Query:   57 LHGQELLEALKKQVEFYFSRQNLQTDGFLVSQMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCAVTPDG--IKPSIKQERNTIILREIPSETPQDKIREIFTGEGVAPIKSIRSDVGDTWFITMDSEDDALSTILALRGKSFEGKAIKARLKSENILRSFFPVPT 226
            L G  L EALK QVEFYFS+ NL  D FLVSQMN+QM VPV VI  F KI+ LT+D AL+V+S+KDSTVC+++P+G  IKP+IK ERNTIILREIPS T    +  IF  EG   + S+RSDVGDTWF+TM +E+DA++T+LALR K+F    IKARLKSEN+LRSF P  T
Sbjct:    7 LSGDALKEALKSQVEFYFSKANLVNDTFLVSQMNSQMYVPVDVIVGFSKIKALTTDVALVVDSIKDSTVCSLSPEGDAIKPNIKSERNTIILREIPSATDPKDVEAIF--EGCGTVASVRSDVGDTWFVTMATEEDAVNTLLALRSKTFHDAPIKARLKSENVLRSFLPEST 176

The following BLAST results are available for this feature:

BLAST of mRNA_D-dudresnayi_contig10150.203.1 vs. uniprot

BLAST of mRNA_D-dudresnayi_contig10150.203.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KRS0_9PHAE	6.660e-106	88.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LL21_ECTSI	4.610e-102	89.36	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S4DKN7_HETAK	7.720e-71	64.77	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A836CHL1_9STRA	1.440e-68	57.87	HTH La-type RNA-binding domain-containing protein ...	[more]
A0A2P4XI52_9STRA	7.340e-61	59.79	Uncharacterized protein n=1 Tax=Phytophthora palmi...	[more]
A0A0W8DNS3_PHYNI	2.750e-60	61.49	Ammonium Transporter (Amt) Family n=1 Tax=Phytopht...	[more]
A0A0P1AUF3_PLAHL	1.010e-59	60.56	La-related protein 4 n=1 Tax=Plasmopara halstedii ...	[more]
H3GMU1_PHYRM	1.160e-58	59.36	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]
D0NY71_PHYIT	1.820e-58	61.36	Uncharacterized protein n=9 Tax=Phytophthora TaxID...	[more]
A0A024TXK9_9STRA	1.920e-58	62.79	HTH La-type RNA-binding domain-containing protein ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 60..140 e-value: 2.2E-20 score: 83.7
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 66..121 e-value: 6.0E-19 score: 67.8
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 56..145 score: 19.913
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 53..143 e-value: 1.3E-25 score: 90.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 144..217 e-value: 5.4E-5 score: 25.3
None	No IPR available	PANTHER	PTHR22792:SF76	LARP (RNA BINDING LA RELATED PROTEIN) HOMOLOG	coord: 28..209
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 28..209
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 142..215 score: 9.78
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 56..146
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 134..220

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-dudresnayi_contig10150	contig	D-dudresnayi_contig10150:1394..4738 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_D-dudresnayi_contig10150.203.1	mRNA_D-dudresnayi_contig10150.203.1	Desmarestia dudresnayi DdudBR16 monoicous	mRNA	D-dudresnayi_contig10150 456..4738 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_D-dudresnayi_contig10150.203.1 ID=prot_D-dudresnayi_contig10150.203.1|Name=mRNA_D-dudresnayi_contig10150.203.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=254bp
MRMSAEESPVSVEALPVEMVVGGGVAAPAPVVLVKGGGSSDGANSVATPP
PVPVENLHGQELLEALKKQVEFYFSRQNLQTDGFLVSQMNAQMCVPVAVI
AQFHKIQQLTSDTALIVESVKDSTVCAVTPDGIKPSIKQERNTIILREIP
SETPQDKIREIFTGEGVAPIKSIRSDVGDTWFITMDSEDDALSTILALRG
KSFEGKAIKARLKSENILRSFFPVPTAAEVQPTAAAAAAGPYGMGGVASG
GAAG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006630	La_HTH
IPR036388	WH-like_DNA-bd_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR036390	WH_DNA-bd_sf
IPR035979	RBD_domain_sf