mRNA_D-dudresnayi_contig9993.28803.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9993.28803.1
Unique NamemRNA_D-dudresnayi_contig9993.28803.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9993.28803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9993contigD-dudresnayi_contig9993:5199..5557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size282
Cds size282
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930963.6990116-CDS-D-dudresnayi_contig9993:5198..52661622930963.6990116-CDS-D-dudresnayi_contig9993:5198..5266Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9993 5199..5266 -
1690557981.8405323-CDS-D-dudresnayi_contig9993:5198..52661690557981.8405323-CDS-D-dudresnayi_contig9993:5198..5266Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9993 5199..5266 -
1622930963.7237334-CDS-D-dudresnayi_contig9993:5343..55571622930963.7237334-CDS-D-dudresnayi_contig9993:5343..5557Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9993 5344..5557 -
1690557981.8515775-CDS-D-dudresnayi_contig9993:5343..55571690557981.8515775-CDS-D-dudresnayi_contig9993:5343..5557Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9993 5344..5557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9993.28803.1prot_D-dudresnayi_contig9993.28803.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9993 5199..5557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9993.28803.1

>prot_D-dudresnayi_contig9993.28803.1 ID=prot_D-dudresnayi_contig9993.28803.1|Name=mRNA_D-dudresnayi_contig9993.28803.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=94bp
MHLLFILILVLVLLDGVASSTAFDNSLKPQEEKIVGSKTHKSVADIVAKA
TGKLDKTKAKQTKLKNKEPVKPLYKRRTYAEQKASAAKLREKA*
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mRNA from alignment at D-dudresnayi_contig9993:5199..5557-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9993.28803.1 ID=mRNA_D-dudresnayi_contig9993.28803.1|Name=mRNA_D-dudresnayi_contig9993.28803.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=359bp|location=Sequence derived from alignment at D-dudresnayi_contig9993:5199..5557- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCATTTATTGTTCATTTTAATCTTAGTTCTAGTGTTGTTGGATGGTGT
TGCATCATCTACAGCTTTTGATAATTCTTTAAAGCCACAAGAAGAAAAAA
TAGTTGGCTCGAAAACTCACAAATCTGTAGCTGATATTGTTGCTAAAGCT
ACTGGAAAGCTGGATAAAACGAAGGCTAAGCAAACAAAGCTTAAAAATAA
AGAACCTGTGAAACGTAAGAGAATGATTTCTTATATTTATTGGATTGTGA
CGTTATTCTGTCCACTGATTGCTGTTGTTGTTCTTGTTTAGCACTTTATA
AACGACGAACTTATGCTGAACAAAAAGCTTCAGCTGCAAAACTCCGCGAG
AAAGCTTAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9993:5199..5557-

>mRNA_D-dudresnayi_contig9993.28803.1 ID=mRNA_D-dudresnayi_contig9993.28803.1|Name=mRNA_D-dudresnayi_contig9993.28803.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at D-dudresnayi_contig9993:5199..5557- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCATTTATTGTTCATTTTAATCTTAGTTCTAGTGTTGTTGGATGGTGT
TGCATCATCTACAGCTTTTGATAATTCTTTAAAGCCACAAGAAGAAAAAA
TAGTTGGCTCGAAAACTCACAAATCTGTAGCTGATATTGTTGCTAAAGCT
ACTGGAAAGCTGGATAAAACGAAGGCTAAGCAAACAAAGCTTAAAAATAA
AGAACCTGTGAAACATGCATTTATTGTTCATTTTAATCTTAGTTCTAGTG
TTGTTGGATGGTGTTGCATCATCTACAGCTTTTGATAATTCTTTAAAGCC
ACAAGAAGAAAAAATAGTTGGCTCGAAAACTCACAAATCTGTAGCTGATA
TTGTTGCTAAAGCTACTGGAAAGCTGGATAAAACGAAGGCTAAGCAAACA
AAGCTTAAAAATAAAGAACCTGTGAAACCACTTTATAAACGACGAACTTA
TGCTGAACAAAAAGCTTCAGCTGCAAAACTCCGCGAGAAAGCTTAACACT
TTATAAACGACGAACTTATGCTGAACAAAAAGCTTCAGCTGCAAAACTCC
GCGAGAAAGCTTAA
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