mRNA_D-dudresnayi_contig9992.28802.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9992.28802.1
Unique NamemRNA_D-dudresnayi_contig9992.28802.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9992.28802.1 vs. uniprot
Match: A0A7S3M1L9_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1L9_9STRA)

HSP 1 Score: 150 bits (378), Expect = 6.670e-39
Identity = 111/170 (65.29%), Postives = 132/170 (77.65%), Query Frame = 3 
Query:   45 MSSRKYRSRDNNLTATVSR-----RQKEYPGEGVFTGQIIGGSRSGSGILRERNGTILYDGEWKNDKPCGYGRKYFPRTGDRHEGSYMNGERHGLGVYLWANGDKXXXXXXXXXXXXXXXXXXASSGEIXXXXXXXXXXXXDGVKILSDGSKXXXXXXXXXXXXWAEKSF 539
            M  +K + +D +    VS      RQKEY  EG++TGQ+  GSR G+G LRERNG ILY+G+WK+DKP GYG+KYFPRT DRHEGSY  G+RHGLG+YLWANGD+XXXXXXXXXXXXXXXXXXA+SGE+XXXXXXXXXX  +G+K+ SDG +       XXXXXWAEK F
Sbjct:    1 MPKKKDKLKDQDHWEPVSPGGGSWRQKEY-NEGIYTGQMKRGSRDGTGTLRERNGVILYEGDWKDDKPHGYGKKYFPRTHDRHEGSYSRGDRHGLGIYLWANGDRXXXXXXXXXXXXXXXXXXAASGEVXXXXXXXXXXTGEGIKVQSDGCRLQGAFLGXXXXXWAEKIF 169
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BLAST of mRNA_D-dudresnayi_contig9992.28802.1 vs. uniprot
Match: A0A421FEX5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FEX5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.860e-6
Identity = 29/62 (46.77%), Postives = 36/62 (58.06%), Query Frame = 3 
Query:  159 RSGSGILRERNGTILYDGEWKNDKPCGYGRKYFPRTGDRHEGSYMNGERHGLGVYLWANGDK 344
            R GSG+     G + + G W +    G+G + F  TGD HEG Y    RHG+G YLWANGDK
Sbjct:   82 RHGSGVYIVCVGHV-FKGTWVHGVFEGFGSQTFAGTGDCHEGMYHKNHRHGVGTYLWANGDK 142
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BLAST of mRNA_D-dudresnayi_contig9992.28802.1 vs. uniprot
Match: A0A0P1B098_PLAHL (2-isopropylmalate synthase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B098_PLAHL)

HSP 1 Score: 57.8 bits (138), Expect = 5.500e-6
Identity = 27/62 (43.55%), Postives = 36/62 (58.06%), Query Frame = 3 
Query:  159 RSGSGILRERNGTILYDGEWKNDKPCGYGRKYFPRTGDRHEGSYMNGERHGLGVYLWANGDK 344
            R G G+   ++G   ++GEW +    GYG + F  +   HEG Y    RHG+G YLWANGDK
Sbjct:   80 RHGKGVHTLKSGH-RFEGEWVHGDFEGYGMQIFANSSGIHEGMYRKNHRHGMGTYLWANGDK 140
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BLAST of mRNA_D-dudresnayi_contig9992.28802.1 vs. uniprot
Match: A0A662X6Y7_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X6Y7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.790e-6
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 3 
Query:  159 RSGSGILRERNGTILYDGEWKNDKPCGYGRKYFPRTGDRHEGSYMNGERHGLGVYLWANGDK 344
            R G G+   R G + ++G W +    G+G + F  TGD HEG Y    RHG+G YLW+NGDK
Sbjct:   82 RHGFGVHVVRAGHV-FEGGWVHGAFEGFGSQTFAGTGDCHEGIYRKNHRHGVGTYLWSNGDK 142
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BLAST of mRNA_D-dudresnayi_contig9992.28802.1 vs. uniprot
Match: A0A821ZQE2_9BILA (Hypothetical protein n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A821ZQE2_9BILA)

HSP 1 Score: 55.5 bits (132), Expect = 8.520e-6
Identity = 29/96 (30.21%), Postives = 46/96 (47.92%), Query Frame = 3 
Query:  129 VFTGQIIGGSRSGSGILRERNGTILYDGEWKNDK-------------------------PCGYGRKYFPRTGDRHEGSYMNGERHGLGVYLWANGD 341
            V+ G +  G R G+GI R     + Y+GEW+                            P G GR+ +  +G+ +EG ++NG+RHG GV+ W+NG+
Sbjct:   11 VYQGDVYRGRRHGTGIFRHGKSLLTYEGEWRMGHIXXXGTLQFGREGQNYYTGDFIMNIPFGKGRRQYA-SGNLYEGMWVNGKRHGYGVFSWSNGN 105
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9992.28802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S3M1L9_9STRA6.670e-3965.29Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A421FEX5_9STRA1.860e-646.77Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A0P1B098_PLAHL5.500e-643.552-isopropylmalate synthase n=1 Tax=Plasmopara hals... [more]
A0A662X6Y7_9STRA5.790e-645.16Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A821ZQE2_9BILA8.520e-630.21Hypothetical protein n=1 Tax=Rotaria socialis TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9992contigD-dudresnayi_contig9992:6336..7816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue2.1e-07
Seed eggNOG ortholog65071.PYU1_T000730
EggNOG free text desc.Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
EggNOG OGs1MIPU@121069,COG5253@1,KOG0229@2759
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons8
Model size797
Cds size753
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930962.9540875-CDS-D-dudresnayi_contig9992:6335..63631622930962.9540875-CDS-D-dudresnayi_contig9992:6335..6363Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 6336..6363 -
1690557981.576892-CDS-D-dudresnayi_contig9992:6335..63631690557981.576892-CDS-D-dudresnayi_contig9992:6335..6363Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 6336..6363 -
1622930963.0024357-CDS-D-dudresnayi_contig9992:6509..66981622930963.0024357-CDS-D-dudresnayi_contig9992:6509..6698Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 6510..6698 -
1690557981.5893652-CDS-D-dudresnayi_contig9992:6509..66981690557981.5893652-CDS-D-dudresnayi_contig9992:6509..6698Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 6510..6698 -
1622930963.0238166-CDS-D-dudresnayi_contig9992:6798..68451622930963.0238166-CDS-D-dudresnayi_contig9992:6798..6845Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 6799..6845 -
1690557981.60124-CDS-D-dudresnayi_contig9992:6798..68451690557981.60124-CDS-D-dudresnayi_contig9992:6798..6845Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 6799..6845 -
1622930963.0470564-CDS-D-dudresnayi_contig9992:6945..70411622930963.0470564-CDS-D-dudresnayi_contig9992:6945..7041Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 6946..7041 -
1690557981.6098254-CDS-D-dudresnayi_contig9992:6945..70411690557981.6098254-CDS-D-dudresnayi_contig9992:6945..7041Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 6946..7041 -
1622930963.0818722-CDS-D-dudresnayi_contig9992:7146..72171622930963.0818722-CDS-D-dudresnayi_contig9992:7146..7217Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 7147..7217 -
1690557981.6182349-CDS-D-dudresnayi_contig9992:7146..72171690557981.6182349-CDS-D-dudresnayi_contig9992:7146..7217Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 7147..7217 -
1622930963.1029756-CDS-D-dudresnayi_contig9992:7314..75431622930963.1029756-CDS-D-dudresnayi_contig9992:7314..7543Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 7315..7543 -
1690557981.6269817-CDS-D-dudresnayi_contig9992:7314..75431690557981.6269817-CDS-D-dudresnayi_contig9992:7314..7543Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 7315..7543 -
1622930963.12215-CDS-D-dudresnayi_contig9992:7606..76201622930963.12215-CDS-D-dudresnayi_contig9992:7606..7620Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 7607..7620 -
1690557981.6361392-CDS-D-dudresnayi_contig9992:7606..76201690557981.6361392-CDS-D-dudresnayi_contig9992:7606..7620Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 7607..7620 -
1622930963.142896-CDS-D-dudresnayi_contig9992:7693..77721622930963.142896-CDS-D-dudresnayi_contig9992:7693..7772Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 7694..7772 -
1690557981.6454475-CDS-D-dudresnayi_contig9992:7693..77721690557981.6454475-CDS-D-dudresnayi_contig9992:7693..7772Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 7694..7772 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930963.2361515-UTR-D-dudresnayi_contig9992:7772..78161622930963.2361515-UTR-D-dudresnayi_contig9992:7772..7816Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9992 7773..7816 -
1690557981.6546206-UTR-D-dudresnayi_contig9992:7772..78161690557981.6546206-UTR-D-dudresnayi_contig9992:7772..7816Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9992 7773..7816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9992.28802.1prot_D-dudresnayi_contig9992.28802.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9992 6336..7772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9992.28802.1

>prot_D-dudresnayi_contig9992.28802.1 ID=prot_D-dudresnayi_contig9992.28802.1|Name=mRNA_D-dudresnayi_contig9992.28802.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=251bp
MSSRKYRSRDNNLTATVSRRQKEYPGEGVFTGQIIGGSRSGSGILRERNG
TILYDGEWKNDKPCGYGRKYFPRTGDRHEGSYMNGERHGLGVYLWANGDK
YSGDWQMGLMDGRGRFEWASSGEIYNGNWRKGKMTGDGVKILSDGSKLQG
TFQNGALNGWAEKSFAEGDVYKGNFKDNSRSGYGEYVWADGRSYRGNWEA
DCMHGQGELITTAATVSSSSSIAAGRGGSSGSALPKHIDFTRIESVVHYR
*
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mRNA from alignment at D-dudresnayi_contig9992:6336..7816-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9992.28802.1 ID=mRNA_D-dudresnayi_contig9992.28802.1|Name=mRNA_D-dudresnayi_contig9992.28802.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1481bp|location=Sequence derived from alignment at D-dudresnayi_contig9992:6336..7816- (Desmarestia dudresnayi DdudBR16 monoicous)
TTGAGCTATTATTTTATGTAGATTGAAGTTATTGATTCTATGTAATGTCG
TCACGAAAATATAGAAGCAGAGATAATAATCTTACAGCGACTGTTTCTCG
TCGACAGAAAGAGTACCCTGGAGGTACGTAAATTTATTTTTATTTTGTTA
TGTGTTGTGTAACATCATACTCACCTGATTTTAATTTTGTATACAGAAGG
CGTATTTACAGTAAGTGGCAATTATATGATTTAAATATGTGAATTATTTG
TTATTTTTTTTATTATTATCTAGGGTCAAATTATCGGAGGATCAAGAAGC
GGAAGTGGTATTCTAAGAGAAAGAAATGGCACAATACTATATGATGGTGA
GTGGAAGAATGACAAACCATGTGGATATGGTAGGAAATACTTCCCACGTA
CGGGTGACCGTCATGAGGGCAGCTACATGAATGGGGAAAGACACGGATTA
GGAGTGTATTTATGGGCGAATGGGGATAAATATTCCGGTGACTGGCAAAT
GGGTATGATTTACTATCTAATATCAATATAATCTATGCTTCTATTAATGA
CATTATTCATCGTACTAATCATATGAACTACTACTATACTATACTGCAGG
ACTGATGGATGGTAGAGGGAGGTTCGAATGGGCCTCTTCTGGAGAAATAT
ACAATGGAAACTGGAGAAAAGTACGTACTATACTACAAAATGATCTACCA
TATATACCGGTAGAGAGTAATAACAGTAATATTTATCTACATATCCCTAT
TCGGTCTTGTCACTACTTTATATAGGGTAAGATGACTGGCGATGGCGTGA
AGATCCTGAGCGACGGAAGCAAGCTGCAGGGAACCTTCCAGAATGGCGCT
CTCAATGGCTGGGCGGAGAAGGTCGGCCACACCCTTACCCTACTCTACTG
CATTCTACTGTATTGTATTGTACGATAATATTGGTATTGTTTTGCCTTAT
ATGATTCCTGTTAACTTACAGAGTTTTGCAGAAGGAGATGTGTATAAAGG
AAACTTCAAGGATAACAGGTATAAACGTGACATTGAAGATGGTGATTAAT
ACACATTTTATAGCTCTAAATAATTAATACTAGTATATCTATATGTATTT
TATTACTGTATTCCTTAGTCGCAGTGGGTACGGGGAGTATGTGTGGGCTG
ACGGGCGCAGCTATCGAGGCAACTGGGAGGCAGACTGTATGCATGGGCAA
GGGGAACTGATCACCACTGCTGCAACGGTATCTAGTAGTAGCAGTATTGC
AGCTGGTCGTGGTGGTAGTAGTGGGAGTGCGCTGCCAAAGCACATAGACT
TCACCAGGTAGGAAGTCTTGAGTGTATCATAAACTGGCACCTTTTTAGTA
TGGATTGGATATGTTGGACGCATATCTTATCATAGATAATACATGAACTA
TGGACTAATTTTCTATTTGTTATTATATACGGTATGGGATGTGTTCGGAG
CAGGATCGAGTCGGTCGTGCACTACCGGTAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9992:6336..7816-

>mRNA_D-dudresnayi_contig9992.28802.1 ID=mRNA_D-dudresnayi_contig9992.28802.1|Name=mRNA_D-dudresnayi_contig9992.28802.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at D-dudresnayi_contig9992:6336..7816- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCGTCACGAAAATATAGAAGCAGAGATAATAATCTTACAGCGACTGT
TTCTCGTCGACAGAAAGAGTACCCTGGAGATGTCGTCACGAAAATATAGA
AGCAGAGATAATAATCTTACAGCGACTGTTTCTCGTCGACAGAAAGAGTA
CCCTGGAGAAGGCGTATTTACAAAGGCGTATTTACAGGTCAAATTATCGG
AGGATCAAGAAGCGGAAGTGGTATTCTAAGAGAAAGAAATGGCACAATAC
TATATGATGGTGAGTGGAAGAATGACAAACCATGTGGATATGGTAGGAAA
TACTTCCCACGTACGGGTGACCGTCATGAGGGCAGCTACATGAATGGGGA
AAGACACGGATTAGGAGTGTATTTATGGGCGAATGGGGATAAATATTCCG
GTGACTGGCAAATGGGGTCAAATTATCGGAGGATCAAGAAGCGGAAGTGG
TATTCTAAGAGAAAGAAATGGCACAATACTATATGATGGTGAGTGGAAGA
ATGACAAACCATGTGGATATGGTAGGAAATACTTCCCACGTACGGGTGAC
CGTCATGAGGGCAGCTACATGAATGGGGAAAGACACGGATTAGGAGTGTA
TTTATGGGCGAATGGGGATAAATATTCCGGTGACTGGCAAATGGGACTGA
TGGATGGTAGAGGGAGGTTCGAATGGGCCTCTTCTGGAGAAATATACAAT
GGAAACTGGAGAAAAGACTGATGGATGGTAGAGGGAGGTTCGAATGGGCC
TCTTCTGGAGAAATATACAATGGAAACTGGAGAAAAGGTAAGATGACTGG
CGATGGCGTGAAGATCCTGAGCGACGGAAGCAAGCTGCAGGGAACCTTCC
AGAATGGCGCTCTCAATGGCTGGGCGGAGAAGGGTAAGATGACTGGCGAT
GGCGTGAAGATCCTGAGCGACGGAAGCAAGCTGCAGGGAACCTTCCAGAA
TGGCGCTCTCAATGGCTGGGCGGAGAAGAGTTTTGCAGAAGGAGATGTGT
ATAAAGGAAACTTCAAGGATAACAGAGTTTTGCAGAAGGAGATGTGTATA
AAGGAAACTTCAAGGATAACAGTCGCAGTGGGTACGGGGAGTATGTGTGG
GCTGACGGGCGCAGCTATCGAGGCAACTGGGAGGCAGACTGTATGCATGG
GCAAGGGGAACTGATCACCACTGCTGCAACGGTATCTAGTAGTAGCAGTA
TTGCAGCTGGTCGTGGTGGTAGTAGTGGGAGTGCGCTGCCAAAGCACATA
GACTTCACCAGTCGCAGTGGGTACGGGGAGTATGTGTGGGCTGACGGGCG
CAGCTATCGAGGCAACTGGGAGGCAGACTGTATGCATGGGCAAGGGGAAC
TGATCACCACTGCTGCAACGGTATCTAGTAGTAGCAGTATTGCAGCTGGT
CGTGGTGGTAGTAGTGGGAGTGCGCTGCCAAAGCACATAGACTTCACCAG
GATCGAGTCGGTCGTGCACTACCGGTAAGATCGAGTCGGTCGTGCACTAC
CGGTAA
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