mRNA_D-dudresnayi_contig9992.28801.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9992.28801.1
Unique NamemRNA_D-dudresnayi_contig9992.28801.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9992.28801.1 vs. uniprot
Match: A0A7S3M1Q0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1Q0_9STRA)

HSP 1 Score: 350 bits (899), Expect = 9.780e-121
Identity = 172/200 (86.00%), Postives = 188/200 (94.00%), Query Frame = 2
Query:   53 TGLRSMETSHKTISILRCKLILVGDACVGKTALTQSFSTGGTTYPKNYLMTIGAEFNVKQVSIPNTNVVVELFLYDCAGQSIFNQLDLNTKYYENASAVMVVCNIASRESLLACSKWVQAVKSAQNQGSSLIGALVGNKCEFRDGSIDSRAEVDLLEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEDAVQ 652
            +GLRSMETSHKT+ ILRCKLILVGDACVGKTALTQSF +GGTTYPKNYLMTIGAEFNVKQV+IP TNV+VELF+YDCAGQSIFNQLDLN+KYYENASAVMVV N+A+R+SLL+C+KWV  VK+ QN G  L+GA VGNKCEFRDGSIDSRAEVD+LEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYE+ VQ
Sbjct:    3 SGLRSMETSHKTMVILRCKLILVGDACVGKTALTQSFVSGGTTYPKNYLMTIGAEFNVKQVTIPETNVIVELFIYDCAGQSIFNQLDLNSKYYENASAVMVVYNVANRDSLLSCNKWVSGVKAIQNSGVPLVGAFVGNKCEFRDGSIDSRAEVDILEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEETVQ 202          
BLAST of mRNA_D-dudresnayi_contig9992.28801.1 vs. uniprot
Match: A0A7S0SQ35_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQ35_9STRA)

HSP 1 Score: 263 bits (672), Expect = 6.040e-86
Identity = 120/202 (59.41%), Postives = 170/202 (84.16%), Query Frame = 2
Query:   53 TGLRSMETSHKTISILRCKLILVGDACVGKTALTQSFSTGGTTYPKNYLMTIGAEFNVKQVSIPNTNVVVELFLYDCAGQSIFNQLDLNTKYYENASAVMVVCNIASRESLLACSKWVQAVKSAQNQGSSLIGALVGNKCEFRDGSIDSRAEVDLLEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEDAVQVA 658
            +G+RSM++ HK++++LRCKL+++GD+CVGK++L Q F +GGTTYPKNY+MTIGA+FNVKQV IP+TN+VVEL+++DCAGQ IFNQL++N+KYYENA+AVMVV +I ++E+L + +KW+  +KSA +  S LIG LVGNK ++RDGS+DSRAEV   +A+  ++ LG+ YFE SAA+NIGV  PF ++A EFY++YED ++ A
Sbjct:   14 SGIRSMDSKHKSLTVLRCKLVIIGDSCVGKSSLLQVFQSGGTTYPKNYMMTIGADFNVKQVPIPDTNIVVELYIFDCAGQPIFNQLEMNSKYYENAAAVMVVYDIGNQETLQSTTKWLTGLKSAVSNPSDLIGVLVGNKSDYRDGSVDSRAEVVKEDAQRFSKDLGLAYFEASAASNIGVTEPFLHVATEFYKKYEDTLRKA 215          
BLAST of mRNA_D-dudresnayi_contig9992.28801.1 vs. uniprot
Match: A0A7S2XVJ0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ0_9STRA)

HSP 1 Score: 216 bits (551), Expect = 1.770e-67
Identity = 109/214 (50.93%), Postives = 152/214 (71.03%), Query Frame = 2
Query:   17 IISINPFKTMATTGLRSMETSHKTISILRCKLILVGDACVGKTALTQSFSTGGTTYPKNYLMTIGAEFNVKQVSIPNTNVVVELFLYDCAGQSIFNQLDLNTKYYENASAVMVVCNIASRESLLACSKWVQAVKSAQNQGSSLIGALVGNKCEFRDGSIDSRAEVDLLEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEDAVQVA 658
            +++++   T   + LRSME++HK + +LRCK++LVGDACVGK+AL Q F  GG  YPKNY+MT G  F VKQV+IP+TN  VEL+L+DCAGQSIFNQ + N K +EN S V+VV ++ +R+S  +C+KW+Q V+S + Q S + G LV NK + R+G I+SRA V   E +  A+   + +FETSAA    VDAPF +IA +F+++YE  VQ A
Sbjct:   15 VVTLDAAVTGFKSALRSMESAHKPLLMLRCKVVLVGDACVGKSALVQMFHGGGQRYPKNYVMTTGVGFCVKQVNIPDTNCAVELYLFDCAGQSIFNQREQNLKSWENTSYVVVVYDVGNRDSFQSCAKWLQGVRSTR-QSSMIPGVLVANKSDLREGGINSRAAVSDEEGRNFAQENSLEFFETSAAEAKNVDAPFNFIASQFHQKYEQTVQRA 227          
BLAST of mRNA_D-dudresnayi_contig9992.28801.1 vs. uniprot
Match: D7FJQ1_ECTSI (IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ1_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 2.540e-63
Identity = 98/203 (48.28%), Postives = 145/203 (71.43%), Query Frame = 2
Query:   53 TGLRSMETSHKTISILRCKLILVGDACVGKTALTQSFSTGGTTYPKNYLMTIGAEFNVKQVSIPNTNVVVELFLYDCAGQSIFNQLDLNTKYYENASAVMVVCNIASRESLLACSKWVQAVKSAQNQGSS-LIGALVGNKCEFRDGSIDSRAEVDLLEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEDAVQVA 658
            +G+RSM+T+H+T  +LR K+++VGDACVGKT++ Q F +GG  YPKNY+MTIG +F VKQV +P T+ VVELFL+DC GQ +FN+L+    YYENA+ V VV ++++R+S  +C +W+Q V++A    S+ L G ++ NK + R+G I++RA V+  E +  A   G+ YFETSAA   G+DAPF ++A  F+  YE  ++ A
Sbjct:   18 SGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATSFHETYEKTIEGA 220          
BLAST of mRNA_D-dudresnayi_contig9992.28801.1 vs. uniprot
Match: F0WZZ3_9STRA (IFT27 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WZZ3_9STRA)

HSP 1 Score: 195 bits (495), Expect = 4.220e-59
Identity = 104/213 (48.83%), Postives = 144/213 (67.61%), Query Frame = 2
Query:   23 SINPFKTMATTGLRSMETSHKTISILRCKLILVGDACVGKTALTQSFSTGGTTYPKNYLMTIGAEFNVKQVSIPNTNVVVELFLYDCAGQSIFNQLDLNTKYYENASAVMVVCNIASRESLLACSKWVQAVKSAQNQGSSLIGALVGNKCEFRDGSI-DSRAEVDLLEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEDAVQVA 658
            S   +K +  + +RSMET+H++ ++LRCK+ +VGDA VGKTAL Q + +GG  +PKNYL TI  E +VK V IPNTNV+VELFL DC GQS+FNQ +    +YE AS VM+V +++++ES  + SKW+Q VK A  +   + G LVG K + R  +I DS    D   A+E A++  M YFE SA  N  ++APF +IAE FYR+Y+ AV+ A
Sbjct:   18 SAQHYKLINMSAVRSMETTHRSTTVLRCKVAIVGDATVGKTALVQVYKSGGQEFPKNYLTTIDVELSVKSVRIPNTNVIVELFLIDCPGQSVFNQREFGASHYEGASMVMIVFDVSNKESYKSISKWLQVVKDASEKHK-VTGVLVGAKTDLRRPNILDSVTSND---AQEWAKTNEMEYFELSAHQNTDIEAPFLHIAETFYRKYQKAVEGA 226          
BLAST of mRNA_D-dudresnayi_contig9992.28801.1 vs. uniprot
Match: A0A8K1FND3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FND3_PYTOL)

HSP 1 Score: 193 bits (490), Expect = 1.030e-58
Identity = 100/202 (49.50%), Postives = 136/202 (67.33%), Query Frame = 2
Query:   53 TGLRSMETSHKTISILRCKLILVGDACVGKTALTQSFSTGGTTYPKNYLMTIGAEFNVKQVSIPNTNVVVELFLYDCAGQSIFNQLDLNTKYYENASAVMVVCNIASRESLLACSKWVQAVKSAQNQGSSLIGALVGNKCEFRDGSIDSRAEVDLLEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEDAVQVA 658
            + LRSMET+HK+ ++LRC++ +VGDA VGKTAL Q   + G  YPKNY+MT G E  VK V IP TNVVVEL+L+DCAGQSIFNQ +    +Y+NAS  +VV ++ ++ES  A +KW Q V  A +   ++ G L+ NK + R+ + D+   +   + +E AE   M YFE SA  N G+DAPF YIAE FY++Y+ A Q A
Sbjct:    2 SALRSMETTHKSTTVLRCRVAVVGDATVGKTALLQVLKSNGHEYPKNYVMTSGVELQVKAVPIPETNVVVELYLFDCAGQSIFNQREFGALHYKNASMALVVYDVNNKESFKASTKWFQDVVGA-SPNHNIPGVLLANKTDLRENNRDA---ISTKDGQELAERNDMKYFECSAQQNTGIDAPFAYIAEWFYKKYQSAAQRA 199          
BLAST of mRNA_D-dudresnayi_contig9992.28801.1 vs. uniprot
Match: A0A835ZCC9_9STRA (IFT27, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC9_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.170e-58
Identity = 93/197 (47.21%), Postives = 137/197 (69.54%), Query Frame = 2
Query:   68 METSHKTISILRCKLILVGDACVGKTALTQSFSTGGTTYPKNYLMTIGAEFNVKQVSIPNTNVVVELFLYDCAGQSIFNQLDLNTKYYENASAVMVVCNIASRESLLACSKWVQAVKSAQNQGSSLIGALVGNKCEFRDGSIDSRAEVDLLEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEDAVQVA 658
            ME  HK + +LR K+++VGDA VGKTA+TQ   + G  YPKNYLMT   +F+VKQ+ +P  N  VELFL+DCAGQ +FN+LDLN  +++NAS V VV ++ +RES  +C +W+Q V++ +   + + G L+G+K + R+GS   RA VD  E    A+  G+ YFE SAA + GV+APFQ++A++F+  YE +++ A
Sbjct:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGS---RAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKA 194          
BLAST of mRNA_D-dudresnayi_contig9992.28801.1 vs. uniprot
Match: A0A0N7L680_PLAHL (Intraflagellar transport protein 27 homolog n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L680_PLAHL)

HSP 1 Score: 191 bits (486), Expect = 4.160e-58
Identity = 97/202 (48.02%), Postives = 140/202 (69.31%), Query Frame = 2
Query:   53 TGLRSMETSHKTISILRCKLILVGDACVGKTALTQSFSTGGTTYPKNYLMTIGAEFNVKQVSIPNTNVVVELFLYDCAGQSIFNQLDLNTKYYENASAVMVVCNIASRESLLACSKWVQAVKSAQNQGSSLIGALVGNKCEFRDGSIDSRAEVDLLEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEDAVQVA 658
            +GLRSMET+HK+ ++LRCK+ +VG+A VGKTA+ Q   + G  +PKNY+MT   E + K +SIP+TNVVVEL+L+DCAGQSIFNQLD  T +Y+ AS  +VV ++ ++ES  +CSKW Q V+ A +   ++ G L+ NK + R    ++R  +   EA+E A+   M +FE SA  N GV+APF YIA+ F+++Y+   Q A
Sbjct:    2 SGLRSMETTHKSTTVLRCKVAIVGEATVGKTAVVQILKSNGHEFPKNYVMTSDVELSTKSISIPDTNVVVELYLFDCAGQSIFNQLDFGTVHYKGASIALVVFDVNNKESFKSCSKWYQDVRDA-SPNHNIPGVLLANKTDLR---YNNRDAISTKEAEEFAKRNDMKFFECSAQQNAGVEAPFVYIADWFHKKYQATTQRA 199          
BLAST of mRNA_D-dudresnayi_contig9992.28801.1 vs. uniprot
Match: A0A5D6YIH3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YIH3_9STRA)

HSP 1 Score: 190 bits (482), Expect = 1.570e-57
Identity = 100/202 (49.50%), Postives = 137/202 (67.82%), Query Frame = 2
Query:   53 TGLRSMETSHKTISILRCKLILVGDACVGKTALTQSFSTGGTTYPKNYLMTIGAEFNVKQVSIPNTNVVVELFLYDCAGQSIFNQLDLNTKYYENASAVMVVCNIASRESLLACSKWVQAVKSAQNQGSSLIGALVGNKCEFRDGSIDSRAEVDLLEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEDAVQVA 658
            + LRSMET+HK+ +ILRCK+ +VGDA VGKTAL Q   + G  YPKNY  T   E  VK V IP++NV+VEL+L+DCAGQSIFNQLD  T +Y+ AS  +VV ++ ++ES  +CSKW Q VK A +   ++ G L+ NK + R+ + D+   +   +A++  E     YFETSA  N G++APF YIAE FY++Y+ A Q A
Sbjct:    2 SALRSMETTHKSTAILRCKVAVVGDATVGKTALLQVLKSSGHEYPKNY--TSDVELCVKSVPIPDSNVIVELYLFDCAGQSIFNQLDFGTSHYKGASLAVVVFDVNNKESFKSCSKWYQDVKDA-SPTHNIPGVLIANKTDLRENNRDA---ISAKDAEDFCERNDFKYFETSAQQNTGIEAPFAYIAEWFYKKYQSAAQRA 197          
BLAST of mRNA_D-dudresnayi_contig9992.28801.1 vs. uniprot
Match: A0A225UZA4_9STRA (Intraflagellar transport protein 27 n=6 Tax=Phytophthora TaxID=4783 RepID=A0A225UZA4_9STRA)

HSP 1 Score: 189 bits (481), Expect = 2.370e-57
Identity = 98/202 (48.51%), Postives = 136/202 (67.33%), Query Frame = 2
Query:   53 TGLRSMETSHKTISILRCKLILVGDACVGKTALTQSFSTGGTTYPKNYLMTIGAEFNVKQVSIPNTNVVVELFLYDCAGQSIFNQLDLNTKYYENASAVMVVCNIASRESLLACSKWVQAVKSAQNQGSSLIGALVGNKCEFRDGSIDSRAEVDLLEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEDAVQVA 658
            + LRSMET+HK+ ++LRCK+ +VGDA VGKTAL Q   + G  YPKNY+MT   E + K + IP +NV VEL+L+DCAGQSIFNQLD  T +Y+ AS  +VV ++ ++ES  +CSKW Q V+ A +   ++ G L+ NK + R    ++R  +   EA+E AE   + YFE SA  N GV+APF YIA+ F ++Y+ A Q A
Sbjct:    2 SALRSMETTHKSTTVLRCKVAVVGDATVGKTALLQVLKSNGHEYPKNYVMTSDVELSTKSIPIPESNVAVELYLFDCAGQSIFNQLDFGTVHYKGASMALVVFDVNNKESFKSCSKWYQDVRDA-SPNHNIPGVLLANKTDLR---YNNRDAISTKEAEEFAERNDLKYFECSAQQNSGVEAPFAYIADWFNKKYQTATQRA 199          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9992.28801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3M1Q0_9STRA9.780e-12186.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0SQ35_9STRA6.040e-8659.41Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2XVJ0_9STRA1.770e-6750.93Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7FJQ1_ECTSI2.540e-6348.28IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus s... [more]
F0WZZ3_9STRA4.220e-5948.83IFT27 putative n=1 Tax=Albugo laibachii Nc14 TaxID... [more]
A0A8K1FND3_PYTOL1.030e-5849.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A835ZCC9_9STRA1.170e-5847.21IFT27, ras superfamily GTPase n=1 Tax=Tribonema mi... [more]
A0A0N7L680_PLAHL4.160e-5848.02Intraflagellar transport protein 27 homolog n=1 Ta... [more]
A0A5D6YIH3_9STRA1.570e-5749.50Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A225UZA4_9STRA2.370e-5748.51Intraflagellar transport protein 27 n=6 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9992contigD-dudresnayi_contig9992:3532..5031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.7
Seed ortholog evalue6.6e-52
Seed eggNOG ortholog2880.D7FJQ1
Preferred nameIFT27
KEGG koko:K07934
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007264,GO:0007275,GO:0007399,GO:0007423,GO:0008104,GO:0008150,GO:0009987,GO:0010970,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022008,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030705,GO:0030990,GO:0030992,GO:0031175,GO:0031344,GO:0031410,GO:0031503,GO:0031514,GO:0031982,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035556,GO:0035639,GO:0035720,GO:0035721,GO:0035735,GO:0036094,GO:0036126,GO:0042073,GO:0042490,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043583,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0046907,GO:0048468,GO:0048513,GO:0048666,GO:0048699,GO:0048731,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060113,GO:0060119,GO:0060122,GO:0060271,GO:0060491,GO:0065007,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0090102,GO:0097159,GO:0097223,GO:0097225,GO:0097228,GO:0097367,GO:0097542,GO:0097708,GO:0097729,GO:0099111,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1901265,GO:1901363,GO:1902017,GO:1902115
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0079@1,KOG0079@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04031
Hectar predicted targeting categoryother localisation
Exons7
Model size700
Cds size624
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930963.4812014-UTR-D-dudresnayi_contig9992:3531..35741622930963.4812014-UTR-D-dudresnayi_contig9992:3531..3574Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9992 3532..3574 +
1690557981.7114935-UTR-D-dudresnayi_contig9992:3531..35741690557981.7114935-UTR-D-dudresnayi_contig9992:3531..3574Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9992 3532..3574 +
1622930963.6322877-UTR-D-dudresnayi_contig9992:4998..50311622930963.6322877-UTR-D-dudresnayi_contig9992:4998..5031Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9992 4999..5031 +
1690557981.8293338-UTR-D-dudresnayi_contig9992:4998..50311690557981.8293338-UTR-D-dudresnayi_contig9992:4998..5031Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9992 4999..5031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930963.4949663-CDS-D-dudresnayi_contig9992:3574..36531622930963.4949663-CDS-D-dudresnayi_contig9992:3574..3653Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 3575..3653 +
1690557981.7346127-CDS-D-dudresnayi_contig9992:3574..36531690557981.7346127-CDS-D-dudresnayi_contig9992:3574..3653Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 3575..3653 +
1622930963.5151365-CDS-D-dudresnayi_contig9992:3715..37951622930963.5151365-CDS-D-dudresnayi_contig9992:3715..3795Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 3716..3795 +
1690557981.756962-CDS-D-dudresnayi_contig9992:3715..37951690557981.756962-CDS-D-dudresnayi_contig9992:3715..3795Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 3716..3795 +
1622930963.5333886-CDS-D-dudresnayi_contig9992:3863..39891622930963.5333886-CDS-D-dudresnayi_contig9992:3863..3989Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 3864..3989 +
1690557981.7749007-CDS-D-dudresnayi_contig9992:3863..39891690557981.7749007-CDS-D-dudresnayi_contig9992:3863..3989Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 3864..3989 +
1622930963.5518286-CDS-D-dudresnayi_contig9992:4113..41951622930963.5518286-CDS-D-dudresnayi_contig9992:4113..4195Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 4114..4195 +
1690557981.78752-CDS-D-dudresnayi_contig9992:4113..41951690557981.78752-CDS-D-dudresnayi_contig9992:4113..4195Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 4114..4195 +
1622930963.5720775-CDS-D-dudresnayi_contig9992:4397..45611622930963.5720775-CDS-D-dudresnayi_contig9992:4397..4561Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 4398..4561 +
1690557981.7991362-CDS-D-dudresnayi_contig9992:4397..45611690557981.7991362-CDS-D-dudresnayi_contig9992:4397..4561Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 4398..4561 +
1622930963.5905216-CDS-D-dudresnayi_contig9992:4772..48311622930963.5905216-CDS-D-dudresnayi_contig9992:4772..4831Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 4773..4831 +
1690557981.8075578-CDS-D-dudresnayi_contig9992:4772..48311690557981.8075578-CDS-D-dudresnayi_contig9992:4772..4831Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 4773..4831 +
1622930963.6125174-CDS-D-dudresnayi_contig9992:4964..49981622930963.6125174-CDS-D-dudresnayi_contig9992:4964..4998Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 4965..4998 +
1690557981.8178914-CDS-D-dudresnayi_contig9992:4964..49981690557981.8178914-CDS-D-dudresnayi_contig9992:4964..4998Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9992 4965..4998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9992.28801.1prot_D-dudresnayi_contig9992.28801.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9992 3575..4998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9992.28801.1

>prot_D-dudresnayi_contig9992.28801.1 ID=prot_D-dudresnayi_contig9992.28801.1|Name=mRNA_D-dudresnayi_contig9992.28801.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=208bp
MATTGLRSMETSHKTISILRCKLILVGDACVGKTALTQSFSTGGTTYPKN
YLMTIGAEFNVKQVSIPNTNVVVELFLYDCAGQSIFNQLDLNTKYYENAS
AVMVVCNIASRESLLACSKWVQAVKSAQNQGSSLIGALVGNKCEFRDGSI
DSRAEVDLLEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYED
AVQVARD*
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mRNA from alignment at D-dudresnayi_contig9992:3532..5031+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9992.28801.1 ID=mRNA_D-dudresnayi_contig9992.28801.1|Name=mRNA_D-dudresnayi_contig9992.28801.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1500bp|location=Sequence derived from alignment at D-dudresnayi_contig9992:3532..5031+ (Desmarestia dudresnayi DdudBR16 monoicous)
TCCAGGTTTATAGCTCATTATCTCTATAAATCCTTTCAAAACCATGGCAA CAACTGGATTACGTAGTATGGAAACCAGTCATAAGACTATTTCCATTTTA CGATGCAAGCTAATTTTAGTAGGTGAGTTGTGCTTCTACATTGGATTCGC AGTACGGCGGTATGTAAAATATGTGTGTATATAGGTGATGCATGTGTTGG AAAGACTGCTTTGACACAAAGCTTTTCCACTGGAGGAACAACATATCCTA AGAACTATCTTATGGTAAGTATATCTTGATTAATTGTGTCTACAATGAAA TTTTGTCTTATCTACACTTATTGCGTATTCAGACTATAGGAGCGGAGTTT AATGTAAAACAAGTGTCAATCCCAAATACCAATGTCGTTGTGGAGTTATT TTTATATGACTGTGCGGGTCAATCAATATTCAACCAACTTGATTTAAATA CCAAATATGTAAGACCTAGCCTTGCAGTCAGTACCTTCATTTTACTTTAT CAATAGTAGTGTTCTAGAATATTAAATCCTTTATTGATGTGATATTGTAT TTCTTTGTTGTTTGTTTTTTCTTTCAATATAGTATGAGAATGCTTCTGCA GTGATGGTGGTGTGCAATATTGCTAGCAGAGAGTCCCTGCTGGCTTGCAG CAAGTGGGTGCAAGGTGAATACTGTACTATCTATACTATACTGTAATGTA GTATTATACATACCGGTACTGTACTATTGTATTATGCATGCCGGTACTGT TATACAGTATAACAATATATATATATATATATATATATATATATATATAT GAATATTGAATATAGTGCAACACTACTAACTACTATAATATATTCTTACT TGCCTACTCCTACTAGCTGTGAAATCAGCACAGAATCAAGGTTCGAGTTT AATCGGCGCTTTAGTAGGGAACAAGTGTGAGTTCCGCGACGGCTCGATTG ACTCCCGGGCCGAGGTGGATCTGCTGGAGGCGAAGGAGACTGCTGAGAGT CTCGGTATGACGTACTTTGAGACTTCGGCGGTAAGTCATTAGCTAGCTAG TTCTGTGGTAATAATACTAGTCGTAGAAGTAGTAGTGGTAGTAGTAGCAT CTTATCTTATATGGAAGTAAATATCTCTTATCTTAGTAATATCTCTACTA TATCGAGTAATTTATTATGTGTACTCACATCTCTATTACTACTATATTTT TGACACACATGTATATGTATATATATATATATGTTTTATAGGCTAATAAC ATCGGCGTGGATGCACCTTTTCAGTATATTGCGGAGGAATTCTACCGGAG GTGAGATACTTGTACTGTGCATAATATATAAGTATATATATGGCATACAA ACTAATTACCTATATTCCTTCGCTACTACTACCACTACCATTAAGAACTA AGCATGTAACTATATAATACACTTACACTATAGATACGAGGATGCAGTGC AAGTAGCAAGAGATTAATATATATGGATAAGTCTATACTTTCACAGTGAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9992:3532..5031+

>mRNA_D-dudresnayi_contig9992.28801.1 ID=mRNA_D-dudresnayi_contig9992.28801.1|Name=mRNA_D-dudresnayi_contig9992.28801.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at D-dudresnayi_contig9992:3532..5031+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCAACAACTGGATTACGTAGTATGGAAACCAGTCATAAGACTATTTC
CATTTTACGATGCAAGCTAATTTTAGTAGATGGCAACAACTGGATTACGT
AGTATGGAAACCAGTCATAAGACTATTTCCATTTTACGATGCAAGCTAAT
TTTAGTAGGTGATGCATGTGTTGGAAAGACTGCTTTGACACAAAGCTTTT
CCACTGGAGGAACAACATATCCTAAGAACTATCTTATGGTGATGCATGTG
TTGGAAAGACTGCTTTGACACAAAGCTTTTCCACTGGAGGAACAACATAT
CCTAAGAACTATCTTATGACTATAGGAGCGGAGTTTAATGTAAAACAAGT
GTCAATCCCAAATACCAATGTCGTTGTGGAGTTATTTTTATATGACTGTG
CGGGTCAATCAATATTCAACCAACTTGATTTAAATACCAAATATACTATA
GGAGCGGAGTTTAATGTAAAACAAGTGTCAATCCCAAATACCAATGTCGT
TGTGGAGTTATTTTTATATGACTGTGCGGGTCAATCAATATTCAACCAAC
TTGATTTAAATACCAAATATTATGAGAATGCTTCTGCAGTGATGGTGGTG
TGCAATATTGCTAGCAGAGAGTCCCTGCTGGCTTGCAGCAAGTGGGTGCA
AGTATGAGAATGCTTCTGCAGTGATGGTGGTGTGCAATATTGCTAGCAGA
GAGTCCCTGCTGGCTTGCAGCAAGTGGGTGCAAGCTGTGAAATCAGCACA
GAATCAAGGTTCGAGTTTAATCGGCGCTTTAGTAGGGAACAAGTGTGAGT
TCCGCGACGGCTCGATTGACTCCCGGGCCGAGGTGGATCTGCTGGAGGCG
AAGGAGACTGCTGAGAGTCTCGGTATGACGTACTTTGAGACTTCGGCGCT
GTGAAATCAGCACAGAATCAAGGTTCGAGTTTAATCGGCGCTTTAGTAGG
GAACAAGTGTGAGTTCCGCGACGGCTCGATTGACTCCCGGGCCGAGGTGG
ATCTGCTGGAGGCGAAGGAGACTGCTGAGAGTCTCGGTATGACGTACTTT
GAGACTTCGGCGGCTAATAACATCGGCGTGGATGCACCTTTTCAGTATAT
TGCGGAGGAATTCTACCGGAGGCTAATAACATCGGCGTGGATGCACCTTT
TCAGTATATTGCGGAGGAATTCTACCGGAGATACGAGGATGCAGTGCAAG
TAGCAAGAGATTAAATACGAGGATGCAGTGCAAGTAGCAAGAGATTAA
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