mRNA_D-dudresnayi_contig9973.28781.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9973.28781.1
Unique NamemRNA_D-dudresnayi_contig9973.28781.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9973.28781.1 vs. uniprot
Match: A0A8H4F310_MUCCL (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=2 Tax=Mucoraceae TaxID=34489 RepID=A0A8H4F310_MUCCL)

HSP 1 Score: 87.4 bits (215), Expect = 1.200e-20
Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 2
Query:   23 INMEKASMQDMMDNLVPIHVRDDCANVLIPLNKCRRQNMYLPWHCEHERHSYEICLYKEYERRKEIKRSDGK 238
            +++EKAS QDM  + +P+  RD CAN+LIPLNKCR +  YLPW CE ERH+YE C Y +++RR + +++  +
Sbjct:    2 VSVEKASQQDMAKSRIPLEYRDYCANLLIPLNKCRGETFYLPWKCETERHAYEKCQYDDFKRRMKEQQAKAE 73          
BLAST of mRNA_D-dudresnayi_contig9973.28781.1 vs. uniprot
Match: A0A0C9UX21_SPHS4 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=2 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9UX21_SPHS4)

HSP 1 Score: 87.0 bits (214), Expect = 2.060e-20
Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = 2
Query:   38 ASMQDMMDNLVPIHVRDDCANVLIPLNKCRRQNMYLPWHCEHERHSYEICLYKEYERR-KEI--KRSDG 235
            AS ++M  N +P+  RD+C+ +LIPLNKCRRQN+YLPWHC+HERH YE C Y ++ RR KE+  +R +G
Sbjct:    8 ASQEEMKANRLPLGYRDNCSALLIPLNKCRRQNLYLPWHCDHERHEYERCQYFDFLRRSKELSKQRQEG 76          
BLAST of mRNA_D-dudresnayi_contig9973.28781.1 vs. uniprot
Match: A0A168GLU9_MUCCL (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=8 Tax=Mucorineae TaxID=1344963 RepID=A0A168GLU9_MUCCL)

HSP 1 Score: 85.5 bits (210), Expect = 6.540e-20
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 2
Query:   32 EKASMQDMMDNLVPIHVRDDCANVLIPLNKCRRQNMYLPWHCEHERHSYEICLYKEYERRKEIKRSDGK 238
            EKAS QDM  + +P+  RD CAN+LIPLNKCR +  YLPW CE ERH+YE C Y +++RR + +++  +
Sbjct:    3 EKASQQDMAKSRIPLEYRDYCANLLIPLNKCRGETFYLPWKCETERHAYEKCQYDDFKRRMKEQQAKAE 71          
BLAST of mRNA_D-dudresnayi_contig9973.28781.1 vs. uniprot
Match: A0A166H9N9_DAUCS (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166H9N9_DAUCS)

HSP 1 Score: 85.5 bits (210), Expect = 1.320e-19
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 2
Query:   38 ASMQDMMDNLVPIHVRDDCANVLIPLNKCRRQNMYLPWHCEHERHSYEICLYK----------EYERRKEIKRSDG 235
            A+ Q+M+DN VPI  RD CA++LIPLNKCR+   YLPW CE+ERHSYE C Y+          + ++ +E+K+SDG
Sbjct:   14 ATQQEMVDNRVPIPYRDQCAHLLIPLNKCRQSEFYLPWKCENERHSYEKCEYELVMERMLQMQKIKQNQELKKSDG 89          
BLAST of mRNA_D-dudresnayi_contig9973.28781.1 vs. uniprot
Match: I0Z2A3_COCSC (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z2A3_COCSC)

HSP 1 Score: 82.8 bits (203), Expect = 8.900e-19
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 2
Query:   38 ASMQDMMDNLVPIHVRDDCANVLIPLNKCRRQNMYLPWHCEHERHSYEICLYKEYERR 211
            AS  D+ +  + I  RD CA++LIPLN CRR+N YLPW CEHERH+YE C Y+EY+RR
Sbjct:   11 ASQADLQNAKIDIGYRDFCAHLLIPLNACRRKNFYLPWRCEHERHAYEKCEYREYQRR 68          
BLAST of mRNA_D-dudresnayi_contig9973.28781.1 vs. uniprot
Match: G4N371_MAGO7 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=3 Tax=Pyricularia TaxID=48558 RepID=G4N371_MAGO7)

HSP 1 Score: 82.8 bits (203), Expect = 1.050e-18
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 2
Query:   35 KASMQDMMDNLVPIHVRDDCANVLIPLNKCRRQNMYLPWHCEHERHSYEICLYKEYERRKEIKRSD 232
            KA+ ++M D ++P+  RD+CAN+LIPLN+CR+   YLPW CE+ERHSYE C Y E++ R  +K+ D
Sbjct:   11 KATREEMRDAMLPLAYRDNCANLLIPLNRCRKDTYYLPWKCENERHSYEKCQYDEFKLR--VKKMD 74          
BLAST of mRNA_D-dudresnayi_contig9973.28781.1 vs. uniprot
Match: M7SCV2_EUTLA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=4 Tax=Xylariales TaxID=37989 RepID=M7SCV2_EUTLA)

HSP 1 Score: 82.8 bits (203), Expect = 1.070e-18
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 2
Query:   35 KASMQDMMDNLVPIHVRDDCANVLIPLNKCRRQNMYLPWHCEHERHSYEICLYKEYERR----KEIKRSDG 235
            KA+ Q+M D  +PI  RD CAN+LIPLN+CR    YLPW CE+ERHSYE C Y+E+++R     E++ + G
Sbjct:   12 KATRQEMADAKLPIAYRDSCANLLIPLNRCRVDTYYLPWKCENERHSYEKCQYEEFKKRVAKMNELREAKG 82          
BLAST of mRNA_D-dudresnayi_contig9973.28781.1 vs. uniprot
Match: A0A254TR57_ASPNG (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=27 Tax=Aspergillus TaxID=5052 RepID=A0A254TR57_ASPNG)

HSP 1 Score: 82.4 bits (202), Expect = 1.790e-18
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   38 ASMQDMMDNLVPIHVRDDCANVLIPLNKCRRQNMYLPWHCEHERHSYEICLYKEYERR----KEIKRSDG 235
            AS Q+M D  +P+  RD CA +LIPLN+CR+Q  YLPW CE ERHSYE C Y+E+++R    +E++ + G
Sbjct:   19 ASRQEMSDARLPLQYRDSCAGLLIPLNRCRQQEYYLPWKCEDERHSYEKCQYEEFKKRVAKMEELRAAKG 88          
BLAST of mRNA_D-dudresnayi_contig9973.28781.1 vs. uniprot
Match: A0A0D2B5Z5_9EURO (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Exophiala spinifera TaxID=91928 RepID=A0A0D2B5Z5_9EURO)

HSP 1 Score: 82.4 bits (202), Expect = 1.840e-18
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 2
Query:   38 ASMQDMMDNLVPIHVRDDCANVLIPLNKCRRQNMYLPWHCEHERHSYEICLYKEYERR 211
            AS + M +  +P+  RD CAN+LIPLNKCR +N ++PW CEHERHSYE C Y+E+++R
Sbjct:   20 ASREAMSEARLPLQYRDSCANLLIPLNKCRHENAWMPWKCEHERHSYEKCQYEEFKKR 77          
BLAST of mRNA_D-dudresnayi_contig9973.28781.1 vs. uniprot
Match: A0A5P1EYX2_ASPOF (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EYX2_ASPOF)

HSP 1 Score: 82.0 bits (201), Expect = 3.410e-18
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 2
Query:   38 ASMQDMMDNLVPIHVRDDCANVLIPLNKCRRQNMYLPWHCEHERHSYEICLY-------------KEYERRKEIKRSDGK*LTYSI 256
            A+ Q+MM+N VPI  RD CA++LIPLNKCR + +YLPW CE+ERHSYE C Y             +E E RK+ K   G+ +   I
Sbjct:   17 ATQQEMMENRVPIPYRDQCAHLLIPLNKCRSKELYLPWKCENERHSYEKCEYELVMERMLQMQKIRELEERKKQKGKIGQGVAIPI 102          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9973.28781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H4F310_MUCCL1.200e-2050.00NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A0C9UX21_SPHS42.060e-2056.52NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A168GLU9_MUCCL6.540e-2052.17NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A166H9N9_DAUCS1.320e-1951.32NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
I0Z2A3_COCSC8.900e-1960.34NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
G4N371_MAGO71.050e-1853.03NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
M7SCV2_EUTLA1.070e-1852.11NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A254TR57_ASPNG1.790e-1851.43NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A0D2B5Z5_9EURO1.840e-1856.90NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A5P1EYX2_ASPOF3.410e-1847.67NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9973contigD-dudresnayi_contig9973:441..817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score83.2
Seed ortholog evalue5.4e-14
Seed eggNOG ortholog36080.S2J3Z9
KEGG koko:K03963
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00147
EggNOG free text desc.Mortierella verticillata NRRL 6337 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 7 (75 aa)
EggNOG OGs1GUQM@112252,3A5T3@33154,3P545@4751,KOG3468@1,KOG3468@2759
COG Functional cat.C
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Exons2
Model size311
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9973.28781.1prot_D-dudresnayi_contig9973.28781.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9973 469..747 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930960.0660894-UTR-D-dudresnayi_contig9973:440..4681622930960.0660894-UTR-D-dudresnayi_contig9973:440..468Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9973 441..468 +
1690557980.6808128-UTR-D-dudresnayi_contig9973:440..4681690557980.6808128-UTR-D-dudresnayi_contig9973:440..468Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9973 441..468 +
1622930960.1295683-UTR-D-dudresnayi_contig9973:747..8171622930960.1295683-UTR-D-dudresnayi_contig9973:747..817Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9973 748..817 +
1690557980.715914-UTR-D-dudresnayi_contig9973:747..8171690557980.715914-UTR-D-dudresnayi_contig9973:747..817Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9973 748..817 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930960.087243-CDS-D-dudresnayi_contig9973:468..5601622930960.087243-CDS-D-dudresnayi_contig9973:468..560Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9973 469..560 +
1690557980.6915824-CDS-D-dudresnayi_contig9973:468..5601690557980.6915824-CDS-D-dudresnayi_contig9973:468..560Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9973 469..560 +
1622930960.1113052-CDS-D-dudresnayi_contig9973:626..7471622930960.1113052-CDS-D-dudresnayi_contig9973:626..747Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9973 627..747 +
1690557980.704668-CDS-D-dudresnayi_contig9973:626..7471690557980.704668-CDS-D-dudresnayi_contig9973:626..747Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9973 627..747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9973.28781.1

>prot_D-dudresnayi_contig9973.28781.1 ID=prot_D-dudresnayi_contig9973.28781.1|Name=mRNA_D-dudresnayi_contig9973.28781.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=71bp
MEKASMQDMMDNLVPIHVRDDCANVLIPLNKCRRQNMYLPWHCEHERHSY
EICLYKEYERRKEIKRSDGK*
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mRNA from alignment at D-dudresnayi_contig9973:441..817+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9973.28781.1 ID=mRNA_D-dudresnayi_contig9973.28781.1|Name=mRNA_D-dudresnayi_contig9973.28781.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=377bp|location=Sequence derived from alignment at D-dudresnayi_contig9973:441..817+ (Desmarestia dudresnayi DdudBR16 monoicous)
TTAACATTTCCAACTCAAATATATAAACATGGAGAAGGCTAGTATGCAAG ACATGATGGACAATTTGGTTCCCATTCACGTTCGCGATGATTGTGCCAAC GTTCTGATTCCTCTGAACAAGTCAGTTGTCTGAGATTTTTGTTGTAATTT TATGATTTTAATGTGATATATTTCCTTTTGTCTTAGGTGTCGGCGTCAGA ATATGTATCTTCCCTGGCACTGTGAGCATGAGAGACACAGCTACGAAATT TGTTTGTACAAAGAGTATGAACGAAGGAAAGAAATTAAGAGATCTGATGG TAAATAACTAACTTATTCTATTCTTCATAAGTTAATTTTTCTTTCTTTGT AGTAATGAATAAAAAATCAGCTCAAAC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9973:441..817+

>mRNA_D-dudresnayi_contig9973.28781.1 ID=mRNA_D-dudresnayi_contig9973.28781.1|Name=mRNA_D-dudresnayi_contig9973.28781.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at D-dudresnayi_contig9973:441..817+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGAGAAGGCTAGTATGCAAGACATGATGGACAATTTGGTTCCCATTCA
CGTTCGCGATGATTGTGCCAACGTTCTGATTCCTCTGAACAAATGGAGAA
GGCTAGTATGCAAGACATGATGGACAATTTGGTTCCCATTCACGTTCGCG
ATGATTGTGCCAACGTTCTGATTCCTCTGAACAAGTGTCGGCGTCAGAAT
ATGTATCTTCCCTGGCACTGTGAGCATGAGAGACACAGCTACGAAATTTG
TTTGTACAAAGAGTATGAACGAAGGAAAGAAATTAAGAGATCTGATGGTA
AATAAGTGTCGGCGTCAGAATATGTATCTTCCCTGGCACTGTGAGCATGA
GAGACACAGCTACGAAATTTGTTTGTACAAAGAGTATGAACGAAGGAAAG
AAATTAAGAGATCTGATGGTAAATAA
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