mRNA_D-dudresnayi_contig9970.28779.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9970.28779.1
Unique NamemRNA_D-dudresnayi_contig9970.28779.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9970.28779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9970contigD-dudresnayi_contig9970:6478..8045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons6
Model size777
Cds size777
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9970.28779.1prot_D-dudresnayi_contig9970.28779.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9970 6478..8045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930959.469794-CDS-D-dudresnayi_contig9970:6477..66601622930959.469794-CDS-D-dudresnayi_contig9970:6477..6660Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9970 6478..6660 -
1690557980.4578142-CDS-D-dudresnayi_contig9970:6477..66601690557980.4578142-CDS-D-dudresnayi_contig9970:6477..6660Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9970 6478..6660 -
1622930959.4874654-CDS-D-dudresnayi_contig9970:6752..68511622930959.4874654-CDS-D-dudresnayi_contig9970:6752..6851Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9970 6753..6851 -
1690557980.4706445-CDS-D-dudresnayi_contig9970:6752..68511690557980.4706445-CDS-D-dudresnayi_contig9970:6752..6851Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9970 6753..6851 -
1622930959.508009-CDS-D-dudresnayi_contig9970:6967..71651622930959.508009-CDS-D-dudresnayi_contig9970:6967..7165Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9970 6968..7165 -
1690557980.4814785-CDS-D-dudresnayi_contig9970:6967..71651690557980.4814785-CDS-D-dudresnayi_contig9970:6967..7165Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9970 6968..7165 -
1622930959.5305293-CDS-D-dudresnayi_contig9970:7521..76201622930959.5305293-CDS-D-dudresnayi_contig9970:7521..7620Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9970 7522..7620 -
1690557980.4917262-CDS-D-dudresnayi_contig9970:7521..76201690557980.4917262-CDS-D-dudresnayi_contig9970:7521..7620Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9970 7522..7620 -
1622930959.543962-CDS-D-dudresnayi_contig9970:7702..78011622930959.543962-CDS-D-dudresnayi_contig9970:7702..7801Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9970 7703..7801 -
1690557980.5022829-CDS-D-dudresnayi_contig9970:7702..78011690557980.5022829-CDS-D-dudresnayi_contig9970:7702..7801Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9970 7703..7801 -
1622930959.556418-CDS-D-dudresnayi_contig9970:7946..80451622930959.556418-CDS-D-dudresnayi_contig9970:7946..8045Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9970 7947..8045 -
1690557980.5134704-CDS-D-dudresnayi_contig9970:7946..80451690557980.5134704-CDS-D-dudresnayi_contig9970:7946..8045Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9970 7947..8045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9970.28779.1

>prot_D-dudresnayi_contig9970.28779.1 ID=prot_D-dudresnayi_contig9970.28779.1|Name=mRNA_D-dudresnayi_contig9970.28779.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=259bp
NGLTALLWAADLGHLEVVELLIARGADLQVVDGNGLNAVLWAADRGHCDC
VRVLVAAEVDVNRTDQNGYTALHRAANGGYVDVVQQLLDAGANPAILDKE
REASLLEAAHRGDLAQVQLLLAQGTDVDAADGHGMVSLHYAASAGHLEVV
RALLAASAQVNAVDENHSTPLHWACSDRHVEVVRELLGASADPNLADQSG
MTALLWAADMGHLDVMQALMAAGADLSARDESGLTPLLWAADRGHVDCVR
ALLSCDIDV
back to top

mRNA from alignment at D-dudresnayi_contig9970:6478..8045-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9970.28779.1 ID=mRNA_D-dudresnayi_contig9970.28779.1|Name=mRNA_D-dudresnayi_contig9970.28779.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1568bp|location=Sequence derived from alignment at D-dudresnayi_contig9970:6478..8045- (Desmarestia dudresnayi DdudBR16 monoicous)
AACGGATTAACAGCGCTGCTGTGGGCTGCGGACCTGGGTCACCTGGAGGT
GGTAGAGCTGCTGATAGCACGCGGGGCCGATCTGCAAGTAGTCGACGGGG
TGAGTGCGTGTATCTTGTTATCCCTCACTGTATTGTGGGAAGTAGGGAGG
GGTTACAGTACTTTAGCTGGGTTTTATCTACTGTATATTGGAATGATACG
AGTAGTATGGTGCTAACTCTATACTATGTTACGCTTTGCAATAGAATGGG
TTGAATGCGGTGCTCTGGGCGGCGGATCGCGGCCACTGCGACTGTGTGCG
CGTGCTGGTCGCTGCTGAAGTCGATGTGAACAGGACTGATCAAGTAAACC
CTACTCGCAACACTGCACACCTATTTTTTGTATTCTATTTTATATGTTTA
TATCTGTACTGTGCTTGCTGTATAGAATGGTTACACTGCGTTGCATCGCG
CTGCGAATGGAGGCTATGTGGATGTGGTGCAGCAGTTGCTGGATGCCGGA
GCCAACCCCGCTATCCTCGACAAGGTACCCGCTGCTCGCCTCCATGACGC
TATAGTATACCTAGTTTGTGCTGACCTGTTACTGCTGTTCTACAGAATGA
CATGACCCCGCTGGACTGGGCGGAGGAGAGCGAGCACACGGAGATCGCGC
AGCTGCTCAGTGTGCGCATGCTCAGTGCAGCTCCTGTCCCGCAGCAGCAG
TCTGCCCCAGAGCCTGTGCACCCAGATGAGCCTTCATCAGAGAATGTGGA
ACCACAAGAACAGGTGGAACCTGAGCAGGCGGAGGAAATCACTCCTCAGC
AGGCCACTAAGGAGGTTAGGAATAGTATGCTATAGTTCGCTGTGCTGTAT
ATAATCTTAATTCTGTGTGCTATTGCGAAGGAGCGGGAGGCGTCCCTTCT
GGAGGCAGCGCACCGCGGGGACCTGGCCCAGGTGCAGCTGCTGCTCGCCC
AGGGCACGGACGTGGACGCTGCGGACGGGCACGGCATGGTATCTCTGCAC
TACGCTGCGAGTGCCGGTCATCTGGAGGTGGTGCGCGCTCTGCTCGCTGC
CTCGGCTCAGGTTAACGCGGTCGATGAGGTGAGCGCATGACATGTACTGA
GTACTGGTCTTATATTTAGTAGTCAGCTTAGTTCAGTTGAAAGAATAATA
TTCTTGATTATGTGTTTATTTGTCTCCGATTTCTTCGTATCCAGAACCAT
TCCACCCCGTTGCACTGGGCTTGCTCGGACCGCCATGTGGAGGTCGTCCG
GGAGCTGCTGGGAGCCTCGGCCGACCCCAACCTCGCTGACCAGGTACATC
CCAGTCACCCCACTGCGTCTTCTGTATGTGGTTATACTTGCTTACAATGT
ACTGTACTATCTTTGTATCTGGCATATTGTTATAGAGTGGCATGACCGCG
CTGCTGTGGGCTGCGGACATGGGTCACCTGGACGTGATGCAGGCACTGAT
GGCCGCGGGCGCTGACCTCAGTGCCCGGGACGAGAGCGGCCTCACCCCAC
TCCTCTGGGCGGCGGATCGCGGCCATGTTGACTGTGTGCGCGCTTTACTA
AGCTGTGATATCGATGTG
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig9970:6478..8045-

>mRNA_D-dudresnayi_contig9970.28779.1 ID=mRNA_D-dudresnayi_contig9970.28779.1|Name=mRNA_D-dudresnayi_contig9970.28779.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at D-dudresnayi_contig9970:6478..8045- (Desmarestia dudresnayi DdudBR16 monoicous)
AACGGATTAACAGCGCTGCTGTGGGCTGCGGACCTGGGTCACCTGGAGGT
GGTAGAGCTGCTGATAGCACGCGGGGCCGATCTGCAAGTAGTCGACGGGA
ACGGATTAACAGCGCTGCTGTGGGCTGCGGACCTGGGTCACCTGGAGGTG
GTAGAGCTGCTGATAGCACGCGGGGCCGATCTGCAAGTAGTCGACGGGAA
TGGGTTGAATGCGGTGCTCTGGGCGGCGGATCGCGGCCACTGCGACTGTG
TGCGCGTGCTGGTCGCTGCTGAAGTCGATGTGAACAGGACTGATCAAAAT
GGGTTGAATGCGGTGCTCTGGGCGGCGGATCGCGGCCACTGCGACTGTGT
GCGCGTGCTGGTCGCTGCTGAAGTCGATGTGAACAGGACTGATCAAAATG
GTTACACTGCGTTGCATCGCGCTGCGAATGGAGGCTATGTGGATGTGGTG
CAGCAGTTGCTGGATGCCGGAGCCAACCCCGCTATCCTCGACAAGAATGG
TTACACTGCGTTGCATCGCGCTGCGAATGGAGGCTATGTGGATGTGGTGC
AGCAGTTGCTGGATGCCGGAGCCAACCCCGCTATCCTCGACAAGGAGCGG
GAGGCGTCCCTTCTGGAGGCAGCGCACCGCGGGGACCTGGCCCAGGTGCA
GCTGCTGCTCGCCCAGGGCACGGACGTGGACGCTGCGGACGGGCACGGCA
TGGTATCTCTGCACTACGCTGCGAGTGCCGGTCATCTGGAGGTGGTGCGC
GCTCTGCTCGCTGCCTCGGCTCAGGTTAACGCGGTCGATGAGGAGCGGGA
GGCGTCCCTTCTGGAGGCAGCGCACCGCGGGGACCTGGCCCAGGTGCAGC
TGCTGCTCGCCCAGGGCACGGACGTGGACGCTGCGGACGGGCACGGCATG
GTATCTCTGCACTACGCTGCGAGTGCCGGTCATCTGGAGGTGGTGCGCGC
TCTGCTCGCTGCCTCGGCTCAGGTTAACGCGGTCGATGAGAACCATTCCA
CCCCGTTGCACTGGGCTTGCTCGGACCGCCATGTGGAGGTCGTCCGGGAG
CTGCTGGGAGCCTCGGCCGACCCCAACCTCGCTGACCAGAACCATTCCAC
CCCGTTGCACTGGGCTTGCTCGGACCGCCATGTGGAGGTCGTCCGGGAGC
TGCTGGGAGCCTCGGCCGACCCCAACCTCGCTGACCAGAGTGGCATGACC
GCGCTGCTGTGGGCTGCGGACATGGGTCACCTGGACGTGATGCAGGCACT
GATGGCCGCGGGCGCTGACCTCAGTGCCCGGGACGAGAGCGGCCTCACCC
CACTCCTCTGGGCGGCGGATCGCGGCCATGTTGACTGTGTGCGCGCTTTA
CTAAGCTGTGATATCGATGTGAGTGGCATGACCGCGCTGCTGTGGGCTGC
GGACATGGGTCACCTGGACGTGATGCAGGCACTGATGGCCGCGGGCGCTG
ACCTCAGTGCCCGGGACGAGAGCGGCCTCACCCCACTCCTCTGGGCGGCG
GATCGCGGCCATGTTGACTGTGTGCGCGCTTTACTAAGCTGTGATATCGA
TGTG
back to top