mRNA_D-dudresnayi_contig9939.28751.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9939.28751.1
Unique NamemRNA_D-dudresnayi_contig9939.28751.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9939.28751.1 vs. uniprot
Match: D8LK59_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK59_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 5.750e-62
Identity = 92/117 (78.63%), Postives = 108/117 (92.31%), Query Frame = 1
Query:    1 IDRQLLQDRSSPILMYDEVVLFEDFIHDHGVVRISVKTRIMPQCWFVLLRYWLRVDGVAMKVFDTRCFHKFGEQNVYRERTQYTSTFASLEQRGLATDPSVYANADAALPMLELSSG 351
            I+RQ+L D+SSPILMYD+VVLFEDFIHDHGVVR+SVKTR+MP  WFVLLRYWLRVDGV MKVFDTRCFHKFGE +V+RERTQ++ +F SLEQRGL+TDPS Y NA++ALP+L+LSSG
Sbjct:  177 INRQMLLDQSSPILMYDDVVLFEDFIHDHGVVRLSVKTRVMPGFWFVLLRYWLRVDGVVMKVFDTRCFHKFGELSVFRERTQHSVSFTSLEQRGLSTDPSAYPNAESALPVLDLSSG 293          
BLAST of mRNA_D-dudresnayi_contig9939.28751.1 vs. uniprot
Match: A0A836CMW7_9STRA (TIP41-like family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW7_9STRA)

HSP 1 Score: 130 bits (328), Expect = 4.030e-34
Identity = 59/113 (52.21%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    1 IDRQLLQDRSSPILMYDEVVLFEDFIHDHGVVRISVKTRIMPQCWFVLLRYWLRVDGVAMKVFDTRCFHKFGEQNVYRERTQYTSTFASLEQRGLATDPSVYANADAALPMLE 339
            ID  +LQD ++PIL +DEV LFEDFIHD G VR+S K R+MP+CW+VLLRYWLRVDG+ +K+ D R FHKFG  +V+RE +     F  +E+R  +   + +  AD A P+L+
Sbjct:  175 IDVAMLQDSAAPILFFDEVTLFEDFIHDAGEVRLSAKVRVMPRCWYVLLRYWLRVDGITLKIADARYFHKFGAADVHREVSVLQLPFEDVERRLPSATQACHLTADQAYPILK 287          
BLAST of mRNA_D-dudresnayi_contig9939.28751.1 vs. uniprot
Match: W7TH58_9STRA (TIP41-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH58_9STRA)

HSP 1 Score: 130 bits (328), Expect = 5.510e-34
Identity = 59/113 (52.21%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    1 IDRQLLQDRSSPILMYDEVVLFEDFIHDHGVVRISVKTRIMPQCWFVLLRYWLRVDGVAMKVFDTRCFHKFGEQNVYRERTQYTSTFASLEQRGLATDPSVYANADAALPMLE 339
            IDR LLQ R  PIL YD+V L+ED +HDHGVV ++VK R+MP CWFVLLRY+LRVDGV +++ DTR FH+ G + + +E  +   TFA L + GL+T  S Y + +A + M++
Sbjct:  274 IDRSLLQCRDQPILFYDDVTLYEDELHDHGVVSLNVKVRVMPTCWFVLLRYFLRVDGVLLRIRDTRYFHRMGHEWIGKESRRKEVTFAQLAEEGLSTRTSEYRDVNAVVGMID 386          
BLAST of mRNA_D-dudresnayi_contig9939.28751.1 vs. uniprot
Match: A0A0G4IT37_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IT37_PLABS)

HSP 1 Score: 124 bits (312), Expect = 6.300e-33
Identity = 62/114 (54.39%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 IDRQLLQDRSSPILMYDEVVLFEDFIHDHGVVRISVKTRIMPQCWFVLLRYWLRVDGVAMKVFDTRCFHKFGEQNVYRERTQYTSTFASLEQRGLATDPSVYANADAALPMLEL 342
            ID Q+L  R  PI  YD+VVLFED +HDHGV  +SV+ R+MPQC+ VL+R+WLR+DGV M+V DTR FH  G+  + RE     +TF  L+ RG A   + Y NADAALP L L
Sbjct:  125 IDTQMLT-RPDPIQWYDDVVLFEDELHDHGVSVLSVRVRVMPQCFLVLMRHWLRIDGVMMRVQDTRVFHDIGKPVICREVKLSEATFHDLQSRGHAGHAAQYPNADAALPYLAL 237          
BLAST of mRNA_D-dudresnayi_contig9939.28751.1 vs. uniprot
Match: A0A4D9D382_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D382_9STRA)

HSP 1 Score: 130 bits (328), Expect = 6.860e-33
Identity = 59/113 (52.21%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    1 IDRQLLQDRSSPILMYDEVVLFEDFIHDHGVVRISVKTRIMPQCWFVLLRYWLRVDGVAMKVFDTRCFHKFGEQNVYRERTQYTSTFASLEQRGLATDPSVYANADAALPMLE 339
            IDR LLQ R  PIL YD+V L+ED +HDHGVV ++VK R+MP CWFVLLRY+LRVDGV +++ DTR FH+ G + + +E  +   TFA L + GL+T  S Y + +A + M++
Sbjct:  206 IDRSLLQCRDQPILFYDDVTLYEDELHDHGVVSLNVKVRVMPTCWFVLLRYFLRVDGVLLRIRDTRYFHRMGHEWIGKESRRKEVTFAQLAEEGLSTRTSEYRDVNAVVGMID 318          
BLAST of mRNA_D-dudresnayi_contig9939.28751.1 vs. uniprot
Match: A0A7S2H1X7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H1X7_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.960e-29
Identity = 55/116 (47.41%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    1 IDRQLLQDRSSPILMYDEVVLFEDFIHDHGVVRISVKTRIMPQCWFVLLRYWLRVDGVAMKVFDTRCFHKFGEQNVYRERTQYTSTFASLEQRGLATDPSVYANAD---AALPMLE 339
            IDR LL D + PIL +D+V+LFED +HD G +RIS + R+MP  WFV++R W+R+DGV ++  +TR FHKFG+ +V RER      + +LE  GL  +P+  ++ D   A LP+LE
Sbjct:  173 IDRALLLDHTLPILFFDDVLLFEDELHDQGDMRISARIRVMPAAWFVVVRCWVRLDGVGLRAVETRLFHKFGDAHVSRERYAREVVWENLESVGLNGEPATLSDPDLVVAKLPLLE 288          
BLAST of mRNA_D-dudresnayi_contig9939.28751.1 vs. uniprot
Match: A0A7S2SEG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEG8_9STRA)

HSP 1 Score: 119 bits (298), Expect = 6.710e-29
Identity = 52/115 (45.22%), Postives = 80/115 (69.57%), Query Frame = 1
Query:    1 IDRQLLQDRSSPILMYDEVVLFEDFIHDHGVVRISVKTRIMPQCWFVLLRYWLRVDGVAMKVFDTRCFHKFGEQNVYRERTQYTSTFASLEQRGLATDPSVYANADAALPMLELS 345
            I R+++ DRS+PIL++D++VL+ED +HD G + +SVK R+MPQCWF+LLR + RVD V ++V +TR FH+ G++ V+RE    T ++  L  +G + DP  Y   +  +P L LS
Sbjct:  107 IQREMVADRSAPILLFDDLVLYEDELHDFGDMSVSVKFRVMPQCWFLLLRCFCRVDNVVIRVHETRMFHRVGDEYVHREDQHRTVSWEDLASQGRSVDPKDYKEVNRVVPTLPLS 221          
BLAST of mRNA_D-dudresnayi_contig9939.28751.1 vs. uniprot
Match: A0A0H5RA40_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RA40_9EUKA)

HSP 1 Score: 112 bits (279), Expect = 4.810e-28
Identity = 52/115 (45.22%), Postives = 76/115 (66.09%), Query Frame = 1
Query:    1 IDRQLLQDRSSPILMYDEVVLFEDFIHDHGVVRISVKTRIMPQCWFVLLRYWLRVDGVAMKVFDTRCFHKFGEQNVYRERTQYTSTFASLEQRGLATDPSVYANADAALPMLELS 345
            ID  +L+ +  PIL +++V+LFED +HDHG+  ++VK R+MP C+ VL R+WLRVD V ++VFDTR FH F +  V RE     STF  L ++G   +   Y +AD A+P L ++
Sbjct:  128 IDMAMLK-KPDPILWFEDVLLFEDELHDHGISILTVKIRVMPTCFLVLARHWLRVDDVILRVFDTRVFHDFSQTFVVREMKLLESTFDELAKQGHPANTGFYTSADIAIPYLRVT 241          
BLAST of mRNA_D-dudresnayi_contig9939.28751.1 vs. uniprot
Match: A4RZU0_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RZU0_OSTLU)

HSP 1 Score: 110 bits (274), Expect = 3.700e-27
Identity = 55/123 (44.72%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    1 IDRQLLQDRSSPILMYDEVVLFEDFIHDHGVVRISVKTRIMPQCWFVLLRYWLRVDGVAMKVFDTRCFHKFGEQN------VYRERTQYTSTFASLEQRGLATDPSVYANADAALPMLELSSG 351
            IDR +L +R  PILMYDE+ L+E  + D+GV  + +K R+MP+CWFVLLR+WLRVDGV +++F+TR F  F E +      V RE  +   T+ +L  RG   DP+ + +AD A  +L  + G
Sbjct:  131 IDRAMLTERD-PILMYDELTLYESELDDNGVAHLGLKVRVMPKCWFVLLRFWLRVDGVLIRLFETRFFCDFTEVDRTGAVVVVRETQRREETWDALHARGAPCDPTQFPDADQAASVLLAAGG 252          
BLAST of mRNA_D-dudresnayi_contig9939.28751.1 vs. uniprot
Match: A0A5P1EKX2_ASPOF (Uncharacterized protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EKX2_ASPOF)

HSP 1 Score: 109 bits (273), Expect = 5.110e-27
Identity = 52/110 (47.27%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   34 PILMYDEVVLFEDFIHDHGVVRISVKTRIMPQCWFVLLRYWLRVDGVAMKVFDTRCFHKFGEQN----VYRERTQYTSTFASLEQRGLATDPSVYANADAA---LPMLEL 342
            PIL YDEV+L+ED + D+G+  ++VK R+MP CWFVLLRYWLRVDGV M++ DTR + KF + N    + RE     +T  SL  +G  ++ +VY N D     LP+++L
Sbjct:  147 PILFYDEVILYEDELADNGISLLTVKVRVMPSCWFVLLRYWLRVDGVLMRLRDTRIYCKFSDDNGKPVILRENCWREATIESLSNKGFPSNIAVYGNPDQICQRLPIIKL 256          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9939.28751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK59_ECTSI5.750e-6278.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CMW7_9STRA4.030e-3452.21TIP41-like family-domain-containing protein n=1 Ta... [more]
W7TH58_9STRA5.510e-3452.21TIP41-like protein n=1 Tax=Nannochloropsis gaditan... [more]
A0A0G4IT37_PLABS6.300e-3354.39Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A4D9D382_9STRA6.860e-3352.21PPM-type phosphatase domain-containing protein n=2... [more]
A0A7S2H1X7_9STRA3.960e-2947.41Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2SEG8_9STRA6.710e-2945.22Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A0H5RA40_9EUKA4.810e-2845.22Uncharacterized protein n=1 Tax=Spongospora subter... [more]
A4RZU0_OSTLU3.700e-2744.72Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
A0A5P1EKX2_ASPOF5.110e-2747.27Uncharacterized protein n=1 Tax=Asparagus officina... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9939contigD-dudresnayi_contig9939:7402..7909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.9
Seed ortholog evalue6.8e-49
Seed eggNOG ortholog2880.D8LK59
KEGG koko:K17607
KEGG Pathwayko04138,map04138
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.DNA damage checkpoint
EggNOG OGsKOG3224@1,KOG3224@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTIP41-like protein
Ec32 orthologEc-06_008270.1
Exons2
Model size366
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.6645033-CDS-D-dudresnayi_contig9939:7401..75841622930955.6645033-CDS-D-dudresnayi_contig9939:7401..7584Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9939 7402..7584 -
1690557978.9665976-CDS-D-dudresnayi_contig9939:7401..75841690557978.9665976-CDS-D-dudresnayi_contig9939:7401..7584Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9939 7402..7584 -
1622930955.6852527-CDS-D-dudresnayi_contig9939:7726..79091622930955.6852527-CDS-D-dudresnayi_contig9939:7726..7909Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9939 7727..7909 -
1690557978.979077-CDS-D-dudresnayi_contig9939:7726..79091690557978.979077-CDS-D-dudresnayi_contig9939:7726..7909Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9939 7727..7909 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9939.28751.1prot_D-dudresnayi_contig9939.28751.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9939 7402..7909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9939.28751.1

>prot_D-dudresnayi_contig9939.28751.1 ID=prot_D-dudresnayi_contig9939.28751.1|Name=mRNA_D-dudresnayi_contig9939.28751.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=122bp
IDRQLLQDRSSPILMYDEVVLFEDFIHDHGVVRISVKTRIMPQCWFVLLR
YWLRVDGVAMKVFDTRCFHKFGEQNVYRERTQYTSTFASLEQRGLATDPS
VYANADAALPMLELSSGNSEP*
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mRNA from alignment at D-dudresnayi_contig9939:7402..7909-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9939.28751.1 ID=mRNA_D-dudresnayi_contig9939.28751.1|Name=mRNA_D-dudresnayi_contig9939.28751.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=508bp|location=Sequence derived from alignment at D-dudresnayi_contig9939:7402..7909- (Desmarestia dudresnayi DdudBR16 monoicous)
ATCGATCGGCAACTGCTTCAAGACCGCAGTAGCCCCATACTTATGTATGA TGAAGTGGTGTTGTTCGAAGACTTCATTCATGACCATGGGGTCGTGCGCA TCAGCGTTAAAACAAGAATAATGCCACAGTGCTGGTTTGTTCTTTTGCGC TATTGGCTGCGGGTGGATGGCGTGGCGATGAAGGTGTGTGTTTTATGCTG GCTTGCTGGAAGCCCGTGAATGCACCGACGGCACGACTATTGCCTAAGTT TTCGTGCTGGGTACTATACAGTTTACAGCAGACTATCACCCCGCACCGCT GCACGTCCACTGTGACTCGCAACAGGTATTCGATACGCGTTGCTTCCACA AATTCGGGGAGCAAAACGTATATCGGGAGCGCACGCAGTACACCTCCACG TTTGCGTCGCTCGAACAACGTGGGTTAGCAACAGACCCGTCAGTGTATGC AAATGCCGACGCTGCTTTGCCTATGCTCGAGCTTTCATCAGGTAATTCTG AACCATGA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9939:7402..7909-

>mRNA_D-dudresnayi_contig9939.28751.1 ID=mRNA_D-dudresnayi_contig9939.28751.1|Name=mRNA_D-dudresnayi_contig9939.28751.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at D-dudresnayi_contig9939:7402..7909- (Desmarestia dudresnayi DdudBR16 monoicous)
ATCGATCGGCAACTGCTTCAAGACCGCAGTAGCCCCATACTTATGTATGA
TGAAGTGGTGTTGTTCGAAGACTTCATTCATGACCATGGGGTCGTGCGCA
TCAGCGTTAAAACAAGAATAATGCCACAGTGCTGGTTTGTTCTTTTGCGC
TATTGGCTGCGGGTGGATGGCGTGGCGATGAAGATCGATCGGCAACTGCT
TCAAGACCGCAGTAGCCCCATACTTATGTATGATGAAGTGGTGTTGTTCG
AAGACTTCATTCATGACCATGGGGTCGTGCGCATCAGCGTTAAAACAAGA
ATAATGCCACAGTGCTGGTTTGTTCTTTTGCGCTATTGGCTGCGGGTGGA
TGGCGTGGCGATGAAGGTATTCGATACGCGTTGCTTCCACAAATTCGGGG
AGCAAAACGTATATCGGGAGCGCACGCAGTACACCTCCACGTTTGCGTCG
CTCGAACAACGTGGGTTAGCAACAGACCCGTCAGTGTATGCAAATGCCGA
CGCTGCTTTGCCTATGCTCGAGCTTTCATCAGGTAATTCTGAACCATGAG
TATTCGATACGCGTTGCTTCCACAAATTCGGGGAGCAAAACGTATATCGG
GAGCGCACGCAGTACACCTCCACGTTTGCGTCGCTCGAACAACGTGGGTT
AGCAACAGACCCGTCAGTGTATGCAAATGCCGACGCTGCTTTGCCTATGC
TCGAGCTTTCATCAGGTAATTCTGAACCATGA
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