mRNA_D-dudresnayi_contig9931.28746.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9931.28746.1
Unique NamemRNA_D-dudresnayi_contig9931.28746.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9931.28746.1 vs. uniprot
Match: D8LGF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF3_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.460e-45
Identity = 76/94 (80.85%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    1 SATEQFRPCRRVLTPGFSGAAHARAQGLARIEATPHPTPRQTGLRANAIAAGRSGYDVPDPGLVLQSKHMVMDDNGRPARERVYGELTLEKAFG 282
            SATEQFRPCRRVLTPGFSG   AR QGLARIE++P  TPR TGLR NA A+ RSGYD+PDPGLVLQSKH+VMDD GRPA+ERV GELTLEKAFG
Sbjct:    4 SATEQFRPCRRVLTPGFSGTEEARPQGLARIESSPRVTPRPTGLRTNAKASRRSGYDIPDPGLVLQSKHVVMDDTGRPAKERVSGELTLEKAFG 97
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BLAST of mRNA_D-dudresnayi_contig9931.28746.1 vs. uniprot
Match: A0A835YX95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX95_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 6.050e-21
Identity = 65/157 (41.40%), Postives = 84/157 (53.50%), Query Frame = 1 
Query:    1 SATEQFRPCRRVLTPGFSGAAHARAQGLARIEATPHPT------PRQTGLRANAIAAGRSGYDVPDPGLVLQSKHMVMDD--NGRPARERVYGELTLEKAFGLKRKVNTQREKRGGIPEKGNPGDKLFHHVDYSPGFHQIGESTVGSSFYRTMPRRG 447
            S T  FRP  R+     +      A    R   +P PT        + GLR     + RSG+D+PDP L LQ K +V+ D   G  A++ V GELTLE+ FG+K K+   R  R  I +   PGDKL+HHVDYSPGF++ G   VGS+F R   R G
Sbjct:   42 SDTAAFRPHIRIDEQAKARRGRE-ASPTGRKHFSPEPTGDGRAASARPGLRQIPELSRRSGFDMPDPDLSLQRKRVVVADAATGAFAKDHVSGELTLERTFGVKHKLAEMRGVRNAIAQA-CPGDKLYHHVDYSPGFYREGGHVVGSTFVRDAARVG 196
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9931.28746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGF3_ECTSI1.460e-4580.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YX95_9STRA6.050e-2141.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9931contigD-dudresnayi_contig9931:2879..7598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003840.1
Exons5
Model size690
Cds size690
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9931.28746.1prot_D-dudresnayi_contig9931.28746.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9931 2879..7598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.992744-CDS-D-dudresnayi_contig9931:2878..29681622930954.992744-CDS-D-dudresnayi_contig9931:2878..2968Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9931 2879..2968 -
1690557978.6640239-CDS-D-dudresnayi_contig9931:2878..29681690557978.6640239-CDS-D-dudresnayi_contig9931:2878..2968Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9931 2879..2968 -
1622930955.0096304-CDS-D-dudresnayi_contig9931:4239..44111622930955.0096304-CDS-D-dudresnayi_contig9931:4239..4411Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9931 4240..4411 -
1690557978.6720915-CDS-D-dudresnayi_contig9931:4239..44111690557978.6720915-CDS-D-dudresnayi_contig9931:4239..4411Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9931 4240..4411 -
1622930955.024414-CDS-D-dudresnayi_contig9931:5314..54621622930955.024414-CDS-D-dudresnayi_contig9931:5314..5462Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9931 5315..5462 -
1690557978.6802716-CDS-D-dudresnayi_contig9931:5314..54621690557978.6802716-CDS-D-dudresnayi_contig9931:5314..5462Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9931 5315..5462 -
1622930955.0419216-CDS-D-dudresnayi_contig9931:6611..66991622930955.0419216-CDS-D-dudresnayi_contig9931:6611..6699Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9931 6612..6699 -
1690557978.6894896-CDS-D-dudresnayi_contig9931:6611..66991690557978.6894896-CDS-D-dudresnayi_contig9931:6611..6699Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9931 6612..6699 -
1622930955.06426-CDS-D-dudresnayi_contig9931:7406..75981622930955.06426-CDS-D-dudresnayi_contig9931:7406..7598Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9931 7407..7598 -
1690557978.7043602-CDS-D-dudresnayi_contig9931:7406..75981690557978.7043602-CDS-D-dudresnayi_contig9931:7406..7598Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9931 7407..7598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9931.28746.1

>prot_D-dudresnayi_contig9931.28746.1 ID=prot_D-dudresnayi_contig9931.28746.1|Name=mRNA_D-dudresnayi_contig9931.28746.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=230bp
SATEQFRPCRRVLTPGFSGAAHARAQGLARIEATPHPTPRQTGLRANAIA
AGRSGYDVPDPGLVLQSKHMVMDDNGRPARERVYGELTLEKAFGLKRKVN
TQREKRGGIPEKGNPGDKLFHHVDYSPGFHQIGESTVGSSFYRTMPRRGR
EASPGVSSPAAAVPEGLGYALGYRKPKMDFHESRQASRYVDDLRAVLELT
EEAPTQLLPAGHGACTSWEDKTGMHTWPRK
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mRNA from alignment at D-dudresnayi_contig9931:2879..7598-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9931.28746.1 ID=mRNA_D-dudresnayi_contig9931.28746.1|Name=mRNA_D-dudresnayi_contig9931.28746.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4720bp|location=Sequence derived from alignment at D-dudresnayi_contig9931:2879..7598- (Desmarestia dudresnayi DdudBR16 monoicous)
TCCGCCACCGAGCAATTCCGCCCTTGTCGGAGGGTGCTGACGCCGGGGTT
CTCAGGCGCCGCGCATGCGAGGGCCCAGGGACTAGCAAGAATCGAAGCCA
CGCCTCATCCGACCCCGAGGCAGACAGGTCTTAGGGCGAACGCCATTGCA
GCGGGGCGCTCCGGCTACGATGTACCGGATCCGGGCCTCGTGGTGAGCTA
ACAAGACGCGAAGTTGTGATACGGACTCGGTGTTCATCTCACCATCGTGC
CGAGAGGAATAAACAACGTTAGGAAAGGAGTGTCGTCGTGCTTGCCAGAA
ATTCAGATAGATGATATGGCAGATTTTAGCGTGGCATGTACTTTTCGAGG
CATTGGGCGCTTCTAAAGTAAGCATTACCTGAACGACGTCTCGGTAGTGC
ATACGAGACAGTGGGCTCGTGTGTGAAGTACTACGCATGACGGACATGGT
GTATGTAGGGATCGATCAAGTGATTGCACCAAAATCATAGCATTGGTGCG
TATGATATTACCGGTAAGGGCAGTGATGGTGCGAGGAGAACACTACTGCG
TCGTCACCGAGGGTTCGGAACTGTGTTATAATTGTTTTATAGTACGTTTC
AAAAGCAGAGCCATGCGAGCATGGAAGGTTTCTCAGCGCGGACCCCATGG
CATCTACCACATCACATCGTGTGCGCCGTAAGTCTCCAACACGTACATCA
CTATGGATGCCACACCAGAGATTGCTCATGAACCCACTTCTTCTCTTGTG
TGTGCTTGGTTGACGTGCTCGCCGTTTACCGCGGCTGTGTTGCCATACCT
CAGCAAATCAATGAATATCTCGACAGAAACACATCCCACACAGTAGTATC
AACAGGACGTTTGTCTGCTTGACTTCTGCCCACTCCTCTTGACGCTCAGC
TTCAGTCGAAGCACATGGTGATGGATGACAACGGCCGACCCGCGCGGGAA
CGTGTTTACGGAGAGTTGACCTTGGAGAAGGCCTTCGGTGAGCAAATAGC
AGTGCCGCCACGCACACGATCGGTGGGTCGTACAACGACGACAATGATAG
TCCGTGTATAGACTATACGCATAATATGTGATGATCCTGAGAAAGAGAGA
GGTTTCGCTAACAATCGTGGTATACTCCATATTCTTAGTCGGAAAAGTGA
GCCACCCAACGGTAGTGCGCGGGCGGGCGGGCGGGCGGGGGAAGGGGGGG
GGGGGGTCGTTTAACGCCCCCCGGGGTGGGTAGGGGGTGTGTCGCTATCG
CGTCTTCTTCGTCCCTCTCATACCGAGTACAAACTCTGCATCATTGTCGG
GGAGGGGATCATCAAACCATTTTCCGATTGGCGAAGAGAAGTTTTGCGCC
TTCCCTCCCACGTGGCAGGAACACTTTTGCAAACACTGATCCCAATATCA
TACTACCGTTGCACGAGCTAAGTATCGGCAACCGCCGTAGTCGTTACACT
CCAAGCACGTACGCTCCGTCCGGAAGAAAATTTTTTCGTTGGGCGCGTAC
GCAAGAAAGCTATCTCATTGAGTACTCTGATTCCGTCCGTGGTGTGTTCT
TGGTTTATATTCAAGGGTACATGGTATGGGGATTGAGAACACTGCTGCAG
GGCTCTAACTACAGTAGACTACGTTATTAGTATACGAAGTAGGAGCATAT
AAAGGTGCATTGCTATCAGCGTGGAGCAGGATGTCAAATCGCGTATCGGC
TACTGTCGCATCGTGAGATTGACTTCGTCGGTGGTTCAGAACATGAAAGA
GAGACCCGAGGCGTTTCTTCTTTGGCCTCTCAGAGGTGGGGTCGATACCG
TGCGACCTGTGTTTACCAAGTGTGGAGTGAGATGTCAGACATCACGTGAT
AACATGAGCTCCAGTCATCTCTCATACTACACAGAGAGAGTGCGCTCTTT
TTAGGTAGAGCTCTGCAGGTATTTGAGGTCGCAATGACCATGGCGTATGA
AAGTTTACCTTTTGGCAGAAAAGCGCGTGCATTTTTGTGGACAACACAAC
AACAATATCGTCGCGTCTCTCAGCAAAACCGTTGTCGTCTTCATACCGGA
CAATGAATTGTGTAACGTTTTGTTTTTGGGGGCCAATGTGATGGCGGTGA
ATCTTCCCCCCGATGAACGCGGCGTCATGTGGGCAGGCTTGAAGCGGAAG
GTAAACACCCAGCGGGAGAAAAGAGGCGGGATCCCAGAGAAGGGCAACCC
TGGGGACAAGCTGTTTCACCACGTCGATTACTCTCCAGGGTTCCACCAAA
TTGGAGAATCTACCGTTGGAAGCTCGTTCTACAGGTAGGTACTCTAGGGT
GCGTGGAGAAGGGTATGGTCGTGTTAGTTTACATGCCTGAAAGGTTGGAT
CGTCGACCTTTCAGAAATACGCCCGAATCAAATCTTCAATCGCATATATA
TATACATTGTTATTGTCCCCGAATGATGTGCATTCGTGCGCTGTTCCCCA
GTGTATTGGCTCGCTTCTTTATAAATGCGCGGATTGAGATACATCTCTCT
CTATAGTACGAGTATTGCATTCATTTTGTACGCGTCGCATGTAACTGTTT
GATTTTCTAGCTGGTACTTACTTCGTATGTATGTATATTATTGTAACGTG
CCTCTCGTATTACTCGTATGGACACTGCTTAATTTAATTTTCTGGTGCTG
CTACTACTGCGGGTGCTGCTGCTTGACGTGTGCAATGATGATGTTGATGT
TGCTGTCTGTGGTGGCCCTAGTGCTTCGAGAAGGAAGGGCTTATTTTGGG
CGTGATTTTAAGGGAGCAGGGGATGATGATCATCGTATTGAACGAACTAC
TTCTTATTTGAAAATGACAAGCATTAATAATTGTTATCGTACCGCTCGTT
TTCGTAGAAATGTGCGGAGTGGGACAGCAGCTCTCTCTTCTCGTATTTTT
TTACGCGTCATATGCAAATTCTACCACTAACCCTAACCCGAACCCTAACA
AACACATCTATACTAGTAGCAAGTCAAAACCTCTGTAAATTTCCCGCAAA
GTTCCGTCCTACAACATTGCCAAGCCTACTGCGACTGAAAGGCAAAGCCC
CTAAAAGTGACCCCCTACCGTATGACAAAGCAACAAATGTATACGCCCCC
CCCCCTACCGTAGCACGGGTCAATATCTCCTTCCCCCCTCCCCGACTAAT
TCATGTCCCAACATTGTGTTCGCGTGTGAGTGCTCAGGACGATGCCTCGC
CGCGGACGGGAGGCATCTCCAGGGGTTTCCTCTCCCGCCGCGGCAGTTCC
AGAAGGGCTGGGCTATGCTCTAGGTTACCGAAAGCCGAAAATGGATTTCC
ACGAAAGCAGGCAGGCATCGCGATATGTGGACGATCTACGAGCGGTGCTG
GAACTCACGGTTAGTCTAATGACGGGTAACAACAGCGGTAGTAGTGTGAA
TATCCGTGACGCGAGCGCCGAGAAGGGGGTGCTCATGTGCTCTATCCCTT
AGGTACATCTTGGATCATCGGTGACGTACCCTCGCTTAGGGGTACGGCAC
TGGGTATGGAGAGTAAGGGTGTGTTGTGGTTCGGAAACGAATACGACGTG
GTGAACTACGTATGATATGGGTGAGGGTGTTCTGTGGGCGTTGATAAAGA
TAACGTCAAAACAATATTATACAAACCAAGTAACATTCTGCACTGTAAGG
ATACTGCGGCATCCAGAGGATAACCGGAAATTGATGCTTCCAGCATCTTA
TACTGGTAGGTCGAACCGTCGCCATCGGACACCTTACAATAACACAAACG
CTCCAACTACGAAAGAAAACAAGTGAGACAAGACATTCGCAACCCCCACC
GTACCCCCCTCCCATCATGTTAAATTCAAAATTATACCATTGTGCCACTC
GGGCTTTTAAAAGCCGTTGGTTGGCGCCCGAGCGGCTAAGTGGTTCTATC
CACTCAGCCACTCGGGCGTCAATCAAAGGCTCTTCAAAGCCCGAGTGGCT
CAGTGGTCTAACTTATAATGTAACAAAAACCTTGTTCCAGGCTTTGCCCA
GGCAGATACGCCTCTGTTATACGTAGTGTTCGTAGTAATATAGGGTGGGT
ATCGGCTACATGGCGGGTTTCGGGCAGTTACTACACCCCATTCCCCTATA
CGTATGCCACCTTGGGAAATCAGAATGAAGCTGGATCAAACTCTTGTTGA
CTGTTCGGTTCAGCTTGATGTTATCTTCCAGCCAGTATAGTAACCTACGA
CATGTGAGTATTACTTTGAGGGTCTATGAATTACTTCGATGAAGACAACA
GGCCGTCCGCACACAAATGATCATTGCTACTCCTCGATCCTAGCTTATAT
CCCAGCTTGTCAAACGCCCTCCAGAAATCCTATAATCCCGCCCCAAAGGT
TTCCGTCCCATTTGTCAACGCCGTCTCTCAGACCAATATAAACAGACCGA
TTTCTTCCCTATTTTCTTCCAAATTTCCCGATGGGAGAAAAATGGCAGGT
GTGACTTCTCAAACCCAGGATTAAAGTGGAACCCGTCACATCTACCTCTT
TTCTCCCTTTCCAAAACCCCCCTCGTCTACTCGTACATACACCTAATCCT
CCCTCCTCCCCCCCCCGCATTTGCCTGCCTGCCGGCCCGTTGCATCACCG
CGCTTGCTTGCGGTAAAACACACCGTGCAGGAAGAGGCACCCACGCAACT
TTTACCAGCGGGTCACGGGGCGTGCACAAGCTGGGAGGATAAAACGGGTA
TGCACACGTGGCCGAGGAAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9931:2879..7598-

>mRNA_D-dudresnayi_contig9931.28746.1 ID=mRNA_D-dudresnayi_contig9931.28746.1|Name=mRNA_D-dudresnayi_contig9931.28746.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at D-dudresnayi_contig9931:2879..7598- (Desmarestia dudresnayi DdudBR16 monoicous)
TCCGCCACCGAGCAATTCCGCCCTTGTCGGAGGGTGCTGACGCCGGGGTT
CTCAGGCGCCGCGCATGCGAGGGCCCAGGGACTAGCAAGAATCGAAGCCA
CGCCTCATCCGACCCCGAGGCAGACAGGTCTTAGGGCGAACGCCATTGCA
GCGGGGCGCTCCGGCTACGATGTACCGGATCCGGGCCTCGTGTCCGCCAC
CGAGCAATTCCGCCCTTGTCGGAGGGTGCTGACGCCGGGGTTCTCAGGCG
CCGCGCATGCGAGGGCCCAGGGACTAGCAAGAATCGAAGCCACGCCTCAT
CCGACCCCGAGGCAGACAGGTCTTAGGGCGAACGCCATTGCAGCGGGGCG
CTCCGGCTACGATGTACCGGATCCGGGCCTCGTGCTTCAGTCGAAGCACA
TGGTGATGGATGACAACGGCCGACCCGCGCGGGAACGTGTTTACGGAGAG
TTGACCTTGGAGAAGGCCTTCGCTTCAGTCGAAGCACATGGTGATGGATG
ACAACGGCCGACCCGCGCGGGAACGTGTTTACGGAGAGTTGACCTTGGAG
AAGGCCTTCGGCTTGAAGCGGAAGGTAAACACCCAGCGGGAGAAAAGAGG
CGGGATCCCAGAGAAGGGCAACCCTGGGGACAAGCTGTTTCACCACGTCG
ATTACTCTCCAGGGTTCCACCAAATTGGAGAATCTACCGTTGGAAGCTCG
TTCTACAGGCTTGAAGCGGAAGGTAAACACCCAGCGGGAGAAAAGAGGCG
GGATCCCAGAGAAGGGCAACCCTGGGGACAAGCTGTTTCACCACGTCGAT
TACTCTCCAGGGTTCCACCAAATTGGAGAATCTACCGTTGGAAGCTCGTT
CTACAGGACGATGCCTCGCCGCGGACGGGAGGCATCTCCAGGGGTTTCCT
CTCCCGCCGCGGCAGTTCCAGAAGGGCTGGGCTATGCTCTAGGTTACCGA
AAGCCGAAAATGGATTTCCACGAAAGCAGGCAGGCATCGCGATATGTGGA
CGATCTACGAGCGGTGCTGGAACTCACGGACGATGCCTCGCCGCGGACGG
GAGGCATCTCCAGGGGTTTCCTCTCCCGCCGCGGCAGTTCCAGAAGGGCT
GGGCTATGCTCTAGGTTACCGAAAGCCGAAAATGGATTTCCACGAAAGCA
GGCAGGCATCGCGATATGTGGACGATCTACGAGCGGTGCTGGAACTCACG
GAAGAGGCACCCACGCAACTTTTACCAGCGGGTCACGGGGCGTGCACAAG
CTGGGAGGATAAAACGGGTATGCACACGTGGCCGAGGAAGGAAGAGGCAC
CCACGCAACTTTTACCAGCGGGTCACGGGGCGTGCACAAGCTGGGAGGAT
AAAACGGGTATGCACACGTGGCCGAGGAAG
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