mRNA_D-dudresnayi_contig9923.28738.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9923.28738.1
Unique NamemRNA_D-dudresnayi_contig9923.28738.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9923.28738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9923contigD-dudresnayi_contig9923:8802..9491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size692
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.030101-CDS-D-dudresnayi_contig9923:8801..91701622930954.030101-CDS-D-dudresnayi_contig9923:8801..9170Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9923 8802..9170 +
1690557978.3297954-CDS-D-dudresnayi_contig9923:8801..91701690557978.3297954-CDS-D-dudresnayi_contig9923:8801..9170Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9923 8802..9170 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.0773256-UTR-D-dudresnayi_contig9923:9170..94911622930954.0773256-UTR-D-dudresnayi_contig9923:9170..9491Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9923 9171..9491 +
1690557978.341137-UTR-D-dudresnayi_contig9923:9170..94911690557978.341137-UTR-D-dudresnayi_contig9923:9170..9491Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig9923 9171..9491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9923.28738.1prot_D-dudresnayi_contig9923.28738.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9923 8802..9170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9923.28738.1

>prot_D-dudresnayi_contig9923.28738.1 ID=prot_D-dudresnayi_contig9923.28738.1|Name=mRNA_D-dudresnayi_contig9923.28738.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=123bp
HLLSSPQSFSSSISIRNSDPGPHSRHSSPLLTTVRAYVIYQAFLRALHYG
TCLCHIAGAPPPSPLRYVPIILWREGCSTLFPRRYSSKIFLTHALLALSA
TEDGTKKCNYVFTLVRTPNFHQ*
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mRNA from alignment at D-dudresnayi_contig9923:8802..9491+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9923.28738.1 ID=mRNA_D-dudresnayi_contig9923.28738.1|Name=mRNA_D-dudresnayi_contig9923.28738.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=690bp|location=Sequence derived from alignment at D-dudresnayi_contig9923:8802..9491+ (Desmarestia dudresnayi DdudBR16 monoicous)
CATTTATTGTCTTCGCCCCAATCTTTCTCCAGCTCAATCTCTATTCGCAA
CTCCGATCCTGGGCCACATAGCAGGCACTCCTCCCCCCTCCTCACTACAG
TACGTGCCTATGTCATATACCAGGCGTTCCTCCGCGCTCTCCACTACGGC
ACGTGTCTATGTCACATAGCAGGCGCTCCACCCCCCTCCCCACTACGGTA
TGTGCCTATAATTTTATGGCGAGAAGGGTGCAGCACTCTCTTCCCTCGTC
GATATTCATCGAAAATATTTCTTACTCACGCTCTTCTCGCGCTTTCCGCG
ACGGAAGATGGCACAAAAAAGTGTAATTATGTTTTCACCTTGGTTCGAAC
CCCGAACTTCCACCAATAGGGGTGGTGATCAATACCTGGCCTACTTGCCA
TCCCTAGGATGTTTCTGGTATTAGTTATGGTGACCCAGAAAAGAGGTACA
ATACACGAAAGCTAGGTGGAGAGGTGGAGTGAGTGGTCAACCCCCCACCG
CTCAGCAACAACTGCTCGTAGCTGTATATCATAAATCTCGTAGCGTCTAC
TCATACATACCCGCAAGACTATACGTACTCGGATGTGATACCACCTGATA
CTCTTTCTGTAACTGTAACTCCACGACACTGCGTATATAATTTTCACTTT
TTGTTAGACTGTTCGGTGAGACAAGCTATATCGAACATAC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9923:8802..9491+

>mRNA_D-dudresnayi_contig9923.28738.1 ID=mRNA_D-dudresnayi_contig9923.28738.1|Name=mRNA_D-dudresnayi_contig9923.28738.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at D-dudresnayi_contig9923:8802..9491+ (Desmarestia dudresnayi DdudBR16 monoicous)
CATTTATTGTCTTCGCCCCAATCTTTCTCCAGCTCAATCTCTATTCGCAA
CTCCGATCCTGGGCCACATAGCAGGCACTCCTCCCCCCTCCTCACTACAG
TACGTGCCTATGTCATATACCAGGCGTTCCTCCGCGCTCTCCACTACGGC
ACGTGTCTATGTCACATAGCAGGCGCTCCACCCCCCTCCCCACTACGGTA
TGTGCCTATAATTTTATGGCGAGAAGGGTGCAGCACTCTCTTCCCTCGTC
GATATTCATCGAAAATATTTCTTACTCACGCTCTTCTCGCGCTTTCCGCG
ACGGAAGATGGCACAAAAAAGTGTAATTATGTTTTCACCTTGGTTCGAAC
CCCGAACTTCCACCAATAGCATTTATTGTCTTCGCCCCAATCTTTCTCCA
GCTCAATCTCTATTCGCAACTCCGATCCTGGGCCACATAGCAGGCACTCC
TCCCCCCTCCTCACTACAGTACGTGCCTATGTCATATACCAGGCGTTCCT
CCGCGCTCTCCACTACGGCACGTGTCTATGTCACATAGCAGGCGCTCCAC
CCCCCTCCCCACTACGGTATGTGCCTATAATTTTATGGCGAGAAGGGTGC
AGCACTCTCTTCCCTCGTCGATATTCATCGAAAATATTTCTTACTCACGC
TCTTCTCGCGCTTTCCGCGACGGAAGATGGCACAAAAAAGTGTAATTATG
TTTTCACCTTGGTTCGAACCCCGAACTTCCACCAATAG
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