|
|
Homology
BLAST of mRNA_D-dudresnayi_contig9893.28706.1 vs. uniprot
Match: A0A6H5L2G1_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G1_9PHAE) HSP 1 Score: 198 bits (504), Expect = 1.970e-58 Identity = 106/166 (63.86%), Postives = 127/166 (76.51%), Query Frame = 2
Query: 299 MLVTVATEEGKSSQIQVAGDTAVSTVKSLVGAELGVSAGDTVCFNGQPLSDGITLAAAGVGEQDLLXXXXXXXXXXXXXXAA-PRGPSLSDIKSLEPNALIAFFKEHPQLLKHMHHENSELAVALETGDVGKVRTCIMMQQMNSHKVKWTKETEKAALFANPDSAE 793
M VTVATEEGKSSQI+V+GDTAVST++SLV EL V G V FNG+PL+D TLA AGV EQDLL AA P+GP+L+D+ S EP ++ FFK++PQLL+ +HH N+ELA A+ETGDVGKVRTC+MMQQMN HK KWT+ETE+AALFANPDS E
Sbjct: 1 MKVTVATEEGKSSQIEVSGDTAVSTIRSLVSTELSVGPGAQVTFNGRPLADTTTLAGAGVSEQDLLLVTMGGGGAFGGVAAAAPKGPTLADVGS-EPGEMVEFFKKNPQLLRQLHHVNAELAEAVETGDVGKVRTCLMMQQMNVHKAKWTRETERAALFANPDSGE 165
BLAST of mRNA_D-dudresnayi_contig9893.28706.1 vs. uniprot
Match: D7FZE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE4_ECTSI) HSP 1 Score: 201 bits (511), Expect = 2.110e-58 Identity = 108/166 (65.06%), Postives = 128/166 (77.11%), Query Frame = 2
Query: 299 MLVTVATEEGKSSQIQVAGDTAVSTVKSLVGAELGVSAGDTVCFNGQPLSDGITLAAAGVGEQDLLXXXXXXXXXXXXXXAA-PRGPSLSDIKSLEPNALIAFFKEHPQLLKHMHHENSELAVALETGDVGKVRTCIMMQQMNSHKVKWTKETEKAALFANPDSAE 793
M VTVATEEGKSSQI+V+GDTAVST+KSLV EL V G V FNG+PL+D TLA AGV EQDLL AA P+GP+L+D+ S EP ++ FFK++PQLL+ +HH N+ELA A+ETGDVGKVRTC+MMQQMNSHK KWT+ETE+AALFANPDS E
Sbjct: 1 MKVTVATEEGKSSQIEVSGDTAVSTIKSLVSTELSVGPGAQVTFNGRPLADTTTLAGAGVSEQDLLLVTMGGGGAFGGVAAAAPKGPTLADVGS-EPGEMLEFFKKNPQLLRQLHHVNAELAEAVETGDVGKVRTCLMMQQMNSHKAKWTRETERAALFANPDSEE 165
BLAST of mRNA_D-dudresnayi_contig9893.28706.1 vs. uniprot
Match: A0A7S3YAF7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAF7_HETAK) HSP 1 Score: 94.7 bits (234), Expect = 8.970e-19 Identity = 58/174 (33.33%), Postives = 94/174 (54.02%), Query Frame = 2
Query: 299 MLVTVATEEGKSSQIQVAGDTAVSTVKSLVGAELGVSAGDTVC-FNGQPLSDGITLAAAGVGEQDLLXXXXXXXXXXXXXXAAPRGPSLSDI-----KSLEPNALIAFFKEHPQLLKHMHHENSELAVALETGDVGKVRTCIMMQQMNSHKVKWTKETEKAALFANPDSAEVRK 802
M +T+ATE+G ++ I+V D V VK+L+ E+G+ + NGQ + D +A+ G+ E DL+ +A SL+D+ S P L+ + +L++ + H N +LA +L +GDV K+RT IMMQ+++ HK+K+ +E E AL NP E +K
Sbjct: 1 MRITLATEDGSATTIEVGQDETVENVKALIEVEMGIPVNSQLLTHNGQAVPDAGNMASTGINENDLIFIAVKPNAPSQVPGSA--NASLNDVIISLGPSPTPEMLLQTIAPNDRLMRELRHYNPDLAESLSSGDVVKIRTTIMMQELSQHKIKYEREQEDRALMDNPFDEEAQK 172
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 204.5 |
| Seed ortholog evalue | 3.9e-50 |
| Seed eggNOG ortholog | 2880.D7FZE4 |
| KEGG ko | ko:K09537,ko:K11885 |
| EggNOG free text desc. | aspartic-type endopeptidase activity |
| EggNOG OGs | KOG0012@1,KOG0012@2759 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03051,ko03110 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Ubiquitin-associated domain/translation elongation factor EF-Ts, N-terminal |
| Ec32 ortholog | Ec-27_001500.1 |
| Exons | 4 |
| Model size | 808 |
| Cds size | 510 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930949.895677-UTR-D-dudresnayi_contig9893:4867..5165 | 1622930949.895677-UTR-D-dudresnayi_contig9893:4867..5165 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9893 4868..5165 - |
| 1690557976.8626933-UTR-D-dudresnayi_contig9893:4867..5165 | 1690557976.8626933-UTR-D-dudresnayi_contig9893:4867..5165 | Desmarestia dudresnayi DdudBR16 monoicous | UTR | D-dudresnayi_contig9893 4868..5165 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dudresnayi_contig9893.28706.1 >prot_D-dudresnayi_contig9893.28706.1 ID=prot_D-dudresnayi_contig9893.28706.1|Name=mRNA_D-dudresnayi_contig9893.28706.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=170bp
MLVTVATEEGKSSQIQVAGDTAVSTVKSLVGAELGVSAGDTVCFNGQPLS
DGITLAAAGVGEQDLLLVTNGGGGAAGGGSAAPRGPSLSDIKSLEPNALI
AFFKEHPQLLKHMHHENSELAVALETGDVGKVRTCIMMQQMNSHKVKWTK
ETEKAALFANPDSAEVRKG* back to topmRNA from alignment at D-dudresnayi_contig9893:252..5165- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dudresnayi_contig9893.28706.1 ID=mRNA_D-dudresnayi_contig9893.28706.1|Name=mRNA_D-dudresnayi_contig9893.28706.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4914bp|location=Sequence derived from alignment at D-dudresnayi_contig9893:252..5165- (Desmarestia dudresnayi DdudBR16 monoicous)
GTTTAATTCGCGCCGCCATCGCCAGACCTCTGCAGAAACTCGGGCGTATT
GGGGCTCTCTCGCCGTCCACCTGTTCCGCCTTCGCTCTACGTCCGCGCTC
ACATTTTCCAGGCCCTGACACTCATCCCGATTTTTTGTTTTCTTCTTTGT
CCTCCGTGAATTTCACACTCGAATACATCAACTTGTCCTTTCTTCGGGCG
GTTGAATCGCACGCTGTGTTGGTTGAGGAGCAGAGGAGGTCATCTGCAGG
GATTCTGTCGTCAAATTGAAGTCGATTACAGTACGAATAAGAGCGAGGAT
GTTGGTGACCGTGGCTACGGAGGAGGGGAAATCGTCCCAGATACAGGTGA
GTGTAACATGGGCTAGTGGTGGTGGCGGTGGTGGCAGTACGGTAAAATTC
TTCGCATACCACCACACAGTGAGAACTGAGAACTGCTTACTGCTTACAGA
ATGCACCGATACTATCATTATGATCCTATCATACAGTAGTACAACAGTTC
AGTAGACTACTCTTGTTGTTGTAGTTGTTGTTCGTCGGTTCACAAATTCA
AACAGTAGTACGAGTAGTACGAGTACTCGTATGATGCAAGCACACGATGA
TGGGGCCTGTTTCCCAAAATTATCCTGTAGAGCCTGGGACACCCCAGGGG
AGCCACTGCGTTATAACTTATCTGAGGACCGATAGAATCCGCGCGACCGA
TGCATCTCACAGTGAGGTTGACGATTATCCCCTGGCCCCCGAACCAGTTT
GGAACGTCACGGCTGATGTCTTTGTAAGAAAAATAACAATACTCGTACCT
CGTAGTAGTTATCGTAGGCTTTCGATGGCTCTAGAGCTATGACTAACAAC
TCTGAACTGTATGCGGTATGCCTTATGGAGCCAATTGAATCGTGAACTTG
ATATACCAGTGTGCTACGTAGGTTTCTCTCACGAGCGTAGTGTTGCGTGC
GTCTGCCGATGTTCCACCCCTGTTGGCCTCGTTCGTGAGGTGCACGTTTA
GATCTGCACTACGAGTACTTATACTGTTGTTGTAATACTACGCGTACTCC
GTTGTAGACCCGTCGAGCCCTGAAACAGAGCCGCACACACACACACACAA
GGACTGTTGTAGCTCTCGACCGACAATTTTGGAACTCCACCTGCAGACCC
TCTTGTCGATACCCTAGATGCTGCGGCTCGAGACCGACAGTGACTATTAT
ATATGTACCGTGCCGATATTATACCCTCTTGGTCCTTTGGAACGTATCTA
GCAGTCCATTCCCTCTGTTGAGGTTTCTTGTGCTTGAGGCTCTCTGGACG
GCCTGCTCAGTCGACCCGCATGTACGACGAAGCCGTATCATATCAAGGCT
ATCATATACTGCACTGCATTATCTCTGCCCTAACGTCCTAGCTGCTACTG
TTGTACTGTCGGTGTGCCGACGGCGGTATGTGTGTGTTGAGTGCGGATGT
GTGTGCGAACAACACCGAAACATAAGATAACATCTGAGAAAGCTTTTGTT
TTCTTTTCTAAGAGAGACGAACCACGTGCCCGTGCCGCATTTATTTGTAC
AAACTACGACACTAGCACAAAATGCACGCCTTGTTGTATCATAATTAATA
ACGCGAAGCCAACAATACAAGATGGTGGCTTCGTAAAGAACGCGAGCGTG
TTCCACTTCCCGCGCCGCTTCCATTACATGGTCAGGTCTCCCCCCCCCGT
GTACCATCTACCGCAAGTCTTCCCGCGCCCCTGAACGGTCGCTAAACTAT
GCGGTCCGTGCCCTTTTCCTGTAAAATAGGAGGACTCTGAAGAATTGCCG
CTTGGTGTGCCGTCTCCACCTCGTGTTGCTAACAGGTAGCCGGGGACACG
GCTGTGTCGACCGTCAAGTCGCTCGTGGGCGCTGAGCTTGGCGTCAGCGC
CGGAGACACGGTGTGCTTTAACGGTCAGCCGTTGTCGGATGGCATCACTC
TGGCGGCTGCCGGGGTTGGCGAGCAGGACTTGCTCCTCGTCACAAACGGC
GGCGGCGGAGCCGCGGGCGGCGGATCTGTGCGTACGAATGTACATTTTTT
GGGTTTGGCGTGAATTACAACGATTTCGCTGTTTGTTGCCTCTGTTCCGT
TATTCTACATGCCGAGTTCGTGTTGCCTACAATTTCTCTCTGGGAGGGTT
TCGGCCGTCCCATCTCGCGGCGCCCATGATCACATAAAATGATGTAGGGG
CTCCCTTTTTTTACGCGTTTTAGAACCGATACGCTGTGATACGGGAAGTG
CTTTTGCGCATCCATTCATGGATTTCGTATTGGTTTGTCAACTGCCGTGC
CATCGGCCGGCGGGGTGGATTAACCAGCTGTAGGGGAGTGAAACTGGGAA
CAAGACGCGAGTCTGCTGTGTACGTTTGTGGGTGTAGATGTCGGTAAAAG
ATTTTGTTGGTGATGTTGTGTAGCGGGCTTTGACGCCCTCCTTTCTTGCT
TCTCCTGGCTTTGATTGTGCGCGGTGTCTCGACGTTTTCGGCAGGCCGCA
CCTAGAGGCCCGTCTCTGTCGGACATTAAGAGCTTGGAGCCTAACGCGCT
GATCGCCTTCTTCAAGGAGCACCCTCAGCTGCTGAAACACATGCACCACG
TGAGAACTTATCACCATGAGCTATGTGTATCAACACGCGCTAGTATCAAG
ACGGGTAGCAGAGGCGAGGGGGGGGGGGGCGTACTCATTTGTTACTTTCT
TTGACCGTTGACCACACATCCCTTTCGAAACGGAGCACCGTTCCCACCCC
TAGTAGAGACGCCTCCAGCATTTGGGCGCTCGTTTTTGCGATATCGTACA
TAAAAACTTTTTGCTTATCTTATCCCCTTCCTGTTTCGCTTTTCGTGGCT
TTAACACTCTCCTAGGATAGGGAGGGGGGGGGGGGGTACATGCCAACAGC
TGGTTGTGTAGAACTAGTAGTATGGTGCATTTTCATGTGGTTGCTCTTGG
AGGGGAGTGACATATGCTCGTACGGTGAAAACGGTCCAATGCTTGGAATC
CATCATGCTTGCCCGCGACATTGTTTTTTTCCGTCCCATTTATTATCTTC
GCTCTTCTATTCTTTCTATAGCTCCATCTCTCTTCGTAACTCAGGTCCGG
TATCACATAGTAGGGGCTCCTCCCTCCTTCCCACTACGGTACGTGACTAC
ATTTTTATCGCGAGAAGAGTGCAACACTTTCTTCCCTCGTCGACTTTCAT
CGAATTGTGCTTACTCACGCTCTCGCGTTTTCCGCGACGGAAGATGGCAC
AGAAAAGTGCGAACGGGAATCGAACCCCCAACTTCCGCCAACAGAGGCAA
CACCCTAACCAATAGACCACTGCGCCACATGGAACGTTTTATTGCTTGTG
TTAAATCGGAAAGTCTAAGTACTGCTGCAGTGTGTGTTACACGGGGAATC
TTGCTGTCCGAAGCGATGGTCTGTAACTGGTATCCTGGATTTTGTTTTGT
GATGTGTGCTGGGCTGTGATGTAAGCGTTTCACACGCGTACCGTAGTCGC
GCAAAGTGTCGTTGATGATGTGATGAAATCCACGCGACGTCTGATAACAT
GCCTATGGTATGAGCTGCAGCACCAAGCCGACCCCACTCCATGTGTCCGT
TAGTTTTAGCCGCCTTAACGCTTTTGGGCCTGACCCTTAGGAATGTCCGT
TTTATTGTTTTTTGACTTATTATAGTAACAACGTGTAGGCTTTTCAGCAG
TTAGGAAACTTATTTCACTAACCTTTAACGCGAACTATAACGTATACACT
GTAGTAATAATATAGATAATTAAAATCTCGCTAAAGATCCATCCTACAAC
AACGCTAAACCCTCTTATGTTTTTTTCTTTTTTTTTTCCCCACGAAATTA
CCGTCGATAGTGGTAAATTTTCGTCGTATTATACGGGAAGAGGTAAAAAT
CCTTGTGAAGGGCACGGCCCTAATTTTTTTGGATTTTACAGACGGAAACC
TCGATATGGTACTTGATGGACTACTCGTACAGAAAATGAAGTTGTGATTG
TAGCTTTTTACCTGAGCAAACCGTGCATCCAGTCAGCGAGCCTATTGTGG
TCGAGGTCCCAGGGTATCCCTATGCCACTACTACTGTAAAAGCGGATATG
TATATATATTTGCCGGGTGATAAACGTTTGCATGCACAAGGAACAAAGAA
GCAAAACGATATTCGTTCTCTTTGTTGCGCGCTTTTTTGTTGTCGCTTCA
GTTTGTTTTCTCTCCCATCATTTCCAGGATGTGACCCCGGACGGTCGAGG
TTTAATCGTGCTGTAGACCAATCGGTTACAAGTGCGCTGATATCTTTATT
AGTTGACCAACCAACCAATCAATCAACCAATCAATCGATCGAAGTCAAAA
ATCAAAACCAAGCCAACTGTTGTTGTCATGACATTAAAAATTCGCCATTT
CTTCTCTACGACATCTGGTTATAGCGTCCTCAGTGTCTGTGTTGATTCTT
CCATCCTAGAGAGGTAAGAAATTCCATAAAATAAGGAAAAATATAATCAA
GAGAGAGCAAACAAAAGAAACACAAAAGGATGGTAATAAACAAAAAATAA
GAGAACTGCAAATACTACAAGGACACCTGAGATATATGGAGTTCACGTCC
TATTCACAATCATATCTCTCCAAAATGCCGATCCAGGAAAAGCTCAGTCT
ATCATAATGAAAATCAAAGTCAATCTCACAATCAAGCCAACTGAAATACG
GAATTCACGCCCAATTCCGTTATCATTTCTCTTCAAAATGCCGATCCAGG
AAAATTCTGAGCTCGCGGTGGCCTTGGAGACCGGGGACGTGGGTAAGGTG
CGGACGTGCATAATGATGCAGCAGATGAACAGCCACAAGGTCAAGTGGAC
CAAGGAGACGGAGAAGGCGGCGCTGTTCGCGAACCCGGATAGCGCGGAGG
TGAGAAAAGGCTAG back to topCoding sequence (CDS) from alignment at D-dudresnayi_contig9893:252..5165- >mRNA_D-dudresnayi_contig9893.28706.1 ID=mRNA_D-dudresnayi_contig9893.28706.1|Name=mRNA_D-dudresnayi_contig9893.28706.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at D-dudresnayi_contig9893:252..5165- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTGGTGACCGTGGCTACGGAGGAGGGGAAATCGTCCCAGATACAGAT
GTTGGTGACCGTGGCTACGGAGGAGGGGAAATCGTCCCAGATACAGGTAG
CCGGGGACACGGCTGTGTCGACCGTCAAGTCGCTCGTGGGCGCTGAGCTT
GGCGTCAGCGCCGGAGACACGGTGTGCTTTAACGGTCAGCCGTTGTCGGA
TGGCATCACTCTGGCGGCTGCCGGGGTTGGCGAGCAGGACTTGCTCCTCG
TCACAAACGGCGGCGGCGGAGCCGCGGGCGGCGGATCTGTAGCCGGGGAC
ACGGCTGTGTCGACCGTCAAGTCGCTCGTGGGCGCTGAGCTTGGCGTCAG
CGCCGGAGACACGGTGTGCTTTAACGGTCAGCCGTTGTCGGATGGCATCA
CTCTGGCGGCTGCCGGGGTTGGCGAGCAGGACTTGCTCCTCGTCACAAAC
GGCGGCGGCGGAGCCGCGGGCGGCGGATCTGCCGCACCTAGAGGCCCGTC
TCTGTCGGACATTAAGAGCTTGGAGCCTAACGCGCTGATCGCCTTCTTCA
AGGAGCACCCTCAGCTGCTGAAACACATGCACCACGCCGCACCTAGAGGC
CCGTCTCTGTCGGACATTAAGAGCTTGGAGCCTAACGCGCTGATCGCCTT
CTTCAAGGAGCACCCTCAGCTGCTGAAACACATGCACCACGAAAATTCTG
AGCTCGCGGTGGCCTTGGAGACCGGGGACGTGGGTAAGGTGCGGACGTGC
ATAATGATGCAGCAGATGAACAGCCACAAGGTCAAGTGGACCAAGGAGAC
GGAGAAGGCGGCGCTGTTCGCGAACCCGGATAGCGCGGAGGTGAGAAAAG
GCTAGGAAAATTCTGAGCTCGCGGTGGCCTTGGAGACCGGGGACGTGGGT
AAGGTGCGGACGTGCATAATGATGCAGCAGATGAACAGCCACAAGGTCAA
GTGGACCAAGGAGACGGAGAAGGCGGCGCTGTTCGCGAACCCGGATAGCG
CGGAGGTGAGAAAAGGCTAG back to top
|